Wall clock time and date at job start Tue Mar 31 2020 16:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47278 * 2 1 4 4 H 1.08998 * 109.47375 * 302.49770 * 3 2 1 5 5 O 1.45207 * 109.47152 * 62.49522 * 3 2 1 6 6 C 1.34863 * 117.00092 * 252.36116 * 5 3 2 7 7 O 1.21592 * 119.99945 * 0.93790 * 6 5 3 8 8 C 1.46708 * 119.99903 * 180.93405 * 6 5 3 9 9 C 1.36215 * 125.44752 * 185.15785 * 8 6 5 10 10 C 1.41660 * 107.74281 * 179.91184 * 9 8 6 11 11 C 1.40044 * 133.33733 * 180.10169 * 10 9 8 12 12 C 1.36573 * 119.82671 * 180.27657 * 11 10 9 13 13 C 1.38854 * 120.60324 * 0.02562 * 12 11 10 14 14 C 1.37838 * 120.63906 * 359.97438 * 13 12 11 15 15 C 1.39091 * 119.81662 * 359.97438 * 14 13 12 16 16 N 1.37823 * 133.15078 * 180.02562 * 15 14 13 17 17 C 1.36874 * 125.62158 * 0.02562 * 16 15 14 18 18 H 1.08000 * 119.99609 * 137.25369 * 17 16 15 19 19 C 1.39018 * 120.00229 * 317.26034 * 17 16 15 20 20 N 1.31338 * 120.00066 * 158.84826 * 19 17 16 21 21 Si 1.86807 * 119.99835 * 338.85105 * 19 17 16 22 22 H 1.48492 * 109.47062 * 94.03106 * 21 19 17 23 23 H 1.48501 * 109.46500 * 214.03325 * 21 19 17 24 24 H 1.48494 * 109.47008 * 334.02967 * 21 19 17 25 25 C 1.50700 * 109.47325 * 182.49531 * 3 2 1 26 26 O 1.20823 * 120.00111 * 242.71389 * 25 3 2 27 27 O 1.34225 * 119.99783 * 62.70940 * 25 3 2 28 28 C 1.45204 * 116.99984 * 180.02562 * 27 25 3 29 29 H 1.09004 * 109.46702 * 300.00304 * 1 2 3 30 30 H 1.09002 * 109.47245 * 59.99588 * 1 2 3 31 31 H 1.08992 * 109.47234 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47145 * 240.00191 * 2 1 3 33 33 H 1.08995 * 109.46927 * 120.00277 * 2 1 3 34 34 H 1.08004 * 126.13370 * 0.03647 * 9 8 6 35 35 H 1.07995 * 120.08652 * 0.27672 * 11 10 9 36 36 H 1.08001 * 119.69783 * 180.02562 * 12 11 10 37 37 H 1.08003 * 119.68011 * 180.02562 * 13 12 11 38 38 H 1.07999 * 120.09419 * 179.97438 * 14 13 12 39 39 H 0.97006 * 120.00288 * 185.01184 * 20 19 17 40 40 H 1.08996 * 109.47417 * 180.02562 * 28 27 25 41 41 H 1.08999 * 109.46675 * 299.99738 * 28 27 25 42 42 H 1.08994 * 109.47289 * 59.99642 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6407 1.9691 -0.8667 5 8 1.6053 2.1096 1.2143 6 6 0.6317 3.0344 1.0898 7 8 0.1474 3.2642 -0.0016 8 6 0.1569 3.7633 2.2712 9 6 -0.8824 4.6435 2.2915 10 6 -1.0162 5.1230 3.6178 11 6 -1.8933 6.0277 4.2288 12 6 -1.7688 6.3000 5.5613 13 6 -0.7787 5.6879 6.3183 14 6 0.0964 4.7940 5.7396 15 6 -0.0112 4.4997 4.3844 16 7 0.6960 3.6703 3.5409 17 6 1.7578 2.8851 3.9007 18 1 1.8307 1.8730 3.5308 19 6 2.7423 3.3903 4.7422 20 7 3.5141 2.5693 5.4170 21 14 2.9676 5.2368 4.9131 22 1 2.1896 5.7244 6.0802 23 1 4.4066 5.5433 5.1144 24 1 2.4856 5.9104 3.6806 25 6 3.5458 1.4429 -0.0619 26 8 4.1877 1.9092 0.8493 27 8 4.1738 0.9252 -1.1292 28 6 5.6254 0.9590 -1.1205 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 -1.4960 4.9239 1.4481 35 1 -2.6662 6.5088 3.6478 36 1 -2.4467 6.9977 6.0305 37 1 -0.6940 5.9139 7.3711 38 1 0.8635 4.3234 6.3366 39 1 4.1516 2.9200 6.0586 40 1 6.0048 0.5108 -2.0388 41 1 5.9643 1.9928 -1.0543 42 1 5.9967 0.3992 -0.2622 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762820118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:51 Heat of formation + Delta-G solvation = -117.860196 kcal Electronic energy + Delta-G solvation = -29113.235762 eV Core-core repulsion = 25024.001432 eV Total energy + Delta-G solvation = -4089.234330 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.61353 -41.96803 -40.97110 -38.12720 -37.80566 -37.43814 -35.44485 -34.84832 -33.15939 -30.98528 -30.39031 -29.84227 -27.93113 -26.77245 -25.45470 -23.47509 -22.85053 -22.62206 -21.78508 -21.10480 -20.20643 -19.23326 -18.85425 -18.21833 -17.70424 -17.54787 -17.32561 -16.91321 -16.64182 -16.21440 -15.68110 -15.38292 -15.20655 -15.00863 -14.82929 -14.73541 -14.60313 -14.25770 -14.04527 -13.71687 -13.57332 -13.30188 -13.17875 -13.04412 -12.89232 -12.79379 -12.51413 -12.35028 -12.23233 -12.06402 -11.98597 -11.95215 -11.79125 -11.52702 -11.37512 -11.33083 -10.45579 -9.11225 -8.85701 -8.70974 -6.49858 -0.25685 0.81266 0.88309 0.91308 1.01908 1.11710 1.19044 1.26904 1.89229 1.96016 2.08418 2.41880 2.70418 3.12732 3.39868 3.52710 3.68359 3.75870 3.99549 4.19905 4.23762 4.24072 4.28160 4.29719 4.34386 4.53975 4.60683 4.62816 4.65541 4.73883 4.87657 4.91944 4.99746 5.07759 5.09578 5.12617 5.24023 5.25099 5.36381 5.66865 5.77320 5.81539 5.93217 6.08226 6.37694 6.45764 6.58812 6.81155 7.12929 8.23397 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013940 B = 0.004803 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.145859 B = 5828.742786 C = 7080.559629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.081 3.919 4 H 0.137 0.863 5 O -0.322 6.322 6 C 0.547 3.453 7 O -0.518 6.518 8 C -0.048 4.048 9 C -0.137 4.137 10 C -0.144 4.144 11 C -0.069 4.069 12 C -0.149 4.149 13 C -0.107 4.107 14 C -0.141 4.141 15 C 0.041 3.959 16 N -0.282 5.282 17 C -0.349 4.349 18 H 0.097 0.903 19 C 0.057 3.943 20 N -0.857 5.857 21 Si 0.910 3.090 22 H -0.214 1.214 23 H -0.277 1.277 24 H -0.284 1.284 25 C 0.458 3.542 26 O -0.519 6.519 27 O -0.345 6.345 28 C 0.027 3.973 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.129 0.871 33 H 0.068 0.932 34 H 0.168 0.832 35 H 0.152 0.848 36 H 0.160 0.840 37 H 0.148 0.852 38 H 0.103 0.897 39 H 0.292 0.708 40 H 0.149 0.851 41 H 0.057 0.943 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.067 -0.456 -8.331 9.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.025 3.975 4 H 0.155 0.845 5 O -0.238 6.238 6 C 0.395 3.605 7 O -0.409 6.409 8 C -0.159 4.159 9 C -0.164 4.164 10 C -0.148 4.148 11 C -0.087 4.087 12 C -0.168 4.168 13 C -0.127 4.127 14 C -0.161 4.161 15 C -0.073 4.073 16 N 0.053 4.947 17 C -0.476 4.476 18 H 0.114 0.886 19 C -0.154 4.154 20 N -0.487 5.487 21 Si 0.733 3.267 22 H -0.137 1.137 23 H -0.203 1.203 24 H -0.209 1.209 25 C 0.300 3.700 26 O -0.407 6.407 27 O -0.262 6.262 28 C -0.066 4.066 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.147 0.853 33 H 0.087 0.913 34 H 0.185 0.815 35 H 0.169 0.831 36 H 0.177 0.823 37 H 0.166 0.834 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.167 0.833 41 H 0.075 0.925 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.383 -0.629 -8.247 8.936 hybrid contribution 1.279 0.297 0.198 1.328 sum -2.104 -0.332 -8.050 8.327 Atomic orbital electron populations 1.21737 0.93497 1.03648 1.01567 1.21870 0.98093 0.90119 1.05337 1.22487 0.87315 0.98253 0.89456 0.84531 1.87044 1.51348 1.50001 1.35411 1.20006 0.76466 0.76389 0.87661 1.90745 1.57558 1.65760 1.26789 1.19623 1.04855 1.07346 0.84051 1.20798 0.99377 0.98962 0.97275 1.18346 0.99662 1.03541 0.93265 1.20663 0.97316 0.95444 0.95299 1.20925 0.99845 1.02385 0.93647 1.21148 0.94803 0.95970 1.00779 1.20350 1.02158 1.02094 0.91511 1.18911 0.95652 0.99411 0.93352 1.40404 1.21202 1.28809 1.04259 1.19141 1.00420 0.96459 1.31596 0.88559 1.25896 0.93541 1.02356 0.93614 1.69671 1.21180 1.37734 1.20139 0.86419 0.78459 0.80463 0.81397 1.13658 1.20268 1.20901 1.23676 0.91609 0.74536 0.80188 1.90799 1.68373 1.42795 1.38685 1.86447 1.24919 1.73592 1.41218 1.23664 0.74098 1.03148 1.05648 0.95552 0.91162 0.89047 0.85288 0.91274 0.81472 0.83070 0.82282 0.83422 0.87930 0.89712 0.83345 0.92451 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.60 71.98 0.69 -3.13 16 2 C -0.12 -3.15 5.63 30.59 0.17 -2.97 16 3 C 0.08 2.83 2.78 29.85 0.08 2.92 16 4 H 0.14 4.37 6.70 -2.39 -0.02 4.35 16 5 O -0.32 -14.70 6.80 -51.37 -0.35 -15.05 16 6 C 0.55 25.00 7.05 70.03 0.49 25.50 16 7 O -0.52 -22.11 15.90 19.53 0.31 -21.80 16 8 C -0.05 -2.32 6.76 39.87 0.27 -2.05 16 9 C -0.14 -5.78 10.55 22.64 0.24 -5.54 16 10 C -0.14 -5.98 6.16 -21.34 -0.13 -6.11 16 11 C -0.07 -2.20 10.06 22.32 0.22 -1.98 16 12 C -0.15 -4.31 9.97 22.03 0.22 -4.09 16 13 C -0.11 -3.57 10.02 22.32 0.22 -3.35 16 14 C -0.14 -6.11 6.82 22.38 0.15 -5.96 16 15 C 0.04 1.94 5.19 39.07 0.20 2.14 16 16 N -0.28 -14.86 2.40 -331.42 -0.80 -15.66 16 17 C -0.35 -20.13 9.12 84.09 0.77 -19.37 16 18 H 0.10 6.05 7.04 -2.91 -0.02 6.03 16 19 C 0.06 3.21 4.85 84.95 0.41 3.63 16 20 N -0.86 -49.16 13.95 21.67 0.30 -48.86 16 21 Si 0.91 44.69 24.55 68.60 1.68 46.37 16 22 H -0.21 -9.32 5.58 99.48 0.56 -8.77 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 24 H -0.28 -15.05 7.11 99.48 0.71 -14.34 16 25 C 0.46 16.65 7.31 71.24 0.52 17.17 16 26 O -0.52 -24.25 16.25 28.33 0.46 -23.79 16 27 O -0.35 -9.43 10.51 -51.37 -0.54 -9.97 16 28 C 0.03 0.57 10.56 113.37 1.20 1.77 16 29 H 0.03 0.84 7.20 -2.38 -0.02 0.83 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.13 2.49 8.11 -2.39 -0.02 2.47 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.17 5.95 8.06 -2.91 -0.02 5.93 16 35 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 36 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 37 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 38 H 0.10 4.71 5.96 -2.91 -0.02 4.70 16 39 H 0.29 15.30 8.31 -92.70 -0.77 14.53 16 40 H 0.15 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 42 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 Total: -1.00 -74.17 356.96 7.71 -66.46 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.90 Total: 23.73 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 5.74 Total: -1.43 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: -0.49 Total: -64.52 kcal Atomic # 8 Polarization: -70.50 SS G_CDS: -0.12 Total: -70.61 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.68 Total: 46.37 kcal Total: -74.17 7.71 -66.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762820118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.398 kcal (2) G-P(sol) polarization free energy of solvation -74.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds