Wall clock time and date at job start Tue Mar 31 2020 18:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.46568 * 2 1 4 4 C 1.37099 * 120.00195 * 276.53412 * 3 2 1 5 5 H 1.08003 * 120.00432 * 183.65405 * 4 3 2 6 6 C 1.38947 * 120.00040 * 3.65354 * 4 3 2 7 7 N 1.31409 * 119.99862 * 8.50990 * 6 4 3 8 8 Si 1.86801 * 120.00227 * 188.51011 * 6 4 3 9 9 H 1.48495 * 109.46958 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47112 * 120.00238 * 8 6 4 11 11 H 1.48501 * 109.47240 * 240.00167 * 8 6 4 12 12 C 1.34779 * 120.00215 * 96.54196 * 3 2 1 13 13 O 1.21286 * 120.00292 * 175.59092 * 12 3 2 14 14 C 1.50703 * 119.99674 * 355.58618 * 12 3 2 15 15 C 1.52993 * 109.47198 * 82.49905 * 14 12 3 16 16 O 1.42907 * 109.47136 * 322.49839 * 14 12 3 17 17 C 1.50699 * 109.47221 * 202.50309 * 14 12 3 18 18 C 1.38261 * 119.99874 * 304.97646 * 17 14 12 19 19 C 1.38211 * 120.00155 * 180.02562 * 18 17 14 20 20 C 1.38255 * 119.99944 * 359.97438 * 19 18 17 21 21 C 1.38212 * 120.00044 * 359.96464 * 20 19 18 22 22 C 1.50697 * 119.99758 * 180.02562 * 21 20 19 23 23 F 1.39898 * 109.47367 * 359.97438 * 22 21 20 24 24 F 1.39905 * 109.47625 * 119.99877 * 22 21 20 25 25 F 1.39903 * 109.46798 * 239.99491 * 22 21 20 26 26 C 1.38213 * 120.00399 * 125.18405 * 17 14 12 27 27 H 1.09000 * 109.47376 * 304.89879 * 1 2 3 28 28 H 1.08995 * 109.47307 * 64.89942 * 1 2 3 29 29 H 1.09003 * 109.46662 * 184.89652 * 1 2 3 30 30 H 1.08997 * 109.47040 * 240.00443 * 2 1 3 31 31 H 1.08995 * 109.47053 * 119.99483 * 2 1 3 32 32 H 0.96999 * 120.00474 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.47428 * 179.97438 * 15 14 12 34 34 H 1.08999 * 109.47174 * 300.00296 * 15 14 12 35 35 H 1.09002 * 109.47190 * 60.00087 * 15 14 12 36 36 H 0.96697 * 113.99997 * 299.93287 * 16 14 12 37 37 H 1.07999 * 119.99399 * 359.97438 * 18 17 14 38 38 H 1.07999 * 119.99926 * 179.97438 * 19 18 17 39 39 H 1.08005 * 119.99615 * 179.97438 * 20 19 18 40 40 H 1.07995 * 119.99763 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1193 2.0726 -1.1796 5 1 2.5344 3.0697 -1.1873 6 6 1.6877 1.4906 -2.3652 7 7 1.0322 0.3520 -2.3376 8 14 2.0392 2.3266 -3.9982 9 1 2.7872 3.5868 -3.7583 10 1 2.8526 1.4236 -4.8517 11 1 0.7579 2.6338 -4.6831 12 6 2.3682 1.9724 1.1596 13 8 2.8473 3.0866 1.1520 14 6 2.1641 1.2488 2.4657 15 6 3.3336 0.2924 2.7071 16 8 0.9443 0.5061 2.4133 17 6 2.0942 2.2506 3.5894 18 6 3.1216 3.1578 3.7716 19 6 3.0578 4.0762 4.8025 20 6 1.9664 4.0882 5.6511 21 6 0.9387 3.1822 5.4681 22 6 -0.2511 3.1957 6.3928 23 9 -0.0880 4.2046 7.3481 24 9 -1.4139 3.4369 5.6532 25 9 -0.3560 1.9577 7.0358 26 6 1.0051 2.2598 4.4404 27 1 -0.3634 0.5879 0.8428 28 1 -0.3633 0.4359 -0.9306 29 1 -0.3633 -1.0240 0.0877 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 0.7305 -0.0542 -3.1652 33 1 3.1862 -0.2306 3.6520 34 1 3.3841 -0.4321 1.8944 35 1 4.2640 0.8589 2.7471 36 1 0.1589 1.0498 2.2636 37 1 3.9743 3.1480 3.1089 38 1 3.8605 4.7845 4.9450 39 1 1.9168 4.8057 6.4568 40 1 0.2044 1.5488 4.3003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764876671.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:59 Heat of formation + Delta-G solvation = -189.924293 kcal Electronic energy + Delta-G solvation = -29862.018953 eV Core-core repulsion = 25227.802949 eV Total energy + Delta-G solvation = -4634.216004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -51.18385 -48.70143 -48.64394 -41.70263 -39.89146 -37.67562 -37.13857 -33.67360 -33.46781 -32.45345 -31.10616 -30.75721 -27.19459 -26.98272 -25.27877 -23.81404 -23.23763 -22.79709 -20.84319 -19.60299 -19.50346 -19.35812 -18.82579 -18.54127 -17.27076 -16.98777 -16.47542 -16.39726 -15.81623 -15.72394 -15.56137 -15.35119 -15.09217 -15.08020 -15.04158 -14.81075 -14.79379 -14.70364 -14.29538 -13.92832 -13.75516 -13.53653 -13.33083 -13.24209 -13.12606 -12.93787 -12.71425 -12.49160 -12.37429 -12.19174 -12.10466 -11.86377 -11.64619 -11.38660 -10.66183 -10.21230 -10.08723 -9.80204 -9.63623 -8.13365 -5.85328 -0.02956 0.21557 1.34720 1.43235 1.54973 1.63102 1.94662 2.25193 2.47281 2.68331 2.94482 3.06005 3.13149 3.20473 3.41481 3.55627 3.87292 3.92202 4.09224 4.16977 4.31440 4.44783 4.58574 4.66585 4.80188 4.81804 4.90132 5.05319 5.09302 5.13277 5.19762 5.33579 5.35485 5.43369 5.49797 5.71151 5.77670 6.08180 6.11496 6.41054 6.63567 7.20421 7.54572 8.05039 8.66992 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.019185 B = 0.003603 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.134371 B = 7770.388420 C = 8063.042664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.125 3.875 3 N -0.437 5.437 4 C -0.336 4.336 5 H 0.074 0.926 6 C -0.002 4.002 7 N -0.870 5.870 8 Si 0.986 3.014 9 H -0.280 1.280 10 H -0.271 1.271 11 H -0.275 1.275 12 C 0.402 3.598 13 O -0.625 6.625 14 C 0.176 3.824 15 C -0.129 4.129 16 O -0.538 6.538 17 C -0.112 4.112 18 C -0.053 4.053 19 C -0.124 4.124 20 C -0.070 4.070 21 C -0.200 4.200 22 C 0.517 3.483 23 F -0.174 7.174 24 F -0.183 7.183 25 F -0.179 7.179 26 C -0.066 4.066 27 H 0.033 0.967 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.269 0.731 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.381 0.619 37 H 0.125 0.875 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.181 0.636 14.802 14.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.003 3.997 3 N -0.153 5.153 4 C -0.464 4.464 5 H 0.092 0.908 6 C -0.204 4.204 7 N -0.510 5.510 8 Si 0.811 3.189 9 H -0.205 1.205 10 H -0.196 1.196 11 H -0.200 1.200 12 C 0.190 3.810 13 O -0.513 6.513 14 C 0.132 3.868 15 C -0.186 4.186 16 O -0.347 6.347 17 C -0.113 4.113 18 C -0.071 4.071 19 C -0.142 4.142 20 C -0.087 4.087 21 C -0.201 4.201 22 C 0.463 3.537 23 F -0.156 7.156 24 F -0.164 7.164 25 F -0.160 7.160 26 C -0.084 4.084 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.233 0.767 37 H 0.143 0.857 38 H 0.178 0.822 39 H 0.179 0.821 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.298 0.498 14.736 14.747 hybrid contribution -0.581 0.809 -1.148 1.520 sum -0.283 1.307 13.588 13.653 Atomic orbital electron populations 1.22144 0.95813 0.99865 1.00337 1.21850 0.95615 0.81377 1.00895 1.44076 1.53532 1.12836 1.04887 1.19752 1.40818 1.00579 0.85258 0.90781 1.25892 0.95423 0.97223 1.01828 1.70302 1.34863 1.17938 1.27923 0.84972 0.78109 0.78016 0.77798 1.20457 1.19585 1.20003 1.21152 0.85976 0.87436 0.86435 1.90466 1.51511 1.22191 1.87154 1.19847 0.87966 0.90250 0.88771 1.21818 0.94561 0.98408 1.03817 1.86687 1.15659 1.37616 1.94769 1.20093 0.95865 0.98537 0.96782 1.21412 0.98190 0.92527 0.94952 1.21440 0.99230 0.99271 0.94259 1.21283 0.91656 0.96496 0.99300 1.19927 0.96759 1.03300 1.00120 1.18163 0.82873 0.73541 0.79135 1.93152 1.95479 1.60965 1.65960 1.93213 1.52057 1.94179 1.76951 1.93210 1.96506 1.43343 1.82937 1.20706 0.97888 0.97002 0.92779 0.94794 0.92234 0.93202 0.89996 0.91284 0.92012 0.89124 0.91371 0.90609 0.76707 0.85721 0.82155 0.82149 0.83968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 8.93 71.98 0.64 -4.41 16 2 C 0.12 5.45 4.84 86.38 0.42 5.87 16 3 N -0.44 -21.51 2.64 -635.55 -1.68 -23.19 16 4 C -0.34 -18.34 9.53 84.04 0.80 -17.54 16 5 H 0.07 4.38 7.18 -2.91 -0.02 4.36 16 6 C 0.00 -0.12 5.34 84.93 0.45 0.34 16 7 N -0.87 -42.63 7.20 21.66 0.16 -42.48 16 8 Si 0.99 41.27 29.56 68.60 2.03 43.29 16 9 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 11 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 12 C 0.40 18.57 6.52 87.66 0.57 19.14 16 13 O -0.62 -32.65 13.74 -3.05 -0.04 -32.69 16 14 C 0.18 6.18 0.79 -12.29 -0.01 6.17 16 15 C -0.13 -3.90 8.45 71.98 0.61 -3.29 16 16 O -0.54 -17.55 7.85 -148.98 -1.17 -18.72 16 17 C -0.11 -3.60 4.66 -19.87 -0.09 -3.69 16 18 C -0.05 -1.63 7.90 22.27 0.18 -1.45 16 19 C -0.12 -3.00 10.05 22.27 0.22 -2.78 16 20 C -0.07 -1.57 9.43 22.27 0.21 -1.36 16 21 C -0.20 -5.09 5.37 -19.87 -0.11 -5.20 16 22 C 0.52 12.31 3.32 71.23 0.24 12.55 16 23 F -0.17 -3.81 15.97 44.97 0.72 -3.09 16 24 F -0.18 -4.71 17.24 44.97 0.78 -3.93 16 25 F -0.18 -4.31 17.23 44.97 0.77 -3.53 16 26 C -0.07 -1.87 8.76 22.27 0.20 -1.67 16 27 H 0.03 1.26 5.05 -2.39 -0.01 1.25 16 28 H 0.06 2.79 5.89 -2.39 -0.01 2.78 16 29 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.08 3.98 5.82 -2.39 -0.01 3.96 16 31 H 0.07 2.71 4.04 -2.39 -0.01 2.70 16 32 H 0.27 12.44 8.31 -92.71 -0.77 11.67 16 33 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.07 2.14 6.41 -2.39 -0.02 2.12 16 35 H 0.08 2.22 7.70 -2.39 -0.02 2.20 16 36 H 0.38 11.88 6.18 -74.06 -0.46 11.43 16 37 H 0.12 4.23 6.85 -2.91 -0.02 4.21 16 38 H 0.16 2.87 8.06 -2.91 -0.02 2.84 16 39 H 0.16 2.70 7.16 -2.91 -0.02 2.68 16 40 H 0.14 3.73 6.74 -2.91 -0.02 3.72 16 Total: -1.00 -60.19 328.29 6.56 -53.63 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.67 Total: 28.03 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 4.33 Total: 2.68 kcal Atomic # 7 Polarization: -64.15 SS G_CDS: -1.52 Total: -65.67 kcal Atomic # 8 Polarization: -50.20 SS G_CDS: -1.21 Total: -51.42 kcal Atomic # 9 Polarization: -12.83 SS G_CDS: 2.27 Total: -10.56 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.29 kcal Total: -60.19 6.56 -53.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764876671.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.295 kcal (2) G-P(sol) polarization free energy of solvation -60.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds