Wall clock time and date at job start Tue Mar 31 2020 18:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46846 * 187.14671 * 3 2 1 5 5 C 1.34774 * 120.00189 * 180.02562 * 4 3 2 6 6 O 1.21291 * 119.99787 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00378 * 179.97438 * 5 4 3 8 8 H 1.09000 * 109.46990 * 55.00136 * 7 5 4 9 9 C 1.53001 * 109.47440 * 295.00132 * 7 5 4 10 10 O 1.45200 * 109.47349 * 174.99655 * 7 5 4 11 11 C 1.34224 * 117.00467 * 210.00221 * 10 7 5 12 12 O 1.20832 * 119.99546 * 359.97438 * 11 10 7 13 13 C 1.50701 * 120.00385 * 180.02562 * 11 10 7 14 14 C 1.50698 * 109.47087 * 179.97438 * 13 11 10 15 15 C 1.38321 * 119.96562 * 269.72368 * 14 13 11 16 16 C 1.38288 * 120.13667 * 179.76925 * 15 14 13 17 17 C 1.38125 * 120.06491 * 0.50918 * 16 15 14 18 18 C 1.38852 * 119.93617 * 359.74693 * 17 16 15 19 19 O 1.35749 * 120.07420 * 179.97438 * 18 17 16 20 20 C 1.34827 * 116.99491 * 354.47999 * 19 18 17 21 21 H 1.07996 * 120.00331 * 5.06486 * 20 19 18 22 22 C 1.38659 * 119.99825 * 185.05855 * 20 19 18 23 23 N 1.31557 * 119.99786 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00043 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47001 * 89.99663 * 24 22 20 26 26 H 1.48493 * 109.47181 * 209.99704 * 24 22 20 27 27 H 1.48497 * 109.47199 * 330.00183 * 24 22 20 28 28 C 1.38078 * 119.96238 * 90.00223 * 14 13 11 29 29 H 4.40638 * 5.51359 * 179.97438 * 4 1 2 30 30 H 1.08998 * 109.47075 * 67.14777 * 3 2 1 31 31 H 1.09004 * 109.47443 * 307.14033 * 3 2 1 32 32 H 0.97000 * 119.99992 * 359.97438 * 4 3 2 33 33 H 1.08998 * 109.47168 * 179.97438 * 9 7 5 34 34 H 1.08999 * 109.46861 * 59.99687 * 9 7 5 35 35 H 1.09000 * 109.47032 * 299.99978 * 9 7 5 36 36 H 1.09002 * 109.46862 * 299.99984 * 13 11 10 37 37 H 1.09003 * 109.46616 * 60.00162 * 13 11 10 38 38 H 1.07994 * 119.93616 * 0.02562 * 15 14 13 39 39 H 1.08000 * 119.96586 * 180.25365 * 16 15 14 40 40 H 1.08004 * 120.03140 * 179.76915 * 17 16 15 41 41 H 0.97002 * 119.99997 * 180.02562 * 23 22 20 42 42 H 1.08003 * 120.03953 * 359.95543 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3714 0.1718 5 6 4.4586 1.6165 0.2020 6 8 5.2472 0.7021 0.0873 7 6 4.9603 3.0266 0.3782 8 1 4.5257 3.4567 1.2805 9 6 4.5547 3.8675 -0.8340 10 8 6.4074 3.0143 0.4964 11 6 6.9666 3.9833 1.2379 12 8 6.2698 4.8147 1.7702 13 6 8.4633 4.0351 1.4055 14 6 8.8309 5.2091 2.2760 15 6 9.0900 6.4406 1.7019 16 6 9.4229 7.5214 2.4977 17 6 9.5081 7.3714 3.8681 18 6 9.2538 6.1353 4.4470 19 8 9.3372 5.9846 5.7936 20 6 9.7822 7.0424 6.5013 21 1 9.9752 7.9818 6.0047 22 6 9.9917 6.9243 7.8669 23 7 10.4254 7.9566 8.5576 24 14 9.6583 5.2993 8.7258 25 1 10.8916 4.4722 8.7162 26 1 9.2458 5.5566 10.1289 27 1 8.5726 4.5774 8.0150 28 6 8.9144 5.0528 3.6454 29 1 -1.0502 -0.0004 -0.0002 30 1 3.0095 -0.3983 -0.9470 31 1 3.0097 -0.6197 0.8192 32 1 2.5030 2.1027 0.2632 33 1 4.9172 4.8874 -0.7063 34 1 3.4683 3.8767 -0.9226 35 1 4.9892 3.4373 -1.7364 36 1 8.8086 3.1132 1.8734 37 1 8.9346 4.1457 0.4289 38 1 9.0280 6.5593 0.6303 39 1 9.6206 8.4826 2.0468 40 1 9.7719 8.2150 4.4888 41 1 10.5723 7.8738 9.5128 42 1 8.7158 4.0901 4.0928 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760625214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:51 Heat of formation + Delta-G solvation = -62.987970 kcal Electronic energy + Delta-G solvation = -26536.119836 eV Core-core repulsion = 22449.264945 eV Total energy + Delta-G solvation = -4086.854891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.99116 -39.87454 -39.10347 -37.09921 -36.32892 -35.86429 -33.44742 -32.59239 -32.33817 -31.78996 -29.50064 -27.75040 -27.50352 -25.25135 -24.74682 -22.19049 -21.61620 -20.83605 -20.27339 -19.32433 -17.98709 -17.78676 -17.57115 -17.06695 -16.59836 -16.35316 -15.83003 -15.67696 -15.22602 -14.85245 -14.56192 -14.30273 -13.98630 -13.83444 -13.76573 -13.69972 -13.37882 -13.09981 -12.76627 -12.64034 -12.49644 -12.19699 -12.01625 -11.75069 -11.36623 -11.34409 -11.07355 -11.02068 -10.89651 -10.82886 -10.74671 -10.48128 -10.16392 -10.09212 -9.63498 -9.40168 -8.87120 -8.21756 -7.39028 -6.40810 -4.07667 1.61790 1.92397 2.09148 2.21487 2.23745 2.25238 2.51651 3.16666 3.23331 3.26568 3.41818 3.68932 4.13730 4.24743 4.39070 4.46419 4.58755 4.67589 4.77595 4.97877 4.99713 5.02577 5.09810 5.22074 5.25664 5.29767 5.33579 5.53281 5.62788 5.66380 5.74920 5.80299 6.08642 6.21886 6.24356 6.49662 6.75240 6.86618 6.94603 7.05014 7.16497 7.28649 7.57198 7.64725 7.75458 7.79891 8.03879 8.94467 9.56691 10.66789 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014353 B = 0.002284 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.389189 B =12256.072865 C =13524.920514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.213 4.213 3 C 0.233 3.767 4 N -0.727 5.727 5 C 0.522 3.478 6 O -0.512 6.512 7 C 0.070 3.930 8 H 0.113 0.887 9 C -0.164 4.164 10 O -0.333 6.333 11 C 0.461 3.539 12 O -0.488 6.488 13 C -0.062 4.062 14 C -0.047 4.047 15 C -0.186 4.186 16 C -0.076 4.076 17 C -0.214 4.214 18 C 0.159 3.841 19 O -0.218 6.218 20 C -0.389 4.389 21 H 0.107 0.893 22 C 0.063 3.937 23 N -0.880 5.880 24 Si 0.905 3.095 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.260 1.260 28 C -0.172 4.172 29 H 0.223 0.777 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.406 0.594 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.134 0.866 41 H 0.279 0.721 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.472 -12.042 -20.140 28.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.213 4.213 3 C 0.111 3.889 4 N -0.382 5.382 5 C 0.307 3.693 6 O -0.385 6.385 7 C 0.011 3.989 8 H 0.131 0.869 9 C -0.222 4.222 10 O -0.249 6.249 11 C 0.303 3.697 12 O -0.373 6.373 13 C -0.100 4.100 14 C -0.047 4.047 15 C -0.205 4.205 16 C -0.094 4.094 17 C -0.233 4.233 18 C 0.107 3.893 19 O -0.123 6.123 20 C -0.465 4.465 21 H 0.124 0.876 22 C -0.140 4.140 23 N -0.518 5.518 24 Si 0.731 3.269 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.184 1.184 28 C -0.191 4.191 29 H 0.240 0.760 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.241 0.759 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.151 0.849 41 H 0.089 0.911 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.078 -12.574 -19.679 27.798 hybrid contribution -0.790 0.001 0.622 1.005 sum -15.868 -12.573 -19.057 27.804 Atomic orbital electron populations 1.25081 0.95982 0.96774 1.00429 1.22849 0.94183 1.03131 1.01185 1.18076 0.83223 0.83908 1.03726 1.45841 1.06791 1.09709 1.75866 1.20208 0.82079 0.90448 0.76589 1.90770 1.54867 1.45747 1.47130 1.22327 0.80778 0.93509 1.02298 0.86943 1.22155 1.02421 1.00817 0.96805 1.86651 1.21137 1.51356 1.65798 1.24020 0.92508 0.78285 0.74850 1.90717 1.63800 1.38182 1.44588 1.20265 0.87072 1.00145 1.02498 1.18656 1.00345 0.93320 0.92373 1.20443 1.08675 0.92797 0.98559 1.20750 0.97720 0.97671 0.93249 1.21329 1.08404 0.98300 0.95252 1.18999 0.93470 0.92940 0.83843 1.83572 1.74643 1.40434 1.13623 1.20760 1.44124 0.90466 0.91109 0.87616 1.24463 0.95542 0.98709 0.95300 1.69647 1.43535 1.29959 1.08613 0.86185 0.79775 0.82698 0.78287 1.19856 1.20794 1.18372 1.19978 1.09398 0.97875 0.91863 0.76031 0.88714 0.88705 0.75923 0.90177 0.90289 0.90732 0.86774 0.86836 0.87482 0.87000 0.84867 0.91069 0.86596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 19.25 29.55 0.57 -0.26 16 2 C -0.21 -1.35 13.46 -37.12 -0.50 -1.85 16 3 C 0.23 1.57 6.15 -6.83 -0.04 1.52 16 4 N -0.73 -5.19 5.50 -63.16 -0.35 -5.54 16 5 C 0.52 5.43 7.18 -10.99 -0.08 5.35 16 6 O -0.51 -7.27 16.51 -14.06 -0.23 -7.50 16 7 C 0.07 0.72 2.97 -27.88 -0.08 0.63 16 8 H 0.11 1.15 7.16 -51.93 -0.37 0.78 16 9 C -0.16 -1.23 9.50 37.16 0.35 -0.88 16 10 O -0.33 -4.30 9.42 -45.87 -0.43 -4.73 16 11 C 0.46 6.53 7.92 36.01 0.29 6.81 16 12 O -0.49 -8.31 15.25 -18.76 -0.29 -8.60 16 13 C -0.06 -0.80 5.94 -29.04 -0.17 -0.98 16 14 C -0.05 -0.79 4.37 -104.65 -0.46 -1.25 16 15 C -0.19 -3.10 9.70 -39.53 -0.38 -3.48 16 16 C -0.08 -1.38 10.04 -39.60 -0.40 -1.77 16 17 C -0.21 -4.66 9.17 -39.40 -0.36 -5.02 16 18 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 19 O -0.22 -5.82 8.59 0.06 0.00 -5.82 16 20 C -0.39 -11.05 9.95 30.89 0.31 -10.74 16 21 H 0.11 3.05 5.44 -52.49 -0.29 2.77 16 22 C 0.06 1.78 5.49 -17.51 -0.10 1.69 16 23 N -0.88 -25.52 13.96 55.48 0.77 -24.75 16 24 Si 0.90 21.91 28.62 -169.99 -4.86 17.04 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 28 C -0.17 -3.46 9.65 -39.39 -0.38 -3.84 16 29 H 0.22 0.38 7.80 -54.08 -0.42 -0.05 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.41 1.97 8.23 -40.82 -0.34 1.64 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.38 7.92 -51.93 -0.41 -0.03 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.11 1.29 8.09 -51.93 -0.42 0.87 16 37 H 0.11 1.13 8.08 -51.93 -0.42 0.71 16 38 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.13 3.03 5.64 -52.48 -0.30 2.73 16 41 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.12 2.20 8.06 -52.48 -0.42 1.78 16 LS Contribution 379.97 15.07 5.73 5.73 Total: -1.00 -35.05 379.97 -6.41 -41.46 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -5.06 Total: 3.28 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -1.70 Total: -10.59 kcal Atomic # 7 Polarization: -30.71 SS G_CDS: 0.43 Total: -30.28 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.95 Total: -26.64 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.86 Total: 17.04 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.05 -6.41 -41.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760625214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.523 kcal (2) G-P(sol) polarization free energy of solvation -35.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds