Wall clock time and date at job start Tue Mar 31 2020 18:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47070 * 2 1 4 4 O 1.45204 * 109.46936 * 240.00388 * 2 1 3 5 5 C 1.34230 * 117.00080 * 90.00121 * 4 2 1 6 6 O 1.20824 * 119.99744 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00073 * 180.02562 * 5 4 2 8 8 O 1.42901 * 109.18593 * 35.61377 * 7 5 4 9 9 C 1.52575 * 109.22719 * 154.99595 * 7 5 4 10 10 C 1.53098 * 109.95645 * 190.99540 * 9 7 5 11 11 S 1.81750 * 108.94655 * 296.91281 * 10 9 7 12 12 C 1.82094 * 102.08448 * 53.22466 * 11 10 9 13 13 C 1.52580 * 109.22230 * 276.23540 * 7 5 4 14 14 C 1.50697 * 109.47274 * 120.00573 * 2 1 3 15 15 O 1.21281 * 120.00646 * 119.99829 * 14 2 1 16 16 N 1.34781 * 119.99904 * 299.99509 * 14 2 1 17 17 C 1.46501 * 119.99703 * 0.02562 * 16 14 2 18 18 C 1.46496 * 120.00190 * 180.02562 * 16 14 2 19 19 C 1.50692 * 109.47289 * 90.00232 * 18 16 14 20 20 H 1.08009 * 120.00214 * 359.97438 * 19 18 16 21 21 C 1.37878 * 120.00522 * 180.02562 * 19 18 16 22 22 N 1.31514 * 119.99558 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00583 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46956 * 59.99636 * 23 21 19 25 25 H 1.48493 * 109.47054 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46673 * 299.99724 * 23 21 19 27 27 H 1.08994 * 109.46952 * 59.99345 * 1 2 3 28 28 H 1.09001 * 109.47070 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46687 * 299.99727 * 1 2 3 30 30 H 0.96696 * 114.00315 * 299.37956 * 8 7 5 31 31 H 1.09000 * 109.38811 * 70.84846 * 9 7 5 32 32 H 1.08996 * 109.39110 * 311.14405 * 9 7 5 33 33 H 1.09002 * 109.57593 * 56.78475 * 10 9 7 34 34 H 1.09001 * 109.57569 * 177.04379 * 10 9 7 35 35 H 1.09000 * 109.55632 * 186.96917 * 12 11 10 36 36 H 1.08999 * 109.64457 * 66.68222 * 12 11 10 37 37 H 1.08996 * 109.39045 * 289.14578 * 13 7 5 38 38 H 1.09004 * 109.39255 * 48.85710 * 13 7 5 39 39 H 1.08997 * 109.47278 * 89.99646 * 17 16 14 40 40 H 1.09006 * 109.46958 * 209.99539 * 17 16 14 41 41 H 1.08994 * 109.47178 * 329.99470 * 17 16 14 42 42 H 1.09002 * 109.47049 * 210.00467 * 18 16 14 43 43 H 1.08997 * 109.47082 * 330.00198 * 18 16 14 44 44 H 0.97007 * 119.99978 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2171 0.0641 -2.2812 6 8 1.9974 1.2518 -2.2505 7 6 2.7182 -0.5770 -3.5496 8 8 2.1521 -1.8835 -3.6707 9 6 2.2886 0.2694 -4.7441 10 6 2.5450 -0.4951 -6.0455 11 16 4.3309 -0.7859 -6.2170 12 6 4.7422 -1.5783 -4.6299 13 6 4.2384 -0.6918 -3.4879 14 6 2.0324 -0.7105 1.2304 15 8 2.7296 -1.6966 1.1191 16 7 1.7069 -0.2501 2.4545 17 6 0.8642 0.9408 2.5890 18 6 2.1956 -0.9404 3.6506 19 6 3.5229 -0.3564 4.0605 20 1 3.9591 0.4483 3.4871 21 6 4.1812 -0.8500 5.1670 22 7 3.6504 -1.8301 5.8649 23 14 5.8262 -0.1256 5.6755 24 1 5.6600 1.3199 5.9721 25 1 6.3217 -0.8254 6.8878 26 1 6.8043 -0.2951 4.5710 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 2.3818 -2.4805 -2.9456 31 1 2.8577 1.1990 -4.7523 32 1 1.2260 0.4981 -4.6621 33 1 2.0205 -1.4502 -6.0174 34 1 2.1880 0.0930 -6.8910 35 1 5.8228 -1.6971 -4.5506 36 1 4.2623 -2.5553 -4.5729 37 1 4.6802 0.3005 -3.5782 38 1 4.5298 -1.1307 -2.5336 39 1 -0.1836 0.6425 2.6225 40 1 1.1220 1.4663 3.5086 41 1 1.0274 1.5995 1.7361 42 1 1.4777 -0.8153 4.4612 43 1 2.3171 -2.0016 3.4335 44 1 4.1136 -2.1777 6.6431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769816332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:15 Heat of formation + Delta-G solvation = -164.684896 kcal Electronic energy + Delta-G solvation = -27392.757480 eV Core-core repulsion = 23436.936630 eV Total energy + Delta-G solvation = -3955.820850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.24536 -39.42775 -38.28057 -36.62646 -35.05163 -33.99572 -32.98907 -32.04366 -31.64236 -28.27447 -27.69691 -26.33516 -24.62328 -23.67305 -23.22137 -21.85927 -20.56872 -19.07121 -18.62894 -17.45296 -17.26289 -16.60177 -16.34090 -16.23628 -15.82170 -15.54524 -15.02461 -14.67477 -14.43956 -14.20229 -14.06413 -13.75929 -13.60072 -13.29544 -13.12821 -13.04188 -12.72961 -12.51246 -12.31144 -12.18064 -12.11991 -12.05614 -11.76313 -11.54304 -11.47922 -11.22123 -10.99758 -10.83584 -10.78409 -10.63479 -10.29737 -10.23333 -10.01013 -9.74191 -9.02271 -8.50747 -7.98976 -7.82313 -6.12071 -4.17564 1.45943 1.85269 2.19129 2.19835 3.14881 3.27357 3.31935 3.35253 3.65922 3.73842 4.06426 4.13447 4.32112 4.38491 4.48030 4.69858 4.80115 4.83373 4.89585 4.98207 5.01181 5.07368 5.22540 5.29500 5.38181 5.43440 5.48277 5.55493 5.56330 5.56549 5.73051 5.75511 5.90405 6.14075 6.23164 6.89232 7.05696 7.30493 7.36866 7.48474 7.83257 8.12785 8.19308 8.74961 8.90308 9.47741 10.96025 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.017120 B = 0.002934 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.090354 B = 9541.204355 C =10483.285418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.070 3.930 3 H 0.106 0.894 4 O -0.324 6.324 5 C 0.441 3.559 6 O -0.499 6.499 7 C 0.152 3.848 8 O -0.540 6.540 9 C -0.098 4.098 10 C -0.073 4.073 11 S -0.269 6.269 12 C -0.069 4.069 13 C -0.153 4.153 14 C 0.509 3.491 15 O -0.521 6.521 16 N -0.594 5.594 17 C 0.075 3.925 18 C 0.247 3.753 19 C -0.532 4.532 20 H 0.057 0.943 21 C 0.063 3.937 22 N -0.894 5.894 23 Si 0.899 3.101 24 H -0.276 1.276 25 H -0.285 1.285 26 H -0.276 1.276 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.396 0.604 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.037 0.963 43 H 0.046 0.954 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.474 3.905 -20.324 21.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.012 3.988 3 H 0.123 0.877 4 O -0.239 6.239 5 C 0.282 3.718 6 O -0.386 6.386 7 C 0.110 3.890 8 O -0.349 6.349 9 C -0.137 4.137 10 C -0.221 4.221 11 S -0.043 6.043 12 C -0.218 4.218 13 C -0.192 4.192 14 C 0.293 3.707 15 O -0.397 6.397 16 N -0.328 5.328 17 C -0.069 4.069 18 C 0.129 3.871 19 C -0.570 4.570 20 H 0.075 0.925 21 C -0.140 4.140 22 N -0.532 5.532 23 Si 0.727 3.273 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.201 1.201 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.246 0.754 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.064 0.936 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.717 4.081 -21.551 22.435 hybrid contribution 0.287 0.129 2.087 2.111 sum -4.430 4.210 -19.464 20.400 Atomic orbital electron populations 1.22398 0.92266 1.04211 1.04345 1.22670 0.95842 0.97634 0.82675 0.87652 1.86551 1.76140 1.41644 1.19529 1.24604 0.74583 0.86517 0.86076 1.90658 1.47321 1.16431 1.84213 1.21017 0.93537 0.84820 0.89669 1.86522 1.75319 1.21289 1.51724 1.21635 1.03985 0.97705 0.90355 1.23330 0.94223 1.04624 0.99953 1.86957 1.11037 1.80073 1.26193 1.23355 1.05013 1.01069 0.92315 1.22434 0.92990 1.03064 1.00702 1.19734 0.81729 0.85396 0.83805 1.90698 1.37064 1.26026 1.85886 1.48068 1.49684 1.28343 1.06664 1.21900 0.93990 0.88023 1.02985 1.19359 0.94393 0.93734 0.79659 1.21374 1.04878 1.19313 1.11470 0.92490 1.24930 0.98000 0.94889 0.96154 1.69918 1.39070 1.25880 1.18343 0.86540 0.83738 0.79094 0.77973 1.20182 1.21069 1.20144 0.91402 0.90891 0.88761 0.75360 0.88196 0.89362 0.88277 0.87333 0.87060 0.88498 0.88641 0.88619 0.92925 0.90206 0.92314 0.94545 0.93618 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 9.18 37.16 0.34 -1.84 16 2 C 0.07 1.11 2.18 -27.88 -0.06 1.05 16 3 H 0.11 1.63 6.42 -51.93 -0.33 1.30 16 4 O -0.32 -4.98 8.85 -48.36 -0.43 -5.41 16 5 C 0.44 5.96 6.70 36.01 0.24 6.20 16 6 O -0.50 -7.52 15.47 -18.75 -0.29 -7.81 16 7 C 0.15 1.59 0.90 -92.21 -0.08 1.50 16 8 O -0.54 -5.29 10.60 -49.27 -0.52 -5.81 16 9 C -0.10 -0.90 4.24 -26.90 -0.11 -1.02 16 10 C -0.07 -0.60 6.25 37.21 0.23 -0.37 16 11 S -0.27 -2.53 22.36 -107.50 -2.40 -4.94 16 12 C -0.07 -0.59 6.27 37.21 0.23 -0.35 16 13 C -0.15 -1.45 4.81 -26.90 -0.13 -1.58 16 14 C 0.51 10.45 7.15 -10.98 -0.08 10.37 16 15 O -0.52 -12.90 16.08 -14.10 -0.23 -13.12 16 16 N -0.59 -12.16 2.86 -182.96 -0.52 -12.69 16 17 C 0.07 1.12 8.80 59.85 0.53 1.64 16 18 C 0.25 6.27 5.16 -5.20 -0.03 6.25 16 19 C -0.53 -14.78 9.39 -34.44 -0.32 -15.10 16 20 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 23 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.09 1.03 4.53 -51.93 -0.24 0.80 16 30 H 0.40 3.34 8.62 45.56 0.39 3.74 16 31 H 0.10 0.93 8.06 -51.93 -0.42 0.51 16 32 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 33 H 0.10 0.84 7.36 -51.93 -0.38 0.46 16 34 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 0.78 7.36 -51.93 -0.38 0.40 16 37 H 0.10 0.92 8.06 -51.93 -0.42 0.50 16 38 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 39 H 0.05 0.65 6.95 -51.93 -0.36 0.29 16 40 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 41 H 0.06 0.74 6.01 -51.93 -0.31 0.43 16 42 H 0.04 0.92 8.07 -51.93 -0.42 0.51 16 43 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 44 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 368.63 15.07 5.56 5.56 Total: -1.00 -33.69 368.63 -8.21 -41.90 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.75 Total: 2.72 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 0.66 Total: 8.42 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.21 Total: -37.99 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -1.47 Total: -32.15 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -2.53 SS G_CDS: -2.40 Total: -4.94 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.69 -8.21 -41.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769816332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.788 kcal (2) G-P(sol) polarization free energy of solvation -33.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds