Wall clock time and date at job start Tue Mar 31 2020 18:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47077 * 2 1 4 4 C 1.46498 * 119.99998 * 270.00263 * 3 2 1 5 5 C 1.50706 * 109.46753 * 269.99721 * 4 3 2 6 6 H 1.07996 * 120.00238 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00011 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99636 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00215 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47178 * 60.00015 * 9 7 5 11 11 H 1.48498 * 109.47118 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46997 * 299.99848 * 9 7 5 13 13 C 1.34775 * 119.99871 * 90.00086 * 3 2 1 14 14 O 1.21283 * 120.00054 * 180.02562 * 13 3 2 15 15 C 1.50706 * 120.00023 * 359.97438 * 13 3 2 16 16 O 1.45201 * 109.47064 * 180.02562 * 15 13 3 17 17 C 1.34222 * 117.00137 * 180.02562 * 16 15 13 18 18 O 1.20833 * 119.99852 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00432 * 179.71953 * 17 16 15 20 20 O 1.42907 * 109.21832 * 35.87690 * 19 17 16 21 21 C 1.52577 * 109.22969 * 276.51693 * 19 17 16 22 22 C 1.53100 * 109.95675 * 168.99986 * 21 19 17 23 23 S 1.81740 * 108.84082 * 63.02485 * 22 21 19 24 24 C 1.81753 * 102.22411 * 306.73357 * 23 22 21 25 25 C 1.52581 * 109.22865 * 155.27582 * 19 17 16 26 26 H 1.08995 * 109.47225 * 299.99952 * 1 2 3 27 27 H 1.09006 * 109.47348 * 60.00086 * 1 2 3 28 28 H 1.09008 * 109.46986 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47047 * 240.00271 * 2 1 3 30 30 H 1.08998 * 109.46769 * 120.00502 * 2 1 3 31 31 H 1.09000 * 109.47388 * 29.99646 * 4 3 2 32 32 H 1.08999 * 109.47386 * 150.00109 * 4 3 2 33 33 H 0.97008 * 119.99337 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.46698 * 60.00246 * 15 13 3 35 35 H 1.08997 * 109.46779 * 300.00365 * 15 13 3 36 36 H 0.96702 * 113.99734 * 299.99485 * 20 19 17 37 37 H 1.09003 * 109.38818 * 289.14894 * 21 19 17 38 38 H 1.09005 * 109.39152 * 48.84970 * 21 19 17 39 39 H 1.09004 * 109.57705 * 303.21541 * 22 21 19 40 40 H 1.09003 * 109.68059 * 182.89486 * 22 21 19 41 41 H 1.08998 * 109.57364 * 293.46505 * 24 23 22 42 42 H 1.08993 * 109.68820 * 173.13442 * 24 23 22 43 43 H 1.08998 * 109.38869 * 311.14813 * 25 19 17 44 44 H 1.08999 * 109.38623 * 70.85014 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3426 1.2303 -1.0962 7 6 4.1494 2.3905 -2.8774 8 7 3.3496 3.1274 -3.6170 9 14 5.9134 2.0964 -3.4170 10 1 6.1402 0.6398 -3.5954 11 1 6.1613 2.7976 -4.7023 12 1 6.8413 2.6188 -2.3818 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9912 1.3062 2.4723 16 8 2.3053 2.1960 3.5760 17 6 2.1343 1.7123 4.8163 18 8 1.7358 0.5826 4.9746 19 6 2.4458 2.5757 6.0114 20 8 2.0900 3.9287 5.7199 21 6 3.9407 2.5031 6.3079 22 6 4.3226 3.5732 7.3341 23 16 3.4528 3.2290 8.8923 24 6 1.7228 3.1070 8.3485 25 6 1.6337 2.0894 7.2081 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.5817 1.6877 -2.0284 32 1 2.0955 3.1410 -1.1384 33 1 3.6760 3.5185 -4.4426 34 1 2.6211 0.4186 2.5302 35 1 0.9432 1.0124 2.5298 36 1 2.5601 4.3047 4.9631 37 1 4.1833 1.5175 6.7054 38 1 4.5007 2.6682 5.3874 39 1 4.0315 4.5558 6.9627 40 1 5.3990 3.5512 7.5042 41 1 1.3811 4.0804 7.9968 42 1 1.0988 2.7793 9.1799 43 1 0.5917 1.9674 6.9127 44 1 2.0270 1.1309 7.5468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769810144.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:22 Heat of formation + Delta-G solvation = -193.043365 kcal Electronic energy + Delta-G solvation = -27011.185759 eV Core-core repulsion = 23054.135194 eV Total energy + Delta-G solvation = -3957.050565 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.23552 -40.78018 -39.29832 -37.79390 -37.01401 -34.95172 -34.75028 -32.72991 -31.78884 -30.87518 -29.15585 -28.12715 -25.01338 -24.38045 -24.26757 -23.42213 -21.45724 -20.37825 -19.59607 -18.67243 -18.44771 -18.26037 -17.76989 -17.64054 -17.18262 -16.86388 -16.31996 -15.97151 -15.77915 -15.10242 -14.89959 -14.83778 -14.75674 -14.61978 -14.20695 -14.07456 -13.91198 -13.74005 -13.61975 -13.48347 -13.30006 -13.10550 -12.92084 -12.80576 -12.67578 -12.53621 -12.31762 -12.25356 -12.09740 -11.85458 -11.75334 -11.59238 -11.20971 -10.77970 -10.70575 -10.65122 -9.57018 -8.70836 -8.24183 -6.38922 0.77288 0.81010 1.06010 1.37222 1.40965 1.48127 1.53223 1.58671 2.24062 2.40709 2.94597 3.06053 3.18186 3.33842 3.38053 3.47720 3.78271 3.83218 3.91137 4.09320 4.11896 4.16300 4.34130 4.35011 4.37390 4.55827 4.65807 4.69455 4.77983 4.84956 4.86757 4.91904 5.00505 5.03559 5.08204 5.18726 5.33377 5.51940 5.77365 6.02487 6.24388 6.43067 6.59190 6.70109 7.18480 7.34756 8.83084 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.017651 B = 0.002731 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.918599 B =10251.637621 C =11216.721995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.546 4.546 6 H 0.055 0.945 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.500 3.500 14 O -0.574 6.574 15 C 0.061 3.939 16 O -0.342 6.342 17 C 0.442 3.558 18 O -0.512 6.512 19 C 0.155 3.845 20 O -0.543 6.543 21 C -0.146 4.146 22 C -0.065 4.065 23 S -0.291 6.291 24 C -0.065 4.065 25 C -0.097 4.097 26 H 0.056 0.944 27 H 0.044 0.956 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.028 0.972 32 H 0.000 1.000 33 H 0.268 0.732 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.401 0.599 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.125 0.875 41 H 0.094 0.906 42 H 0.126 0.874 43 H 0.087 0.913 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.263 -5.637 22.176 23.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.585 4.585 6 H 0.074 0.926 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.202 1.202 13 C 0.287 3.713 14 O -0.454 6.454 15 C -0.016 4.016 16 O -0.258 6.258 17 C 0.284 3.716 18 O -0.400 6.400 19 C 0.112 3.888 20 O -0.352 6.352 21 C -0.186 4.186 22 C -0.213 4.213 23 S -0.065 6.065 24 C -0.212 4.212 25 C -0.136 4.136 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.046 0.954 32 H 0.018 0.982 33 H 0.077 0.923 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.253 0.747 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.143 0.857 41 H 0.113 0.887 42 H 0.144 0.856 43 H 0.105 0.895 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.164 -5.473 23.538 24.373 hybrid contribution 0.548 0.257 -2.685 2.753 sum -2.616 -5.216 20.853 21.654 Atomic orbital electron populations 1.22180 0.94385 1.03789 1.01815 1.21864 0.95509 0.81037 1.04416 1.48205 1.63541 1.15228 1.05738 1.18790 0.95588 0.91683 0.79722 1.21671 0.97794 1.32287 1.06710 0.92642 1.25841 1.02356 0.94400 0.96382 1.70045 1.37826 1.33971 1.14841 0.85478 0.79025 0.79013 0.77373 1.18482 1.20455 1.20221 1.20480 0.78416 0.86677 0.85717 1.90678 1.47079 1.19943 1.87706 1.22860 1.04665 0.92087 0.81942 1.86517 1.78527 1.45725 1.14992 1.25249 0.73779 0.87693 0.84875 1.90663 1.42350 1.20448 1.86574 1.21169 0.97141 0.81623 0.88860 1.86535 1.69522 1.24026 1.55149 1.22403 0.92468 1.02109 1.01595 1.23329 1.03615 1.01463 0.92881 1.86985 1.07141 1.94520 1.17807 1.23322 0.94306 1.02810 1.00805 1.21667 1.01035 0.99598 0.91274 0.92482 0.93689 0.88399 0.89986 0.88397 0.95355 0.98151 0.92342 0.86364 0.86280 0.74708 0.88238 0.88818 0.88358 0.85716 0.88717 0.85600 0.89459 0.87837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 10.24 71.98 0.74 -3.12 16 2 C 0.09 2.70 5.93 86.38 0.51 3.21 16 3 N -0.59 -24.25 2.46 -826.15 -2.03 -26.28 16 4 C 0.26 13.79 5.16 85.64 0.44 14.23 16 5 C -0.55 -30.68 9.39 25.60 0.24 -30.44 16 6 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.54 5.46 84.65 0.46 1.00 16 8 N -0.93 -55.15 13.29 21.45 0.28 -54.86 16 9 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 10 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 13 C 0.50 20.30 7.75 87.66 0.68 20.98 16 14 O -0.57 -29.16 16.08 15.76 0.25 -28.91 16 15 C 0.06 1.77 4.50 71.24 0.32 2.09 16 16 O -0.34 -9.95 9.18 -42.65 -0.39 -10.35 16 17 C 0.44 10.77 6.72 71.23 0.48 11.25 16 18 O -0.51 -13.70 16.00 21.94 0.35 -13.35 16 19 C 0.16 2.88 0.91 -11.82 -0.01 2.87 16 20 O -0.54 -10.35 10.60 -135.68 -1.44 -11.78 16 21 C -0.15 -2.27 4.81 30.49 0.15 -2.12 16 22 C -0.06 -0.91 6.26 72.02 0.45 -0.46 16 23 S -0.29 -4.79 22.33 -56.49 -1.26 -6.05 16 24 C -0.06 -0.93 6.26 72.02 0.45 -0.48 16 25 C -0.10 -1.57 4.24 30.49 0.13 -1.44 16 26 H 0.06 1.27 7.22 -2.39 -0.02 1.25 16 27 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.08 2.48 8.07 -2.39 -0.02 2.46 16 30 H 0.10 2.16 6.44 -2.39 -0.02 2.15 16 31 H 0.03 1.51 8.07 -2.39 -0.02 1.49 16 32 H 0.00 0.02 7.42 -2.39 -0.02 0.00 16 33 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 34 H 0.12 2.92 7.39 -2.39 -0.02 2.91 16 35 H 0.12 2.91 7.18 -2.39 -0.02 2.89 16 36 H 0.40 6.91 8.61 -74.06 -0.64 6.27 16 37 H 0.10 1.48 8.06 -2.39 -0.02 1.46 16 38 H 0.09 1.47 8.08 -2.38 -0.02 1.45 16 39 H 0.10 1.38 7.35 -2.39 -0.02 1.36 16 40 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.09 1.48 7.35 -2.39 -0.02 1.46 16 42 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.09 1.45 8.08 -2.39 -0.02 1.43 16 44 H 0.10 1.61 8.06 -2.39 -0.02 1.60 16 Total: -1.00 -74.06 374.50 3.21 -70.85 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.38 Total: 17.23 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: 5.04 Total: 17.58 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -1.74 Total: -81.14 kcal Atomic # 8 Polarization: -63.16 SS G_CDS: -1.23 Total: -64.38 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -4.79 SS G_CDS: -1.26 Total: -6.05 kcal Total: -74.06 3.21 -70.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769810144.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.197 kcal (2) G-P(sol) polarization free energy of solvation -74.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds