Wall clock time and date at job start Tue Mar 31 2020 15:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.34454 * 124.92533 * 2 1 4 4 C 1.34811 * 110.88988 * 180.02562 * 3 2 1 5 5 C 1.38937 * 133.49075 * 179.97438 * 4 3 2 6 6 C 1.37848 * 119.81500 * 179.97438 * 5 4 3 7 7 C 1.38740 * 120.68693 * 0.02562 * 6 5 4 8 8 C 1.36738 * 120.41800 * 0.02562 * 7 6 5 9 9 C 1.39412 * 119.71659 * 359.68311 * 8 7 6 10 10 C 1.33997 * 124.92434 * 180.02562 * 2 1 3 11 11 C 1.50703 * 126.90531 * 359.96021 * 10 2 1 12 12 C 1.50701 * 109.47064 * 90.02162 * 11 10 2 13 13 O 1.20826 * 119.99939 * 0.02562 * 12 11 10 14 14 O 1.34230 * 120.00046 * 179.97438 * 12 11 10 15 15 C 1.45192 * 117.00018 * 180.02562 * 14 12 11 16 16 C 1.50707 * 109.47278 * 180.02562 * 15 14 12 17 17 O 1.21283 * 119.99756 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00197 * 179.97438 * 16 15 14 19 19 C 1.46497 * 119.99793 * 179.97438 * 18 16 15 20 20 C 1.50699 * 109.47086 * 180.02562 * 19 18 16 21 21 H 1.08007 * 119.99869 * 0.02562 * 20 19 18 22 22 C 1.37873 * 120.00133 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99905 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 120.00159 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47459 * 89.99742 * 24 22 20 26 26 H 1.48503 * 109.47307 * 210.00247 * 24 22 20 27 27 H 1.48508 * 109.46837 * 329.99649 * 24 22 20 28 28 H 1.08996 * 109.47305 * 269.98246 * 1 2 3 29 29 H 1.08998 * 109.46800 * 29.97742 * 1 2 3 30 30 H 1.08999 * 109.47116 * 149.97671 * 1 2 3 31 31 H 1.08001 * 120.09718 * 359.97142 * 5 4 3 32 32 H 1.08011 * 119.65447 * 179.97438 * 6 5 4 33 33 H 1.07997 * 119.79169 * 180.02562 * 7 6 5 34 34 H 1.07996 * 120.13973 * 180.02562 * 8 7 6 35 35 H 1.09002 * 109.47152 * 330.02255 * 11 10 2 36 36 H 1.09001 * 109.46980 * 210.02355 * 11 10 2 37 37 H 1.09001 * 109.47630 * 300.00318 * 15 14 12 38 38 H 1.08998 * 109.47321 * 60.00129 * 15 14 12 39 39 H 0.96999 * 119.99738 * 0.02562 * 18 16 15 40 40 H 1.08992 * 109.47623 * 300.00311 * 19 18 16 41 41 H 1.08998 * 109.46832 * 60.00650 * 19 18 16 42 42 H 0.97000 * 119.99889 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2767 1.1024 0.0000 4 6 3.5846 0.7754 -0.0006 5 6 4.7567 1.5214 -0.0013 6 6 5.9770 0.8804 -0.0012 7 6 6.0491 -0.5051 -0.0010 8 6 4.9074 -1.2577 -0.0013 9 6 3.6641 -0.6272 0.0047 10 6 2.2741 -1.0986 -0.0005 11 6 1.8041 -2.5305 -0.0003 12 6 1.6472 -3.0079 -1.4211 13 8 1.8923 -2.2621 -2.3395 14 8 1.2361 -4.2620 -1.6662 15 6 1.1079 -4.6533 -3.0585 16 6 0.6385 -6.0833 -3.1372 17 8 0.4318 -6.7105 -2.1200 18 7 0.4473 -6.6647 -4.3380 19 6 -0.0084 -8.0548 -4.4145 20 6 -0.1416 -8.4611 -5.8595 21 1 0.0906 -7.7545 -6.6427 22 6 -0.5597 -9.7347 -6.1819 23 7 -0.6754 -10.0894 -7.4431 24 14 -0.9619 -10.9566 -4.8274 25 1 -2.3986 -10.8435 -4.4693 26 1 -0.6772 -12.3343 -5.3030 27 1 -0.1294 -10.6634 -3.6331 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 4.7119 2.6005 -0.0019 32 1 6.8866 1.4629 -0.0021 33 1 7.0129 -0.9923 -0.0005 34 1 4.9687 -2.3359 -0.0008 35 1 0.8453 -2.5982 0.5137 36 1 2.5365 -3.1532 0.5135 37 1 0.3837 -4.0058 -3.5528 38 1 2.0750 -4.5604 -3.5526 39 1 0.6123 -6.1629 -5.1516 40 1 0.7159 -8.7024 -3.9207 41 1 -0.9754 -8.1478 -3.9200 42 1 -0.9692 -10.9856 -7.6699 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767729995.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:58 Heat of formation + Delta-G solvation = -118.181269 kcal Electronic energy + Delta-G solvation = -26641.432965 eV Core-core repulsion = 22552.184713 eV Total energy + Delta-G solvation = -4089.248253 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.56715 -41.70550 -40.41888 -38.85658 -37.66691 -36.20660 -35.45713 -34.46592 -32.18765 -31.75534 -31.28018 -30.35877 -28.69959 -27.37431 -24.25097 -23.96202 -22.94680 -22.52242 -21.72901 -20.85241 -19.38627 -18.90166 -18.31284 -18.17117 -17.80648 -17.66827 -17.40304 -16.97705 -16.66962 -16.36545 -16.27497 -15.79702 -15.15119 -14.85452 -14.81886 -14.68819 -14.35606 -14.26920 -14.06104 -14.00578 -13.74436 -13.66551 -13.17984 -13.12803 -13.08524 -13.05466 -12.70657 -12.52197 -11.93504 -11.91869 -11.83989 -11.78036 -11.67121 -11.00811 -10.92552 -10.88643 -10.04798 -9.61424 -9.07034 -8.40177 -6.48026 -0.08975 0.36182 0.94658 1.07992 1.34055 1.36410 1.48057 1.50848 1.52369 1.69040 2.28299 2.51543 2.75963 2.95117 3.35853 3.46662 3.62175 3.75791 3.78777 3.99361 4.03389 4.08919 4.10758 4.26636 4.39005 4.40694 4.47414 4.54925 4.63047 4.70677 4.74598 4.83861 5.00300 5.00387 5.20216 5.24656 5.25249 5.33864 5.39338 5.45208 5.50149 5.71696 6.05164 6.15226 6.51351 6.59013 6.72138 7.10863 7.26258 8.74348 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.024039 B = 0.001983 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.481357 B =14118.621360 C =14555.399340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.052 3.948 3 O -0.205 6.205 4 C 0.020 3.980 5 C -0.115 4.115 6 C -0.094 4.094 7 C -0.133 4.133 8 C -0.093 4.093 9 C -0.135 4.135 10 C -0.193 4.193 11 C -0.031 4.031 12 C 0.464 3.536 13 O -0.526 6.526 14 O -0.343 6.343 15 C 0.058 3.942 16 C 0.506 3.494 17 O -0.576 6.576 18 N -0.698 5.698 19 C 0.232 3.768 20 C -0.549 4.549 21 H 0.060 0.940 22 C 0.025 3.975 23 N -0.931 5.931 24 Si 0.939 3.061 25 H -0.264 1.264 26 H -0.274 1.274 27 H -0.258 1.258 28 H 0.115 0.885 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.149 0.851 32 H 0.167 0.833 33 H 0.155 0.845 34 H 0.133 0.867 35 H 0.148 0.852 36 H 0.135 0.865 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.412 0.588 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.571 24.670 19.098 32.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.004 3.996 3 O -0.107 6.107 4 C -0.026 4.026 5 C -0.133 4.133 6 C -0.112 4.112 7 C -0.151 4.151 8 C -0.111 4.111 9 C -0.136 4.136 10 C -0.194 4.194 11 C -0.068 4.068 12 C 0.308 3.692 13 O -0.415 6.415 14 O -0.259 6.259 15 C -0.019 4.019 16 C 0.292 3.708 17 O -0.456 6.456 18 N -0.349 5.349 19 C 0.109 3.891 20 C -0.587 4.587 21 H 0.078 0.922 22 C -0.175 4.175 23 N -0.569 5.569 24 Si 0.762 3.238 25 H -0.189 1.189 26 H -0.200 1.200 27 H -0.182 1.182 28 H 0.133 0.867 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.167 0.833 32 H 0.185 0.815 33 H 0.172 0.828 34 H 0.151 0.849 35 H 0.165 0.835 36 H 0.152 0.848 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.248 0.752 40 H 0.036 0.964 41 H 0.035 0.965 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.340 24.535 19.375 32.628 hybrid contribution -0.143 -0.682 -0.677 0.971 sum 9.197 23.853 18.698 31.673 Atomic orbital electron populations 1.20683 0.82278 1.05320 1.05778 1.22761 0.95200 0.82879 0.98722 1.83930 1.15528 1.34469 1.76758 1.20005 0.83625 0.94026 1.04962 1.20340 0.87876 1.00814 1.04293 1.21364 0.97182 0.94819 0.97831 1.21182 0.98956 0.94346 1.00579 1.20569 0.90385 1.00867 0.99242 1.20030 0.94364 0.93451 1.05740 1.20250 0.91227 0.94678 1.13261 1.19680 1.07126 0.91062 0.88923 1.24323 0.72384 0.78718 0.93801 1.90688 1.47062 1.56084 1.47641 1.86553 1.78312 1.31932 1.29080 1.22693 1.05289 0.92518 0.81396 1.20548 0.77943 0.88748 0.83598 1.90678 1.52931 1.66183 1.35813 1.45877 1.66506 1.14725 1.07819 1.19173 0.94416 0.79406 0.96094 1.21276 1.47073 0.99275 0.91047 0.92150 1.25622 0.94248 0.99921 0.97737 1.69986 1.47336 1.20963 1.18642 0.85841 0.79783 0.78470 0.79711 1.18884 1.19954 1.18215 0.86715 0.89157 0.88657 0.83308 0.81522 0.82770 0.84893 0.83479 0.84750 0.86024 0.86422 0.75159 0.96448 0.96455 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.00 71.23 0.71 -0.26 16 2 C 0.05 1.03 7.23 24.72 0.18 1.21 16 3 O -0.20 -4.72 10.58 -9.00 -0.10 -4.81 16 4 C 0.02 0.46 7.42 22.99 0.17 0.63 16 5 C -0.11 -1.94 10.07 22.34 0.23 -1.71 16 6 C -0.09 -1.24 10.01 22.30 0.22 -1.01 16 7 C -0.13 -1.93 9.98 22.04 0.22 -1.71 16 8 C -0.09 -1.76 10.05 22.20 0.22 -1.53 16 9 C -0.14 -3.06 6.38 -20.21 -0.13 -3.18 16 10 C -0.19 -4.00 4.84 -18.59 -0.09 -4.09 16 11 C -0.03 -0.52 5.90 29.10 0.17 -0.35 16 12 C 0.46 11.11 7.95 71.24 0.57 11.68 16 13 O -0.53 -15.40 15.78 21.97 0.35 -15.05 16 14 O -0.34 -9.41 9.75 -45.06 -0.44 -9.85 16 15 C 0.06 1.56 5.94 71.24 0.42 1.98 16 16 C 0.51 18.36 7.91 87.66 0.69 19.06 16 17 O -0.58 -25.63 16.50 15.76 0.26 -25.37 16 18 N -0.70 -26.81 5.55 -466.80 -2.59 -29.40 16 19 C 0.23 11.06 4.50 85.63 0.38 11.44 16 20 C -0.55 -29.68 9.83 25.60 0.25 -29.43 16 21 H 0.06 3.43 7.84 -2.91 -0.02 3.41 16 22 C 0.03 1.40 5.47 84.65 0.46 1.86 16 23 N -0.93 -54.98 13.96 21.45 0.30 -54.68 16 24 Si 0.94 43.17 27.47 68.60 1.88 45.05 16 25 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 26 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 27 H -0.26 -11.68 6.54 99.48 0.65 -11.03 16 28 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 1.03 7.68 -2.39 -0.02 1.01 16 31 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 32 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 33 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 34 H 0.13 2.16 8.06 -2.91 -0.02 2.13 16 35 H 0.15 1.60 7.72 -2.39 -0.02 1.58 16 36 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.12 2.75 8.13 -2.39 -0.02 2.73 16 38 H 0.12 2.75 8.13 -2.39 -0.02 2.73 16 39 H 0.41 13.62 8.32 -92.71 -0.77 12.84 16 40 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 41 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 42 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -77.70 371.40 4.59 -73.11 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.24 Total: 16.42 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 4.69 Total: 4.57 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -2.29 Total: -84.08 kcal Atomic # 8 Polarization: -55.15 SS G_CDS: 0.07 Total: -55.08 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.88 Total: 45.05 kcal Total: -77.70 4.59 -73.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767729995.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.074 kcal (2) G-P(sol) polarization free energy of solvation -77.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds