Wall clock time and date at job start Tue Mar 31 2020 17:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42900 * 109.47243 * 6.73872 * 3 2 1 5 5 C 1.42902 * 113.99922 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47037 * 180.02562 * 5 4 3 7 7 C 1.50692 * 109.47210 * 179.97438 * 6 5 4 8 8 O 1.20831 * 119.99969 * 0.02562 * 7 6 5 9 9 O 1.34228 * 120.00341 * 180.02562 * 7 6 5 10 10 C 1.45200 * 117.00520 * 185.08467 * 9 7 6 11 11 C 1.50697 * 109.47537 * 184.90887 * 10 9 7 12 12 O 1.21277 * 119.99690 * 355.00398 * 11 10 9 13 13 N 1.34769 * 120.00176 * 174.99618 * 11 10 9 14 14 C 1.37139 * 120.00008 * 3.38353 * 13 11 10 15 15 H 1.08003 * 120.00294 * 305.54779 * 14 13 11 16 16 C 1.38896 * 120.00327 * 125.54590 * 14 13 11 17 17 N 1.31414 * 120.00312 * 181.40619 * 16 14 13 18 18 Si 1.86800 * 119.99589 * 1.40450 * 16 14 13 19 19 H 1.48499 * 109.47248 * 95.25658 * 18 16 14 20 20 H 1.48503 * 109.47228 * 215.25511 * 18 16 14 21 21 H 1.48503 * 109.47494 * 335.25822 * 18 16 14 22 22 C 1.39785 * 120.00278 * 183.37661 * 13 11 10 23 23 C 1.38958 * 120.08276 * 171.68140 * 22 13 11 24 24 C 1.38083 * 119.92779 * 179.97438 * 23 22 13 25 25 C 1.38310 * 120.07222 * 359.97438 * 24 23 22 26 26 C 1.38303 * 120.16063 * 0.02562 * 25 24 23 27 27 C 1.38080 * 120.07621 * 359.97438 * 26 25 24 28 28 H 4.38447 * 5.44478 * 179.97438 * 4 1 2 29 29 H 1.09006 * 109.47063 * 246.73969 * 3 2 1 30 30 H 1.09000 * 109.47192 * 126.74286 * 3 2 1 31 31 H 1.08998 * 109.47032 * 60.00762 * 5 4 3 32 32 H 1.08998 * 109.47271 * 300.00275 * 5 4 3 33 33 H 1.09004 * 109.47004 * 60.00230 * 6 5 4 34 34 H 1.08998 * 109.47258 * 300.00214 * 6 5 4 35 35 H 1.08998 * 109.46937 * 64.90809 * 10 9 7 36 36 H 1.09003 * 109.46944 * 304.91016 * 10 9 7 37 37 H 0.96997 * 120.00195 * 179.97438 * 17 16 14 38 38 H 1.08002 * 120.03940 * 359.70778 * 23 22 13 39 39 H 1.07991 * 119.96600 * 179.97438 * 24 23 22 40 40 H 1.08001 * 119.91556 * 179.97438 * 25 24 23 41 41 H 1.08001 * 119.96251 * 180.02562 * 26 25 24 42 42 H 1.08002 * 120.04211 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1230 -1.3371 -0.1581 5 6 4.5476 -1.4484 -0.1719 6 6 4.9428 -2.9162 -0.3460 7 6 6.4450 -3.0336 -0.3612 8 8 7.1295 -2.0447 -0.2443 9 8 7.0229 -4.2366 -0.5046 10 6 8.4699 -4.2900 -0.3967 11 6 8.9453 -5.6870 -0.7024 12 8 8.1399 -6.5731 -0.8944 13 7 10.2654 -5.9515 -0.7625 14 6 11.1759 -4.9664 -0.4775 15 1 11.1355 -4.0247 -1.0048 16 6 12.1500 -5.1795 0.4894 17 7 13.0051 -4.2256 0.7822 18 14 12.2444 -6.8223 1.3737 19 1 13.2380 -7.6930 0.6957 20 1 12.6584 -6.6028 2.7828 21 1 10.9118 -7.4770 1.3455 22 6 10.7067 -7.2301 -1.1153 23 6 12.0572 -7.4617 -1.3466 24 6 12.4896 -8.7261 -1.6944 25 6 11.5803 -9.7616 -1.8122 26 6 10.2354 -9.5348 -1.5827 27 6 9.7960 -8.2730 -1.2346 28 1 -1.0498 -0.0005 0.0001 29 1 3.0092 0.4067 0.9442 30 1 3.0091 0.6156 -0.8235 31 1 4.9505 -1.0724 0.7685 32 1 4.9497 -0.8636 -0.9992 33 1 4.5399 -3.2919 -1.2865 34 1 4.5406 -3.5013 0.4811 35 1 8.7690 -4.0178 0.6155 36 1 8.9132 -3.5918 -1.1067 37 1 13.6852 -4.3744 1.4576 38 1 12.7673 -6.6527 -1.2586 39 1 13.5390 -8.9067 -1.8747 40 1 11.9213 -10.7495 -2.0847 41 1 9.5282 -10.3458 -1.6752 42 1 8.7456 -8.0964 -1.0560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756302280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:35 Heat of formation + Delta-G solvation = -68.435843 kcal Electronic energy + Delta-G solvation = -27048.143247 eV Core-core repulsion = 22961.052118 eV Total energy + Delta-G solvation = -4087.091129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.09847 -41.45656 -39.38139 -39.09353 -37.60650 -37.00492 -34.50009 -34.25488 -32.86535 -31.77515 -31.51412 -29.26163 -27.96488 -27.21042 -25.17132 -23.69565 -23.05982 -21.78270 -21.40308 -20.05446 -19.47974 -18.99794 -18.16527 -18.00398 -17.82973 -17.60210 -17.18169 -17.14909 -16.73705 -16.30175 -15.95897 -15.77225 -15.31832 -15.08990 -14.97678 -14.72321 -14.35766 -14.28182 -14.15638 -13.73355 -13.68411 -13.54419 -13.19674 -12.78784 -12.66981 -12.54185 -12.49024 -12.08989 -11.92852 -11.91081 -11.74223 -11.53081 -11.46590 -11.31927 -10.93639 -10.58759 -10.25011 -9.67736 -8.92072 -8.58012 -6.61054 0.35743 0.51662 1.01309 1.09979 1.22616 1.29087 1.38676 1.58781 1.64227 1.82698 2.10152 2.43269 2.67917 2.98085 3.04981 3.54109 3.57967 3.58491 3.95807 4.01507 4.10074 4.14923 4.17786 4.25044 4.31166 4.42111 4.44779 4.45874 4.65190 4.72827 4.73630 4.75258 4.81708 5.03270 5.20160 5.28682 5.45470 5.54116 5.63480 5.70491 5.89275 5.95579 6.01524 6.33237 6.54704 6.60028 6.73876 7.06912 7.36776 8.43425 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.020150 B = 0.002374 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.271589 B =11789.861818 C =12793.528265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.239 4.239 3 C 0.167 3.833 4 O -0.398 6.398 5 C 0.078 3.922 6 C -0.103 4.103 7 C 0.467 3.533 8 O -0.533 6.533 9 O -0.344 6.344 10 C 0.080 3.920 11 C 0.495 3.505 12 O -0.552 6.552 13 N -0.414 5.414 14 C -0.372 4.372 15 H 0.092 0.908 16 C 0.058 3.942 17 N -0.884 5.884 18 Si 0.919 3.081 19 H -0.236 1.236 20 H -0.290 1.290 21 H -0.276 1.276 22 C 0.128 3.872 23 C -0.179 4.179 24 C -0.105 4.105 25 C -0.154 4.154 26 C -0.103 4.103 27 C -0.203 4.203 28 H 0.253 0.747 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.286 0.714 38 H 0.121 0.879 39 H 0.145 0.855 40 H 0.155 0.845 41 H 0.149 0.851 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.475 1.310 -1.552 14.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.239 4.239 3 C 0.092 3.908 4 O -0.318 6.318 5 C 0.002 3.998 6 C -0.140 4.140 7 C 0.312 3.688 8 O -0.422 6.422 9 O -0.260 6.260 10 C 0.004 3.996 11 C 0.286 3.714 12 O -0.435 6.435 13 N -0.126 5.126 14 C -0.499 4.499 15 H 0.110 0.890 16 C -0.150 4.150 17 N -0.518 5.518 18 Si 0.744 3.256 19 H -0.159 1.159 20 H -0.217 1.217 21 H -0.201 1.201 22 C 0.033 3.967 23 C -0.200 4.200 24 C -0.123 4.123 25 C -0.173 4.173 26 C -0.121 4.121 27 C -0.222 4.222 28 H 0.269 0.731 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.096 0.904 38 H 0.138 0.862 39 H 0.162 0.838 40 H 0.173 0.827 41 H 0.167 0.833 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.586 1.177 -1.524 14.713 hybrid contribution 0.837 0.193 0.561 1.026 sum -13.750 1.370 -0.963 13.851 Atomic orbital electron populations 1.25864 0.96836 0.95787 0.99327 1.23078 0.94870 1.03798 1.02177 1.19265 0.84569 0.84001 1.02969 1.87817 1.21238 1.27843 1.94913 1.22136 0.80192 0.94813 1.02660 1.21131 0.84848 0.99120 1.08887 1.24087 0.92971 0.80196 0.71574 1.90697 1.66389 1.38654 1.46470 1.86471 1.22807 1.34367 1.82350 1.22350 0.77212 0.95024 1.05013 1.20597 0.82215 0.90222 0.78327 1.90253 1.54729 1.46561 1.51969 1.41303 1.04887 1.08800 1.57579 1.18892 1.12624 0.96006 1.22345 0.89016 1.25889 0.94616 0.99586 0.94934 1.69690 1.16994 1.33704 1.31370 0.86264 0.80350 0.81195 0.77768 1.15929 1.21742 1.20070 1.18720 0.94217 0.86061 0.97728 1.21045 0.94341 0.99195 1.05390 1.21256 1.00936 0.91682 0.98439 1.21438 0.92910 1.00011 1.02930 1.21448 0.96713 0.96128 0.97852 1.22780 1.02949 0.92699 1.03810 0.73052 0.89233 0.89200 0.91492 0.91461 0.84980 0.84930 0.87604 0.88065 0.90377 0.86163 0.83759 0.82702 0.83337 0.81763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 19.25 74.32 1.43 -0.86 16 2 C -0.24 -4.35 13.73 31.12 0.43 -3.92 16 3 C 0.17 2.71 6.41 70.18 0.45 3.16 16 4 O -0.40 -8.03 10.30 -148.98 -1.53 -9.57 16 5 C 0.08 1.50 5.23 71.98 0.38 1.88 16 6 C -0.10 -2.08 6.18 29.85 0.18 -1.90 16 7 C 0.47 13.88 7.95 71.23 0.57 14.45 16 8 O -0.53 -18.44 15.64 21.95 0.34 -18.10 16 9 O -0.34 -12.23 9.76 -45.06 -0.44 -12.67 16 10 C 0.08 3.23 4.87 71.24 0.35 3.57 16 11 C 0.49 22.76 7.65 87.66 0.67 23.43 16 12 O -0.55 -26.16 12.92 15.73 0.20 -25.95 16 13 N -0.41 -20.10 2.30 -458.91 -1.06 -21.15 16 14 C -0.37 -19.10 8.01 84.02 0.67 -18.43 16 15 H 0.09 4.97 7.70 -2.91 -0.02 4.94 16 16 C 0.06 2.99 4.61 84.91 0.39 3.38 16 17 N -0.88 -47.43 13.96 21.65 0.30 -47.13 16 18 Si 0.92 42.55 23.84 68.60 1.64 44.18 16 19 H -0.24 -10.12 6.14 99.48 0.61 -9.51 16 20 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 21 H -0.28 -13.57 6.48 99.48 0.64 -12.93 16 22 C 0.13 5.90 4.12 38.22 0.16 6.06 16 23 C -0.18 -7.72 5.57 22.41 0.12 -7.60 16 24 C -0.10 -3.64 9.76 22.25 0.22 -3.42 16 25 C -0.15 -4.72 10.04 22.30 0.22 -4.49 16 26 C -0.10 -3.48 10.04 22.25 0.22 -3.25 16 27 C -0.20 -8.61 9.03 22.41 0.20 -8.41 16 28 H 0.25 1.40 7.80 -4.43 -0.03 1.36 16 29 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.26 8.10 -2.39 -0.02 1.24 16 32 H 0.07 1.25 8.10 -2.39 -0.02 1.23 16 33 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.11 4.24 8.14 -2.39 -0.02 4.22 16 36 H 0.10 4.04 7.57 -2.39 -0.02 4.02 16 37 H 0.29 14.30 8.31 -92.71 -0.77 13.53 16 38 H 0.12 5.58 5.70 -2.91 -0.02 5.56 16 39 H 0.14 4.09 8.06 -2.92 -0.02 4.06 16 40 H 0.16 3.40 8.06 -2.91 -0.02 3.37 16 41 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 42 H 0.17 7.41 4.58 -58.42 -0.27 7.15 16 Total: -1.00 -67.03 363.66 6.75 -60.28 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.63 Total: 26.47 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 6.67 Total: 3.64 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: -0.76 Total: -68.28 kcal Atomic # 8 Polarization: -64.86 SS G_CDS: -1.43 Total: -66.29 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 1.64 Total: 44.18 kcal Total: -67.03 6.75 -60.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756302280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.156 kcal (2) G-P(sol) polarization free energy of solvation -67.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds