Wall clock time and date at job start Tue Mar 31 2020 18:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47326 * 2 1 4 4 C 1.37091 * 119.99933 * 266.99790 * 3 2 1 5 5 H 1.08002 * 120.00031 * 182.41050 * 4 3 2 6 6 C 1.38951 * 120.00201 * 2.40868 * 4 3 2 7 7 N 1.31418 * 120.00115 * 29.99199 * 6 4 3 8 8 Si 1.86807 * 120.00271 * 209.99297 * 6 4 3 9 9 H 1.48499 * 109.46865 * 94.98837 * 8 6 4 10 10 H 1.48494 * 109.47119 * 214.99179 * 8 6 4 11 11 H 1.48503 * 109.46770 * 334.99353 * 8 6 4 12 12 C 1.34774 * 120.00196 * 86.99281 * 3 2 1 13 13 O 1.21300 * 119.99669 * 4.33661 * 12 3 2 14 14 C 1.50696 * 120.00178 * 184.33143 * 12 3 2 15 15 C 1.53002 * 109.46957 * 173.53498 * 14 12 3 16 16 O 1.42897 * 109.47039 * 293.53381 * 14 12 3 17 17 C 1.50696 * 109.46992 * 53.53657 * 14 12 3 18 18 C 1.38262 * 120.00194 * 45.63349 * 17 14 12 19 19 C 1.38216 * 120.00062 * 180.32270 * 18 17 14 20 20 C 1.38254 * 119.99860 * 359.94814 * 19 18 17 21 21 C 1.38214 * 120.00269 * 0.03108 * 20 19 18 22 22 C 1.50697 * 120.00307 * 179.97438 * 21 20 19 23 23 F 1.39895 * 109.47300 * 270.02045 * 22 21 20 24 24 F 1.39908 * 109.46889 * 30.01788 * 22 21 20 25 25 F 1.39901 * 109.47309 * 150.01468 * 22 21 20 26 26 C 1.38217 * 119.99903 * 225.90295 * 17 14 12 27 27 H 1.09001 * 109.47217 * 182.85091 * 1 2 3 28 28 H 1.09000 * 109.46898 * 302.85614 * 1 2 3 29 29 H 1.09007 * 109.46856 * 62.85049 * 1 2 3 30 30 H 1.08993 * 109.47089 * 240.00126 * 2 1 3 31 31 H 1.08999 * 109.46933 * 119.99524 * 2 1 3 32 32 H 0.96995 * 119.99779 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47210 * 304.54023 * 15 14 12 34 34 H 1.08997 * 109.47125 * 64.54380 * 15 14 12 35 35 H 1.09001 * 109.47162 * 184.53691 * 15 14 12 36 36 H 0.96698 * 113.99845 * 63.91575 * 16 14 12 37 37 H 1.07997 * 120.00045 * 0.28095 * 18 17 14 38 38 H 1.07999 * 119.99902 * 179.97438 * 19 18 17 39 39 H 1.07994 * 119.99758 * 179.97438 * 20 19 18 40 40 H 1.07995 * 119.99605 * 359.73141 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3056 2.0067 -1.1856 5 1 2.7024 3.0112 -1.1840 6 6 2.0860 1.3484 -2.3894 7 7 1.1251 0.4571 -2.4853 8 14 3.1569 1.7303 -3.8717 9 1 4.2688 0.7488 -3.9451 10 1 2.3391 1.6453 -5.1082 11 1 3.7141 3.1005 -3.7399 12 6 2.1854 2.0370 1.1655 13 8 2.0069 1.4595 2.2172 14 6 2.5938 3.4876 1.1622 15 6 2.5564 4.0312 2.5919 16 8 3.9189 3.6081 0.6413 17 6 1.6415 4.2755 0.3002 18 6 0.2780 4.0790 0.4182 19 6 -0.5951 4.7969 -0.3772 20 6 -0.1051 5.7123 -1.2901 21 6 1.2579 5.9091 -1.4078 22 6 1.7921 6.9064 -2.4033 23 9 2.0143 6.2690 -3.6286 24 9 0.8618 7.9371 -2.5758 25 9 2.9958 7.4392 -1.9296 26 6 2.1313 5.1907 -0.6125 27 1 -0.3634 -1.0264 0.0511 28 1 -0.3633 0.5575 0.8633 29 1 -0.3633 0.4690 -0.9145 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.9721 -0.0026 -3.3256 33 1 1.5667 3.8659 3.0177 34 1 3.3027 3.5156 3.1963 35 1 2.7732 5.0993 2.5803 36 1 4.0042 3.3377 -0.2832 37 1 -0.1048 3.3641 1.1314 38 1 -1.6601 4.6431 -0.2853 39 1 -0.7873 6.2729 -1.9119 40 1 3.1963 5.3441 -0.7047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764876681.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:03 Heat of formation + Delta-G solvation = -203.024851 kcal Electronic energy + Delta-G solvation = -30853.578392 eV Core-core repulsion = 26218.794306 eV Total energy + Delta-G solvation = -4634.784087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -51.16864 -48.67613 -48.63654 -41.79854 -39.78637 -37.72172 -37.05271 -33.67513 -33.54319 -32.44788 -31.58524 -30.56294 -27.10338 -26.81272 -25.69608 -23.83882 -23.20065 -22.35753 -20.90109 -19.72077 -19.59288 -19.47929 -19.33920 -17.96402 -17.41391 -17.01680 -16.37467 -16.28379 -16.11502 -15.55055 -15.48611 -15.40915 -15.19387 -15.10776 -14.97792 -14.79568 -14.75970 -14.69915 -14.19699 -13.77708 -13.76282 -13.59010 -13.34027 -13.18184 -13.14954 -12.99270 -12.80881 -12.61774 -12.49134 -12.22012 -12.20982 -12.08914 -11.66207 -11.61467 -10.83133 -10.33803 -10.10647 -9.82410 -9.57004 -8.38402 -5.80423 -0.00113 0.29199 1.35156 1.49570 1.54818 1.64917 1.87067 2.24422 2.49948 2.71031 2.88132 2.97532 3.03935 3.34380 3.43143 3.57568 3.91209 4.05826 4.12589 4.21165 4.28910 4.47375 4.56228 4.65520 4.79676 4.81164 4.88308 4.90522 4.92163 5.10776 5.14629 5.20411 5.31781 5.35881 5.40413 5.49717 5.74215 5.80310 5.81260 6.40755 6.56066 7.09576 7.54442 7.96211 8.61086 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.011404 B = 0.006567 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.624565 B = 4263.012967 C = 5283.186829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.127 3.873 3 N -0.426 5.426 4 C -0.365 4.365 5 H 0.115 0.885 6 C 0.024 3.976 7 N -0.851 5.851 8 Si 0.948 3.052 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.258 1.258 12 C 0.415 3.585 13 O -0.634 6.634 14 C 0.176 3.824 15 C -0.110 4.110 16 O -0.556 6.556 17 C -0.088 4.088 18 C -0.072 4.072 19 C -0.109 4.109 20 C -0.072 4.072 21 C -0.190 4.190 22 C 0.514 3.486 23 F -0.184 7.184 24 F -0.173 7.173 25 F -0.179 7.179 26 C -0.069 4.069 27 H 0.053 0.947 28 H 0.018 0.982 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.029 0.971 32 H 0.273 0.727 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.387 0.613 37 H 0.113 0.887 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.402 10.319 -1.475 10.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.004 3.996 3 N -0.143 5.143 4 C -0.491 4.491 5 H 0.132 0.868 6 C -0.183 4.183 7 N -0.487 5.487 8 Si 0.773 3.227 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.181 1.181 12 C 0.203 3.797 13 O -0.524 6.524 14 C 0.132 3.868 15 C -0.168 4.168 16 O -0.366 6.366 17 C -0.089 4.089 18 C -0.090 4.090 19 C -0.127 4.127 20 C -0.090 4.090 21 C -0.191 4.191 22 C 0.460 3.540 23 F -0.165 7.165 24 F -0.155 7.155 25 F -0.160 7.160 26 C -0.087 4.087 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.240 0.760 37 H 0.131 0.869 38 H 0.175 0.825 39 H 0.174 0.826 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.445 10.121 -0.600 10.429 hybrid contribution 0.436 -0.465 -1.575 1.700 sum -2.009 9.655 -2.175 10.099 Atomic orbital electron populations 1.21806 0.95492 1.00281 1.00801 1.21273 0.95363 0.83423 0.99562 1.44043 1.53550 1.11436 1.05222 1.19939 1.44380 1.02042 0.82764 0.86766 1.25660 0.95682 0.96445 1.00486 1.70218 1.24502 1.26401 1.27542 0.85576 0.79190 0.79613 0.78339 1.20221 1.21124 1.18125 1.20969 0.85152 0.89974 0.83574 1.90501 1.60142 1.69597 1.32143 1.20032 0.81779 0.89903 0.95036 1.21487 1.03094 1.01157 0.91043 1.86459 1.27500 1.88906 1.33755 1.20056 0.94847 0.96781 0.97192 1.21101 0.92746 0.96944 0.98225 1.21284 1.01092 0.95273 0.95052 1.21119 0.93113 0.97244 0.97539 1.19903 0.96297 1.02042 1.00879 1.18223 0.75422 0.80187 0.80124 1.93222 1.94736 1.81948 1.46584 1.93175 1.65585 1.60916 1.95790 1.93179 1.47239 1.87363 1.88210 1.20653 1.00360 0.94126 0.93560 0.92844 0.96291 0.90566 0.89566 0.95208 0.91662 0.90773 0.92085 0.89941 0.76001 0.86925 0.82481 0.82575 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.41 9.79 71.98 0.70 -4.71 16 2 C 0.13 5.91 5.34 86.38 0.46 6.37 16 3 N -0.43 -19.83 2.63 -635.54 -1.67 -21.50 16 4 C -0.37 -16.36 7.63 84.04 0.64 -15.72 16 5 H 0.12 4.81 2.86 -2.91 -0.01 4.80 16 6 C 0.02 1.06 4.86 84.93 0.41 1.48 16 7 N -0.85 -39.14 8.67 21.66 0.19 -38.95 16 8 Si 0.95 36.63 29.65 68.60 2.03 38.66 16 9 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 10 H -0.29 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 12 C 0.41 19.16 5.74 87.66 0.50 19.66 16 13 O -0.63 -32.72 15.60 -3.09 -0.05 -32.77 16 14 C 0.18 6.81 0.92 -12.29 -0.01 6.80 16 15 C -0.11 -3.79 8.06 71.98 0.58 -3.21 16 16 O -0.56 -21.14 11.82 -148.98 -1.76 -22.90 16 17 C -0.09 -3.07 2.76 -19.87 -0.05 -3.13 16 18 C -0.07 -2.40 9.06 22.27 0.20 -2.20 16 19 C -0.11 -3.00 10.05 22.27 0.22 -2.78 16 20 C -0.07 -1.90 9.40 22.27 0.21 -1.69 16 21 C -0.19 -5.56 5.45 -19.87 -0.11 -5.67 16 22 C 0.51 14.21 3.36 71.23 0.24 14.45 16 23 F -0.18 -5.56 17.30 44.97 0.78 -4.78 16 24 F -0.17 -4.33 16.46 44.97 0.74 -3.59 16 25 F -0.18 -4.94 16.46 44.97 0.74 -4.20 16 26 C -0.07 -2.22 7.32 22.27 0.16 -2.05 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.08 3.49 6.31 -2.38 -0.02 3.47 16 30 H 0.09 4.14 5.81 -2.39 -0.01 4.13 16 31 H 0.03 1.43 7.46 -2.39 -0.02 1.41 16 32 H 0.27 12.01 8.31 -92.71 -0.77 11.24 16 33 H 0.07 2.49 8.06 -2.39 -0.02 2.47 16 34 H 0.06 2.19 8.13 -2.39 -0.02 2.17 16 35 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.39 14.24 5.79 -74.06 -0.43 13.81 16 37 H 0.11 4.03 7.60 -2.91 -0.02 4.01 16 38 H 0.16 3.36 8.06 -2.91 -0.02 3.33 16 39 H 0.16 3.20 7.60 -2.91 -0.02 3.18 16 40 H 0.14 4.31 6.54 -2.91 -0.02 4.29 16 Total: -1.00 -54.21 336.63 5.85 -48.36 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: 0.68 Total: 34.06 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 4.17 Total: 7.61 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -1.48 Total: -60.45 kcal Atomic # 8 Polarization: -53.86 SS G_CDS: -1.81 Total: -55.67 kcal Atomic # 9 Polarization: -14.83 SS G_CDS: 2.26 Total: -12.57 kcal Atomic # 14 Polarization: 36.63 SS G_CDS: 2.03 Total: 38.66 kcal Total: -54.21 5.85 -48.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764876681.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.666 kcal (2) G-P(sol) polarization free energy of solvation -54.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds