Wall clock time and date at job start Tue Mar 31 2020 18:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47489 * 12.12675 * 3 2 1 5 5 C 1.34779 * 119.99749 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00284 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.99726 * 179.97438 * 5 4 3 8 8 H 1.09004 * 109.47530 * 305.00176 * 7 5 4 9 9 C 1.53002 * 109.47153 * 64.99977 * 7 5 4 10 10 O 1.45197 * 109.47431 * 184.99654 * 7 5 4 11 11 C 1.34225 * 117.00043 * 149.99864 * 10 7 5 12 12 O 1.20826 * 119.99977 * 0.02562 * 11 10 7 13 13 C 1.50702 * 120.00091 * 180.02562 * 11 10 7 14 14 C 1.50700 * 109.47367 * 180.02562 * 13 11 10 15 15 C 1.38323 * 119.96592 * 269.72760 * 14 13 11 16 16 C 1.38279 * 120.13937 * 179.76712 * 15 14 13 17 17 C 1.38132 * 120.06628 * 0.50627 * 16 15 14 18 18 C 1.38857 * 119.92816 * 359.74797 * 17 16 15 19 19 O 1.35748 * 120.06504 * 179.97438 * 18 17 16 20 20 C 1.34836 * 117.00200 * 354.48292 * 19 18 17 21 21 H 1.08000 * 119.99648 * 5.06416 * 20 19 18 22 22 C 1.38653 * 120.00027 * 185.06064 * 20 19 18 23 23 N 1.31557 * 120.00128 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00052 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47459 * 89.99697 * 24 22 20 26 26 H 1.48500 * 109.47260 * 210.00236 * 24 22 20 27 27 H 1.48502 * 109.46863 * 329.99840 * 24 22 20 28 28 C 1.38077 * 119.96565 * 90.00033 * 14 13 11 29 29 H 4.40639 * 5.51361 * 179.97438 * 4 1 2 30 30 H 1.08998 * 109.47330 * 252.12033 * 3 2 1 31 31 H 1.09006 * 109.46879 * 132.12579 * 3 2 1 32 32 H 0.96994 * 120.00146 * 359.97438 * 4 3 2 33 33 H 1.08999 * 109.47068 * 59.99403 * 9 7 5 34 34 H 1.09002 * 109.47634 * 180.02562 * 9 7 5 35 35 H 1.09009 * 109.47180 * 300.00152 * 9 7 5 36 36 H 1.08998 * 109.47085 * 300.00075 * 13 11 10 37 37 H 1.08998 * 109.46959 * 60.00604 * 13 11 10 38 38 H 1.07997 * 119.93087 * 359.97438 * 15 14 13 39 39 H 1.07991 * 119.96889 * 180.25300 * 16 15 14 40 40 H 1.07999 * 120.03170 * 179.72814 * 17 16 15 41 41 H 0.96996 * 120.00296 * 180.02562 * 23 22 20 42 42 H 1.08000 * 120.03413 * 359.95334 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3495 -0.2902 5 6 4.4602 -1.5894 -0.3424 6 8 5.2479 -0.6876 -0.1496 7 6 4.9633 -2.9784 -0.6403 8 1 4.5294 -3.6822 0.0701 9 6 4.5581 -3.3736 -2.0617 10 8 6.4104 -3.0043 -0.5248 11 6 6.9707 -4.1629 -0.1437 12 8 6.2750 -5.1239 0.0853 13 6 8.4675 -4.2653 -0.0015 14 6 8.8366 -5.6601 0.4337 15 6 8.9252 -5.9629 1.7805 16 6 9.2589 -7.2428 2.1838 17 6 9.5151 -8.2204 1.2422 18 6 9.4320 -7.9182 -0.1105 19 8 9.6837 -8.8767 -1.0383 20 6 10.1198 -10.0689 -0.5839 21 1 10.1761 -10.2541 0.4786 22 6 10.4959 -11.0572 -1.4808 23 7 10.4277 -10.8314 -2.7751 24 14 11.0993 -12.7091 -0.8514 25 1 9.9462 -13.6325 -0.7001 26 1 12.0694 -13.2829 -1.8183 27 1 11.7622 -12.5252 0.4647 28 6 9.0915 -6.6330 -0.5124 29 1 -1.0497 -0.0004 0.0001 30 1 3.0092 0.3163 0.9780 31 1 3.0090 0.6902 -0.7622 32 1 2.5051 -2.0707 -0.4447 33 1 4.9918 -2.6699 -2.7721 34 1 4.9215 -4.3785 -2.2771 35 1 3.4716 -3.3542 -2.1485 36 1 8.9393 -4.0472 -0.9596 37 1 8.8114 -3.5487 0.7444 38 1 8.7302 -5.1990 2.5185 39 1 9.3234 -7.4772 3.2360 40 1 9.7799 -9.2187 1.5578 41 1 10.6904 -11.5229 -3.4025 42 1 9.0257 -6.3949 -1.5638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760625212.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:41 Heat of formation + Delta-G solvation = -64.908469 kcal Electronic energy + Delta-G solvation = -26447.544789 eV Core-core repulsion = 22360.606619 eV Total energy + Delta-G solvation = -4086.938171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.93145 -39.82220 -38.94323 -36.95943 -36.21955 -35.83418 -33.41465 -32.55194 -32.20718 -31.70275 -29.25185 -27.71629 -27.40385 -25.31514 -24.69134 -22.07469 -21.57754 -20.83202 -20.31633 -19.29986 -17.93437 -17.74626 -17.45513 -16.90449 -16.56672 -16.29895 -15.79822 -15.62562 -15.07260 -14.65256 -14.50304 -14.39703 -14.09266 -13.82129 -13.65484 -13.51963 -13.45514 -12.97865 -12.69406 -12.59577 -12.45384 -12.00124 -11.81926 -11.56523 -11.35159 -11.28636 -11.04371 -10.97320 -10.85677 -10.81479 -10.64143 -10.44512 -10.40767 -10.05476 -9.61492 -9.34341 -8.83266 -8.12110 -7.23507 -6.43454 -4.02624 1.65909 1.99682 2.12062 2.23941 2.30350 2.36191 2.57337 3.13371 3.14525 3.19337 3.22129 3.70067 3.97469 4.18146 4.47791 4.55076 4.63774 4.81960 4.93791 4.99394 5.03255 5.11078 5.17389 5.30609 5.32270 5.36141 5.49970 5.65267 5.73784 5.74967 5.77816 5.91890 6.15494 6.31264 6.32151 6.64261 6.89106 6.89586 6.95618 7.06472 7.22627 7.35509 7.42986 7.67761 7.79141 7.83163 8.01268 9.02175 9.72182 10.74636 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.023458 B = 0.001955 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.322223 B =14316.448756 C =14766.371719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.213 4.213 3 C 0.233 3.767 4 N -0.727 5.727 5 C 0.522 3.478 6 O -0.512 6.512 7 C 0.070 3.930 8 H 0.112 0.888 9 C -0.166 4.166 10 O -0.333 6.333 11 C 0.462 3.538 12 O -0.488 6.488 13 C -0.062 4.062 14 C -0.044 4.044 15 C -0.194 4.194 16 C -0.074 4.074 17 C -0.227 4.227 18 C 0.154 3.846 19 O -0.178 6.178 20 C -0.391 4.391 21 H 0.092 0.908 22 C 0.039 3.961 23 N -0.863 5.863 24 Si 0.941 3.059 25 H -0.274 1.274 26 H -0.278 1.278 27 H -0.268 1.268 28 C -0.171 4.171 29 H 0.223 0.777 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.406 0.594 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.127 0.873 41 H 0.270 0.730 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.226 18.615 4.661 24.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.213 4.213 3 C 0.111 3.889 4 N -0.382 5.382 5 C 0.307 3.693 6 O -0.386 6.386 7 C 0.012 3.988 8 H 0.130 0.870 9 C -0.224 4.224 10 O -0.250 6.250 11 C 0.304 3.696 12 O -0.373 6.373 13 C -0.100 4.100 14 C -0.045 4.045 15 C -0.213 4.213 16 C -0.093 4.093 17 C -0.246 4.246 18 C 0.100 3.900 19 O -0.082 6.082 20 C -0.468 4.468 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.498 5.498 24 Si 0.766 3.234 25 H -0.199 1.199 26 H -0.203 1.203 27 H -0.192 1.192 28 C -0.191 4.191 29 H 0.239 0.761 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.241 0.759 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.079 0.921 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.805 18.857 4.396 24.374 hybrid contribution -0.461 -1.295 0.326 1.413 sum -15.265 17.562 4.722 23.743 Atomic orbital electron populations 1.25070 0.95979 0.96914 1.00344 1.22854 0.94190 1.03047 1.01222 1.18070 0.83192 0.84539 1.03125 1.45846 1.06810 1.11667 1.73916 1.20226 0.82045 0.90174 0.76815 1.90761 1.54947 1.45697 1.47184 1.22319 0.80816 0.94999 1.00710 0.87029 1.22172 1.02374 1.04012 0.93811 1.86653 1.21074 1.37743 1.79509 1.24026 0.92502 0.80187 0.72900 1.90712 1.63865 1.37529 1.45171 1.20268 0.87043 0.97273 1.05393 1.18662 1.00123 0.92210 0.93483 1.20385 1.09745 0.97010 0.94199 1.20692 0.97590 0.92824 0.98158 1.21210 1.10004 1.00637 0.92784 1.19261 0.92731 0.89173 0.88826 1.83977 1.72589 1.20173 1.31461 1.21321 1.44034 0.87762 0.93655 0.89085 1.25280 0.96825 0.99462 0.94953 1.70038 1.44540 1.34276 1.00963 0.85714 0.78711 0.80402 0.78609 1.19917 1.20268 1.19200 1.19964 1.09210 0.91033 0.98849 0.76051 0.88758 0.88713 0.75903 0.90684 0.89982 0.90318 0.86804 0.86913 0.87701 0.87318 0.85502 0.92057 0.86595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 19.25 29.55 0.57 -0.26 16 2 C -0.21 -1.35 13.46 -37.12 -0.50 -1.85 16 3 C 0.23 1.57 6.15 -6.83 -0.04 1.52 16 4 N -0.73 -5.29 5.50 -63.16 -0.35 -5.64 16 5 C 0.52 5.55 7.18 -10.98 -0.08 5.47 16 6 O -0.51 -7.33 16.51 -14.05 -0.23 -7.56 16 7 C 0.07 0.76 2.97 -27.88 -0.08 0.68 16 8 H 0.11 1.17 7.16 -51.93 -0.37 0.80 16 9 C -0.17 -1.46 9.50 37.16 0.35 -1.11 16 10 O -0.33 -4.53 9.42 -45.88 -0.43 -4.97 16 11 C 0.46 6.92 7.92 36.01 0.29 7.21 16 12 O -0.49 -8.72 15.25 -18.75 -0.29 -9.00 16 13 C -0.06 -0.86 5.94 -29.03 -0.17 -1.04 16 14 C -0.04 -0.80 4.37 -104.65 -0.46 -1.26 16 15 C -0.19 -3.44 9.70 -39.53 -0.38 -3.83 16 16 C -0.07 -1.40 10.04 -39.61 -0.40 -1.80 16 17 C -0.23 -5.03 9.17 -39.39 -0.36 -5.39 16 18 C 0.15 3.77 6.65 -39.11 -0.26 3.51 16 19 O -0.18 -5.14 9.76 0.04 0.00 -5.14 16 20 C -0.39 -11.02 9.49 30.89 0.29 -10.73 16 21 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 22 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -25.40 13.67 55.48 0.76 -24.64 16 24 Si 0.94 20.61 29.55 -169.99 -5.02 15.59 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 26 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 27 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 28 C -0.17 -3.66 9.64 -39.40 -0.38 -4.04 16 29 H 0.22 0.38 7.80 -54.10 -0.42 -0.05 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.41 2.06 8.23 -40.82 -0.34 1.72 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.46 7.92 -51.92 -0.41 0.05 16 36 H 0.11 1.36 8.08 -51.93 -0.42 0.94 16 37 H 0.11 1.26 8.08 -51.93 -0.42 0.85 16 38 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 39 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 41 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 LS Contribution 381.09 15.07 5.74 5.74 Total: -1.00 -35.89 381.09 -6.57 -42.46 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -5.04 Total: 5.07 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -1.71 Total: -11.92 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 0.41 Total: -30.28 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.95 Total: -26.67 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.89 -6.57 -42.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760625212.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.445 kcal (2) G-P(sol) polarization free energy of solvation -35.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds