Wall clock time and date at job start Tue Mar 31 2020 18:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47489 * 12.12675 * 3 2 1 5 5 C 1.34779 * 119.99749 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00284 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.99726 * 179.97438 * 5 4 3 8 8 H 1.09004 * 109.47530 * 305.00176 * 7 5 4 9 9 C 1.53002 * 109.47153 * 64.99977 * 7 5 4 10 10 O 1.45197 * 109.47431 * 184.99654 * 7 5 4 11 11 C 1.34225 * 117.00043 * 149.99864 * 10 7 5 12 12 O 1.20826 * 119.99977 * 0.02562 * 11 10 7 13 13 C 1.50702 * 120.00091 * 180.02562 * 11 10 7 14 14 C 1.50700 * 109.47367 * 180.02562 * 13 11 10 15 15 C 1.38323 * 119.96592 * 269.72760 * 14 13 11 16 16 C 1.38279 * 120.13937 * 179.76712 * 15 14 13 17 17 C 1.38132 * 120.06628 * 0.50627 * 16 15 14 18 18 C 1.38857 * 119.92816 * 359.74797 * 17 16 15 19 19 O 1.35748 * 120.06504 * 179.97438 * 18 17 16 20 20 C 1.34836 * 117.00200 * 354.48292 * 19 18 17 21 21 H 1.08000 * 119.99648 * 5.06416 * 20 19 18 22 22 C 1.38653 * 120.00027 * 185.06064 * 20 19 18 23 23 N 1.31557 * 120.00128 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00052 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47459 * 89.99697 * 24 22 20 26 26 H 1.48500 * 109.47260 * 210.00236 * 24 22 20 27 27 H 1.48502 * 109.46863 * 329.99840 * 24 22 20 28 28 C 1.38077 * 119.96565 * 90.00033 * 14 13 11 29 29 H 4.40639 * 5.51361 * 179.97438 * 4 1 2 30 30 H 1.08998 * 109.47330 * 252.12033 * 3 2 1 31 31 H 1.09006 * 109.46879 * 132.12579 * 3 2 1 32 32 H 0.96994 * 120.00146 * 359.97438 * 4 3 2 33 33 H 1.08999 * 109.47068 * 59.99403 * 9 7 5 34 34 H 1.09002 * 109.47634 * 180.02562 * 9 7 5 35 35 H 1.09009 * 109.47180 * 300.00152 * 9 7 5 36 36 H 1.08998 * 109.47085 * 300.00075 * 13 11 10 37 37 H 1.08998 * 109.46959 * 60.00604 * 13 11 10 38 38 H 1.07997 * 119.93087 * 359.97438 * 15 14 13 39 39 H 1.07991 * 119.96889 * 180.25300 * 16 15 14 40 40 H 1.07999 * 120.03170 * 179.72814 * 17 16 15 41 41 H 0.96996 * 120.00296 * 180.02562 * 23 22 20 42 42 H 1.08000 * 120.03413 * 359.95334 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3495 -0.2902 5 6 4.4602 -1.5894 -0.3424 6 8 5.2479 -0.6876 -0.1496 7 6 4.9633 -2.9784 -0.6403 8 1 4.5294 -3.6822 0.0701 9 6 4.5581 -3.3736 -2.0617 10 8 6.4104 -3.0043 -0.5248 11 6 6.9707 -4.1629 -0.1437 12 8 6.2750 -5.1239 0.0853 13 6 8.4675 -4.2653 -0.0015 14 6 8.8366 -5.6601 0.4337 15 6 8.9252 -5.9629 1.7805 16 6 9.2589 -7.2428 2.1838 17 6 9.5151 -8.2204 1.2422 18 6 9.4320 -7.9182 -0.1105 19 8 9.6837 -8.8767 -1.0383 20 6 10.1198 -10.0689 -0.5839 21 1 10.1761 -10.2541 0.4786 22 6 10.4959 -11.0572 -1.4808 23 7 10.4277 -10.8314 -2.7751 24 14 11.0993 -12.7091 -0.8514 25 1 9.9462 -13.6325 -0.7001 26 1 12.0694 -13.2829 -1.8183 27 1 11.7622 -12.5252 0.4647 28 6 9.0915 -6.6330 -0.5124 29 1 -1.0497 -0.0004 0.0001 30 1 3.0092 0.3163 0.9780 31 1 3.0090 0.6902 -0.7622 32 1 2.5051 -2.0707 -0.4447 33 1 4.9918 -2.6699 -2.7721 34 1 4.9215 -4.3785 -2.2771 35 1 3.4716 -3.3542 -2.1485 36 1 8.9393 -4.0472 -0.9596 37 1 8.8114 -3.5487 0.7444 38 1 8.7302 -5.1990 2.5185 39 1 9.3234 -7.4772 3.2360 40 1 9.7799 -9.2187 1.5578 41 1 10.6904 -11.5229 -3.4025 42 1 9.0257 -6.3949 -1.5638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760625212.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:40 Heat of formation + Delta-G solvation = -87.957414 kcal Electronic energy + Delta-G solvation = -26448.544267 eV Core-core repulsion = 22360.606619 eV Total energy + Delta-G solvation = -4087.937648 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.99776 -40.92687 -40.50542 -38.48331 -37.51348 -36.57369 -34.36943 -34.11192 -33.59900 -32.61192 -30.92439 -28.84726 -28.28225 -27.28600 -25.59118 -23.45229 -23.12567 -21.93334 -21.49741 -19.91818 -19.49443 -19.00622 -18.79559 -18.17086 -17.48826 -17.31338 -16.78605 -16.60895 -16.52142 -16.24714 -16.09524 -15.50911 -15.25133 -15.12686 -14.92470 -14.51917 -14.36819 -14.25603 -14.02472 -13.95459 -13.60044 -13.45634 -13.01304 -12.95008 -12.74593 -12.49653 -12.43981 -12.24573 -12.10909 -11.98830 -11.82891 -11.64926 -11.51716 -11.21199 -10.92618 -10.80180 -10.27623 -9.70447 -9.00380 -8.46381 -6.14932 0.39705 0.73102 1.04741 1.15870 1.31241 1.35224 1.44500 1.52907 1.71012 1.81063 2.18124 2.45643 2.84364 3.16241 3.31046 3.39530 3.44545 3.65462 3.74003 3.82464 3.94626 4.08635 4.29305 4.37350 4.46350 4.48434 4.52119 4.57981 4.58785 4.60666 4.72827 4.98208 5.00859 5.02594 5.10930 5.12747 5.23817 5.30929 5.62056 5.70003 5.72678 6.02727 6.20159 6.23966 6.55220 6.66856 6.93734 6.98160 7.78845 8.76889 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.023458 B = 0.001955 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.322223 B =14316.448756 C =14766.371719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.249 4.249 3 C 0.233 3.767 4 N -0.709 5.709 5 C 0.528 3.472 6 O -0.554 6.554 7 C 0.064 3.936 8 H 0.116 0.884 9 C -0.162 4.162 10 O -0.337 6.337 11 C 0.469 3.531 12 O -0.524 6.524 13 C -0.063 4.063 14 C -0.036 4.036 15 C -0.177 4.177 16 C -0.072 4.072 17 C -0.241 4.241 18 C 0.112 3.888 19 O -0.233 6.233 20 C -0.414 4.414 21 H 0.101 0.899 22 C -0.024 4.024 23 N -0.921 5.921 24 Si 1.019 2.981 25 H -0.264 1.264 26 H -0.271 1.271 27 H -0.252 1.252 28 C -0.186 4.186 29 H 0.252 0.748 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.418 0.582 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.110 0.890 36 H 0.133 0.867 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.120 0.880 41 H 0.272 0.728 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.647 20.196 6.902 27.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.249 4.249 3 C 0.111 3.889 4 N -0.364 5.364 5 C 0.313 3.687 6 O -0.431 6.431 7 C 0.006 3.994 8 H 0.134 0.866 9 C -0.220 4.220 10 O -0.254 6.254 11 C 0.313 3.687 12 O -0.412 6.412 13 C -0.099 4.099 14 C -0.037 4.037 15 C -0.195 4.195 16 C -0.090 4.090 17 C -0.260 4.260 18 C 0.062 3.938 19 O -0.140 6.140 20 C -0.490 4.490 21 H 0.119 0.881 22 C -0.221 4.221 23 N -0.559 5.559 24 Si 0.838 3.162 25 H -0.189 1.189 26 H -0.195 1.195 27 H -0.176 1.176 28 C -0.206 4.206 29 H 0.269 0.731 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.255 0.745 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.129 0.871 36 H 0.151 0.849 37 H 0.169 0.831 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.137 0.863 41 H 0.081 0.919 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.278 20.490 6.668 27.005 hybrid contribution -0.231 -1.438 -0.228 1.475 sum -16.509 19.051 6.440 26.019 Atomic orbital electron populations 1.25863 0.96730 0.95007 0.98555 1.22899 0.94382 1.04778 1.02881 1.18047 0.83922 0.83887 1.03018 1.45735 1.05890 1.12536 1.72232 1.20147 0.82701 0.89460 0.76391 1.90745 1.56146 1.46676 1.49507 1.22597 0.79348 0.95426 1.02049 0.86597 1.22183 1.04465 1.02840 0.92466 1.86622 1.22870 1.36882 1.78992 1.24090 0.92729 0.79931 0.71976 1.90708 1.64766 1.38655 1.47041 1.20381 0.86637 0.95238 1.07679 1.19072 0.97928 0.93424 0.93246 1.20998 1.06215 0.97445 0.94853 1.21138 0.96033 0.92432 0.99418 1.21341 1.10687 1.01441 0.92524 1.19849 0.94487 0.89783 0.89715 1.83938 1.75324 1.21256 1.33453 1.21824 1.44426 0.88292 0.94453 0.88128 1.26595 0.96756 1.03687 0.95051 1.70185 1.47096 1.36022 1.02593 0.84581 0.78392 0.74646 0.78543 1.18916 1.19521 1.17596 1.20215 1.09717 0.90933 0.99689 0.73143 0.89025 0.88745 0.74462 0.90619 0.91619 0.87121 0.84888 0.83102 0.83379 0.83490 0.86255 0.91865 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 19.25 74.32 1.43 0.37 16 2 C -0.25 -2.72 13.46 31.12 0.42 -2.30 16 3 C 0.23 2.89 6.15 84.57 0.52 3.41 16 4 N -0.71 -9.25 5.50 -472.13 -2.60 -11.84 16 5 C 0.53 10.58 7.18 87.66 0.63 11.21 16 6 O -0.55 -15.45 16.51 15.72 0.26 -15.19 16 7 C 0.06 1.31 2.97 29.85 0.09 1.40 16 8 H 0.12 2.29 7.16 -2.38 -0.02 2.27 16 9 C -0.16 -2.66 9.50 71.98 0.68 -1.97 16 10 O -0.34 -8.70 9.42 -45.03 -0.42 -9.12 16 11 C 0.47 13.25 7.92 71.24 0.56 13.81 16 12 O -0.52 -18.20 15.25 21.96 0.34 -17.86 16 13 C -0.06 -1.55 5.94 29.10 0.17 -1.38 16 14 C -0.04 -1.24 4.37 -19.88 -0.09 -1.33 16 15 C -0.18 -5.62 9.70 22.30 0.22 -5.40 16 16 C -0.07 -2.54 10.04 22.25 0.22 -2.31 16 17 C -0.24 -10.76 9.17 22.39 0.21 -10.55 16 18 C 0.11 5.73 6.65 22.58 0.15 5.88 16 19 O -0.23 -14.33 9.76 -22.78 -0.22 -14.56 16 20 C -0.41 -24.53 9.49 67.92 0.64 -23.88 16 21 H 0.10 5.47 5.20 -2.91 -0.02 5.46 16 22 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 23 N -0.92 -57.15 13.67 21.61 0.30 -56.85 16 24 Si 1.02 43.36 29.55 68.60 2.03 45.38 16 25 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 27 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 28 C -0.19 -8.15 9.64 22.39 0.22 -7.93 16 29 H 0.25 -0.05 7.80 -4.43 -0.03 -0.09 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.42 3.38 8.23 -92.71 -0.76 2.62 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.11 1.05 7.92 -2.38 -0.02 1.03 16 36 H 0.13 2.86 8.08 -2.39 -0.02 2.84 16 37 H 0.15 2.66 8.08 -2.39 -0.02 2.64 16 38 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 39 H 0.15 4.01 8.06 -2.92 -0.02 3.99 16 40 H 0.12 5.39 5.64 -2.91 -0.02 5.37 16 41 H 0.27 15.46 8.31 -92.71 -0.77 14.68 16 42 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -84.07 381.09 6.52 -77.55 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.30 Total: 24.37 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 6.54 Total: -21.87 kcal Atomic # 7 Polarization: -66.40 SS G_CDS: -2.30 Total: -68.70 kcal Atomic # 8 Polarization: -56.68 SS G_CDS: -0.05 Total: -56.73 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -84.07 6.52 -77.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760625212.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.404 kcal (2) G-P(sol) polarization free energy of solvation -84.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds