Wall clock time and date at job start Tue Mar 31 2020 18:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47070 * 2 1 4 4 O 1.45204 * 109.46936 * 240.00388 * 2 1 3 5 5 C 1.34230 * 117.00080 * 90.00121 * 4 2 1 6 6 O 1.20824 * 119.99744 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00073 * 180.02562 * 5 4 2 8 8 O 1.42901 * 109.18593 * 35.61377 * 7 5 4 9 9 C 1.52575 * 109.22719 * 154.99595 * 7 5 4 10 10 C 1.53098 * 109.95645 * 190.99540 * 9 7 5 11 11 S 1.81750 * 108.94655 * 296.91281 * 10 9 7 12 12 C 1.82094 * 102.08448 * 53.22466 * 11 10 9 13 13 C 1.52580 * 109.22230 * 276.23540 * 7 5 4 14 14 C 1.50697 * 109.47274 * 120.00573 * 2 1 3 15 15 O 1.21281 * 120.00646 * 119.99829 * 14 2 1 16 16 N 1.34781 * 119.99904 * 299.99509 * 14 2 1 17 17 C 1.46501 * 119.99703 * 0.02562 * 16 14 2 18 18 C 1.46496 * 120.00190 * 180.02562 * 16 14 2 19 19 C 1.50692 * 109.47289 * 90.00232 * 18 16 14 20 20 H 1.08009 * 120.00214 * 359.97438 * 19 18 16 21 21 C 1.37878 * 120.00522 * 180.02562 * 19 18 16 22 22 N 1.31514 * 119.99558 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00583 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46956 * 59.99636 * 23 21 19 25 25 H 1.48493 * 109.47054 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46673 * 299.99724 * 23 21 19 27 27 H 1.08994 * 109.46952 * 59.99345 * 1 2 3 28 28 H 1.09001 * 109.47070 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46687 * 299.99727 * 1 2 3 30 30 H 0.96696 * 114.00315 * 299.37956 * 8 7 5 31 31 H 1.09000 * 109.38811 * 70.84846 * 9 7 5 32 32 H 1.08996 * 109.39110 * 311.14405 * 9 7 5 33 33 H 1.09002 * 109.57593 * 56.78475 * 10 9 7 34 34 H 1.09001 * 109.57569 * 177.04379 * 10 9 7 35 35 H 1.09000 * 109.55632 * 186.96917 * 12 11 10 36 36 H 1.08999 * 109.64457 * 66.68222 * 12 11 10 37 37 H 1.08996 * 109.39045 * 289.14578 * 13 7 5 38 38 H 1.09004 * 109.39255 * 48.85710 * 13 7 5 39 39 H 1.08997 * 109.47278 * 89.99646 * 17 16 14 40 40 H 1.09006 * 109.46958 * 209.99539 * 17 16 14 41 41 H 1.08994 * 109.47178 * 329.99470 * 17 16 14 42 42 H 1.09002 * 109.47049 * 210.00467 * 18 16 14 43 43 H 1.08997 * 109.47082 * 330.00198 * 18 16 14 44 44 H 0.97007 * 119.99978 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2171 0.0641 -2.2812 6 8 1.9974 1.2518 -2.2505 7 6 2.7182 -0.5770 -3.5496 8 8 2.1521 -1.8835 -3.6707 9 6 2.2886 0.2694 -4.7441 10 6 2.5450 -0.4951 -6.0455 11 16 4.3309 -0.7859 -6.2170 12 6 4.7422 -1.5783 -4.6299 13 6 4.2384 -0.6918 -3.4879 14 6 2.0324 -0.7105 1.2304 15 8 2.7296 -1.6966 1.1191 16 7 1.7069 -0.2501 2.4545 17 6 0.8642 0.9408 2.5890 18 6 2.1956 -0.9404 3.6506 19 6 3.5229 -0.3564 4.0605 20 1 3.9591 0.4483 3.4871 21 6 4.1812 -0.8500 5.1670 22 7 3.6504 -1.8301 5.8649 23 14 5.8262 -0.1256 5.6755 24 1 5.6600 1.3199 5.9721 25 1 6.3217 -0.8254 6.8878 26 1 6.8043 -0.2951 4.5710 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 2.3818 -2.4805 -2.9456 31 1 2.8577 1.1990 -4.7523 32 1 1.2260 0.4981 -4.6621 33 1 2.0205 -1.4502 -6.0174 34 1 2.1880 0.0930 -6.8910 35 1 5.8228 -1.6971 -4.5506 36 1 4.2623 -2.5553 -4.5729 37 1 4.6802 0.3005 -3.5782 38 1 4.5298 -1.1307 -2.5336 39 1 -0.1836 0.6425 2.6225 40 1 1.1220 1.4663 3.5086 41 1 1.0274 1.5995 1.7361 42 1 1.4777 -0.8153 4.4612 43 1 2.3171 -2.0016 3.4335 44 1 4.1136 -2.1777 6.6431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769816332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:14 Heat of formation + Delta-G solvation = -186.489216 kcal Electronic energy + Delta-G solvation = -27393.702986 eV Core-core repulsion = 23436.936630 eV Total energy + Delta-G solvation = -3956.766356 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.34198 -40.85601 -39.31329 -37.80837 -36.76137 -34.95850 -34.75572 -33.09541 -32.71797 -29.66613 -28.97591 -27.76383 -26.04898 -24.81003 -24.35039 -23.10981 -21.46124 -20.54128 -19.71611 -18.72136 -18.46213 -18.24168 -17.63770 -17.37438 -17.10977 -16.80242 -16.49150 -15.95177 -15.75574 -15.10216 -14.97469 -14.88183 -14.77342 -14.37181 -14.22797 -14.05313 -13.89357 -13.77726 -13.58594 -13.53037 -13.34072 -13.06546 -12.95114 -12.84056 -12.81250 -12.63647 -12.46376 -12.34140 -12.21789 -12.01656 -11.76027 -11.58528 -11.20791 -10.75945 -10.66682 -10.64814 -9.55157 -8.72418 -8.25750 -6.40540 0.75359 0.80329 1.09239 1.35888 1.39331 1.46615 1.51083 1.57639 2.23077 2.39130 2.92385 3.04420 3.15480 3.31929 3.33824 3.45108 3.68503 3.76428 3.78831 4.05858 4.13239 4.27729 4.32955 4.35746 4.48120 4.56588 4.62824 4.64711 4.69278 4.76600 4.83333 4.84106 4.92343 5.02814 5.06357 5.13070 5.19601 5.47849 5.74885 6.00863 6.24036 6.42104 6.57020 6.67908 7.16438 7.32951 8.81354 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.017120 B = 0.002934 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.090354 B = 9541.204355 C =10483.285418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.079 3.921 3 H 0.113 0.887 4 O -0.337 6.337 5 C 0.440 3.560 6 O -0.514 6.514 7 C 0.158 3.842 8 O -0.539 6.539 9 C -0.096 4.096 10 C -0.063 4.063 11 S -0.293 6.293 12 C -0.062 4.062 13 C -0.149 4.149 14 C 0.501 3.499 15 O -0.576 6.576 16 N -0.599 5.599 17 C 0.067 3.933 18 C 0.261 3.739 19 C -0.549 4.549 20 H 0.052 0.948 21 C 0.011 3.989 22 N -0.925 5.925 23 Si 0.965 3.035 24 H -0.261 1.261 25 H -0.277 1.277 26 H -0.278 1.278 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.112 0.888 30 H 0.401 0.599 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.033 0.967 43 H 0.002 0.998 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.880 5.461 -21.446 22.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.021 3.979 3 H 0.131 0.869 4 O -0.252 6.252 5 C 0.283 3.717 6 O -0.402 6.402 7 C 0.115 3.885 8 O -0.348 6.348 9 C -0.135 4.135 10 C -0.211 4.211 11 S -0.067 6.067 12 C -0.210 4.210 13 C -0.189 4.189 14 C 0.287 3.713 15 O -0.456 6.456 16 N -0.331 5.331 17 C -0.075 4.075 18 C 0.140 3.860 19 C -0.587 4.587 20 H 0.070 0.930 21 C -0.188 4.188 22 N -0.565 5.565 23 Si 0.790 3.210 24 H -0.185 1.185 25 H -0.202 1.202 26 H -0.204 1.204 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.131 0.869 30 H 0.252 0.748 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.051 0.949 43 H 0.020 0.980 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.162 5.677 -22.684 23.946 hybrid contribution 0.379 -0.372 2.421 2.479 sum -4.783 5.305 -20.263 21.485 Atomic orbital electron populations 1.22406 0.89296 1.04612 1.06080 1.22544 0.97834 0.96654 0.80866 0.86902 1.86568 1.76503 1.42315 1.19842 1.25287 0.73869 0.86420 0.86171 1.90642 1.48061 1.17057 1.84419 1.21107 0.93851 0.85037 0.88506 1.86519 1.75319 1.21051 1.51923 1.21655 1.04124 0.97545 0.90167 1.23328 0.93016 1.04717 1.00011 1.87062 1.12450 1.80284 1.26875 1.23345 1.05695 1.00770 0.91176 1.22405 0.92423 1.03256 1.00791 1.20583 0.80723 0.84877 0.85068 1.90660 1.39511 1.28569 1.86835 1.48037 1.50047 1.29535 1.05460 1.22249 0.94768 0.86332 1.04129 1.18843 0.93915 0.91834 0.81435 1.21660 1.06014 1.19352 1.11674 0.92954 1.25817 1.01696 0.95184 0.96147 1.70029 1.40672 1.26980 1.18799 0.85501 0.78892 0.79111 0.77534 1.18507 1.20225 1.20391 0.89644 0.91207 0.86942 0.74754 0.88225 0.89047 0.88369 0.85509 0.86059 0.88023 0.88713 0.89461 0.89573 0.90663 0.89390 0.94899 0.97959 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.75 9.18 71.98 0.66 -3.09 16 2 C 0.08 2.41 2.18 29.85 0.07 2.48 16 3 H 0.11 3.28 6.42 -2.39 -0.02 3.27 16 4 O -0.34 -10.16 8.85 -42.71 -0.38 -10.54 16 5 C 0.44 11.41 6.70 71.24 0.48 11.89 16 6 O -0.51 -14.66 15.47 21.97 0.34 -14.32 16 7 C 0.16 3.10 0.90 -11.82 -0.01 3.09 16 8 O -0.54 -9.92 10.60 -135.56 -1.44 -11.36 16 9 C -0.10 -1.60 4.24 30.49 0.13 -1.47 16 10 C -0.06 -0.91 6.25 72.01 0.45 -0.46 16 11 S -0.29 -5.10 22.36 -56.49 -1.26 -6.36 16 12 C -0.06 -0.97 6.27 72.02 0.45 -0.52 16 13 C -0.15 -2.73 4.81 30.49 0.15 -2.58 16 14 C 0.50 20.75 7.15 87.66 0.63 21.38 16 15 O -0.58 -29.66 16.08 15.76 0.25 -29.40 16 16 N -0.60 -24.55 2.86 -851.16 -2.43 -26.98 16 17 C 0.07 1.86 8.80 127.77 1.12 2.98 16 18 C 0.26 13.65 5.16 85.63 0.44 14.10 16 19 C -0.55 -31.05 9.39 25.60 0.24 -30.81 16 20 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 21 C 0.01 0.63 5.46 84.65 0.46 1.09 16 22 N -0.93 -54.90 13.29 21.45 0.28 -54.61 16 23 Si 0.97 44.15 29.54 68.60 2.03 46.17 16 24 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 25 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 27 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.11 2.08 4.53 -2.39 -0.01 2.07 16 30 H 0.40 6.54 8.62 -74.06 -0.64 5.90 16 31 H 0.10 1.69 8.06 -2.39 -0.02 1.67 16 32 H 0.09 1.49 8.08 -2.39 -0.02 1.47 16 33 H 0.10 1.47 7.36 -2.39 -0.02 1.45 16 34 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.10 1.51 7.36 -2.39 -0.02 1.49 16 37 H 0.09 1.74 8.06 -2.39 -0.02 1.72 16 38 H 0.09 1.75 8.08 -2.39 -0.02 1.74 16 39 H 0.09 1.85 6.95 -2.39 -0.02 1.83 16 40 H 0.07 2.19 8.07 -2.38 -0.02 2.17 16 41 H 0.09 1.94 6.01 -2.39 -0.01 1.93 16 42 H 0.03 1.72 8.07 -2.39 -0.02 1.70 16 43 H 0.00 0.14 7.42 -2.39 -0.02 0.12 16 44 H 0.27 14.95 8.31 -92.70 -0.77 14.18 16 Total: -1.00 -74.55 368.63 3.05 -71.51 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.39 Total: 17.82 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: 5.27 Total: 18.07 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -2.15 Total: -81.59 kcal Atomic # 8 Polarization: -64.40 SS G_CDS: -1.22 Total: -65.62 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -5.10 SS G_CDS: -1.26 Total: -6.36 kcal Total: -74.55 3.05 -71.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769816332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.981 kcal (2) G-P(sol) polarization free energy of solvation -74.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds