Wall clock time and date at job start Tue Mar 31 2020 18:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47256 * 2 1 4 4 O 1.45198 * 109.46990 * 120.00543 * 2 1 3 5 5 C 1.34231 * 116.99587 * 269.99472 * 4 2 1 6 6 O 1.20821 * 120.00078 * 0.02562 * 5 4 2 7 7 C 1.50704 * 119.99941 * 180.02562 * 5 4 2 8 8 O 1.42901 * 109.22086 * 35.60195 * 7 5 4 9 9 C 1.52576 * 109.22683 * 276.24169 * 7 5 4 10 10 C 1.53096 * 109.95652 * 169.00240 * 9 7 5 11 11 S 1.81750 * 108.84116 * 63.02508 * 10 9 7 12 12 C 1.81750 * 102.21781 * 306.73271 * 11 10 9 13 13 C 1.52577 * 109.22475 * 155.00163 * 7 5 4 14 14 C 1.50703 * 109.47055 * 240.00083 * 2 1 3 15 15 O 1.21278 * 120.00313 * 255.41552 * 14 2 1 16 16 N 1.34784 * 119.99984 * 75.69016 * 14 2 1 17 17 C 1.46498 * 119.99788 * 5.07364 * 16 14 2 18 18 C 1.46498 * 120.00222 * 185.07486 * 16 14 2 19 19 C 1.50697 * 109.47170 * 89.99590 * 18 16 14 20 20 H 1.08001 * 119.99875 * 0.02562 * 19 18 16 21 21 C 1.37880 * 120.00022 * 179.97438 * 19 18 16 22 22 N 1.31514 * 120.00195 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99739 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.47027 * 90.00107 * 23 21 19 25 25 H 1.48501 * 109.46799 * 209.99896 * 23 21 19 26 26 H 1.48496 * 109.47352 * 329.99711 * 23 21 19 27 27 H 1.08993 * 109.47267 * 65.10389 * 1 2 3 28 28 H 1.09006 * 109.47138 * 185.09884 * 1 2 3 29 29 H 1.08995 * 109.47093 * 305.09773 * 1 2 3 30 30 H 0.96708 * 113.99938 * 299.99679 * 8 7 5 31 31 H 1.09002 * 109.39142 * 289.15219 * 9 7 5 32 32 H 1.08998 * 109.39201 * 48.85140 * 9 7 5 33 33 H 1.08996 * 109.57716 * 303.21688 * 10 9 7 34 34 H 1.08998 * 109.68391 * 182.89483 * 10 9 7 35 35 H 1.08997 * 109.57634 * 293.45716 * 12 11 10 36 36 H 1.08997 * 109.67978 * 173.13847 * 12 11 10 37 37 H 1.08999 * 109.39153 * 311.14424 * 13 7 5 38 38 H 1.09003 * 109.39184 * 70.85152 * 13 7 5 39 39 H 1.09000 * 109.47256 * 84.89455 * 17 16 14 40 40 H 1.09000 * 109.47024 * 204.89651 * 17 16 14 41 41 H 1.09007 * 109.47204 * 324.89582 * 17 16 14 42 42 H 1.08997 * 109.46894 * 210.00302 * 18 16 14 43 43 H 1.09007 * 109.46680 * 330.00012 * 18 16 14 44 44 H 0.96993 * 120.00244 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 1.1855 5 6 2.2172 0.0639 2.2810 6 8 1.9975 1.2516 2.2506 7 6 2.7194 -0.5772 3.5491 8 8 3.6359 -1.6220 3.2170 9 6 1.5395 -1.1694 4.3141 10 6 2.0479 -2.0551 5.4547 11 16 2.9803 -1.0254 6.6266 12 6 4.1869 -0.2054 5.5427 13 6 3.4377 0.4721 4.3922 14 6 2.0323 -0.7104 -1.2305 15 8 2.4838 -1.8325 -1.1411 16 7 1.9850 -0.0966 -2.4295 17 6 1.5497 1.2992 -2.5212 18 6 2.3687 -0.8253 -3.6411 19 6 1.1565 -1.5053 -4.2235 20 1 0.1962 -1.4043 -3.7398 21 6 1.2732 -2.2554 -5.3746 22 7 0.2153 -2.8484 -5.8831 23 14 2.9342 -2.4293 -6.2116 24 1 3.6427 -3.6140 -5.6641 25 1 2.7361 -2.6025 -7.6731 26 1 3.7439 -1.2096 -5.9630 27 1 -0.3633 0.4326 -0.9321 28 1 -0.3634 -1.0236 0.0913 29 1 -0.3633 0.5909 0.8408 30 1 3.2525 -2.3233 2.6725 31 1 0.9331 -0.3623 4.7254 32 1 0.9313 -1.7671 3.6352 33 1 2.6989 -2.8311 5.0521 34 1 1.2029 -2.5164 5.9659 35 1 4.8797 -0.9453 5.1419 36 1 4.7401 0.5434 6.1095 37 1 4.1477 1.0142 3.7676 38 1 2.7074 1.1720 4.7984 39 1 2.3978 1.9574 -2.3330 40 1 1.1546 1.4918 -3.5186 41 1 0.7726 1.4869 -1.7801 42 1 2.7792 -0.1269 -4.3704 43 1 3.1207 -1.5741 -3.3919 44 1 0.2973 -3.3757 -6.6930 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769816334.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:20 Heat of formation + Delta-G solvation = -163.491918 kcal Electronic energy + Delta-G solvation = -27369.310841 eV Core-core repulsion = 23413.541722 eV Total energy + Delta-G solvation = -3955.769118 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.29589 -39.48391 -38.33965 -36.69290 -35.09860 -34.02771 -32.84403 -32.10070 -31.78754 -28.54105 -28.20396 -26.27869 -24.72165 -23.70057 -23.09965 -21.73060 -20.56905 -19.04573 -18.67510 -17.49229 -17.26999 -17.04539 -16.55828 -16.22682 -15.89726 -15.54369 -15.05514 -14.80342 -14.39259 -14.26122 -14.11605 -13.78585 -13.57148 -13.29384 -13.25311 -12.92312 -12.84630 -12.47743 -12.40173 -12.33154 -12.19792 -12.10611 -11.99453 -11.61372 -11.57033 -11.56337 -11.03168 -10.88795 -10.83977 -10.58602 -10.33356 -10.22743 -10.05263 -9.63240 -9.13475 -8.66533 -8.03205 -7.87655 -6.16625 -4.16607 1.41106 1.80407 2.12221 2.15781 3.04805 3.24331 3.30296 3.32485 3.59798 3.69594 4.01585 4.05589 4.28007 4.32963 4.42708 4.63831 4.75666 4.78042 4.87928 4.94368 4.95904 5.02613 5.16772 5.24030 5.30410 5.38493 5.44653 5.48227 5.55226 5.59849 5.70047 5.70573 5.95515 6.12593 6.18493 6.57048 6.83114 7.05330 7.15090 7.42459 7.50749 8.01297 8.36415 8.70944 8.85593 9.42873 10.96449 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.024640 B = 0.002657 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.104226 B =10536.533703 C =10795.346071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.072 3.928 3 H 0.103 0.897 4 O -0.325 6.325 5 C 0.440 3.560 6 O -0.498 6.498 7 C 0.151 3.849 8 O -0.539 6.539 9 C -0.150 4.150 10 C -0.073 4.073 11 S -0.266 6.266 12 C -0.074 4.074 13 C -0.098 4.098 14 C 0.513 3.487 15 O -0.520 6.520 16 N -0.591 5.591 17 C 0.072 3.928 18 C 0.216 3.784 19 C -0.534 4.534 20 H 0.075 0.925 21 C 0.074 3.926 22 N -0.895 5.895 23 Si 0.876 3.124 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.266 1.266 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.397 0.603 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.034 0.966 43 H 0.040 0.960 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.603 7.725 21.612 23.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.014 3.986 3 H 0.121 0.879 4 O -0.240 6.240 5 C 0.281 3.719 6 O -0.386 6.386 7 C 0.108 3.892 8 O -0.347 6.347 9 C -0.189 4.189 10 C -0.221 4.221 11 S -0.040 6.040 12 C -0.222 4.222 13 C -0.137 4.137 14 C 0.298 3.702 15 O -0.395 6.395 16 N -0.324 5.324 17 C -0.071 4.071 18 C 0.096 3.904 19 C -0.572 4.572 20 H 0.093 0.907 21 C -0.129 4.129 22 N -0.533 5.533 23 Si 0.703 3.297 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.190 1.190 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.247 0.753 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.118 0.882 36 H 0.128 0.872 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.068 0.932 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.991 7.807 22.890 24.512 hybrid contribution 0.323 -0.411 -2.409 2.466 sum 4.314 7.396 20.481 22.198 Atomic orbital electron populations 1.22182 0.91720 1.04383 1.04023 1.22681 0.96237 0.97307 0.82389 0.87877 1.86570 1.76072 1.41691 1.19640 1.24631 0.74566 0.86507 0.86152 1.90657 1.47639 1.16320 1.83948 1.21031 0.90653 0.89215 0.88319 1.86551 1.38945 1.35107 1.74085 1.22413 0.97090 1.01262 0.98137 1.23315 1.02493 0.99322 0.96949 1.86888 1.42277 1.56457 1.18375 1.23346 0.98726 1.02656 0.97459 1.21642 1.00611 0.95662 0.95827 1.19735 0.80059 0.86695 0.83749 1.90690 1.44886 1.18553 1.85378 1.47745 1.65196 1.12379 1.07097 1.21882 0.99053 0.82207 1.03998 1.19754 0.97284 0.92425 0.80960 1.21298 0.95190 1.30997 1.09724 0.90667 1.24847 0.96625 0.94703 0.96712 1.69885 1.29064 1.32639 1.21743 0.86849 0.84536 0.79426 0.78892 1.19798 1.20972 1.19030 0.89171 0.90448 0.91216 0.75264 0.88651 0.88995 0.88473 0.87082 0.88204 0.87249 0.89302 0.88186 0.93248 0.89776 0.91920 0.94803 0.94251 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 9.20 37.16 0.34 -1.89 16 2 C 0.07 1.12 2.14 -27.88 -0.06 1.06 16 3 H 0.10 1.48 6.34 -51.93 -0.33 1.15 16 4 O -0.32 -4.84 8.88 -48.27 -0.43 -5.27 16 5 C 0.44 5.66 6.70 36.01 0.24 5.90 16 6 O -0.50 -7.11 15.47 -18.75 -0.29 -7.40 16 7 C 0.15 1.48 0.91 -92.20 -0.08 1.40 16 8 O -0.54 -5.44 10.60 -49.23 -0.52 -5.96 16 9 C -0.15 -1.18 4.81 -26.90 -0.13 -1.31 16 10 C -0.07 -0.53 6.26 37.21 0.23 -0.30 16 11 S -0.27 -2.33 22.33 -107.50 -2.40 -4.73 16 12 C -0.07 -0.59 6.26 37.21 0.23 -0.36 16 13 C -0.10 -0.88 4.24 -26.90 -0.11 -1.00 16 14 C 0.51 10.36 6.96 -10.98 -0.08 10.29 16 15 O -0.52 -12.58 16.13 -13.58 -0.22 -12.79 16 16 N -0.59 -11.85 2.86 -182.95 -0.52 -12.38 16 17 C 0.07 1.07 9.80 59.85 0.59 1.65 16 18 C 0.22 5.14 4.25 -5.20 -0.02 5.12 16 19 C -0.53 -14.87 9.94 -34.44 -0.34 -15.21 16 20 H 0.08 2.28 8.06 -52.49 -0.42 1.85 16 21 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 22 N -0.90 -26.99 13.96 55.43 0.77 -26.21 16 23 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 27 H 0.09 1.19 6.24 -51.93 -0.32 0.86 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.40 3.48 8.61 45.56 0.39 3.87 16 31 H 0.09 0.74 8.06 -51.93 -0.42 0.32 16 32 H 0.09 0.68 8.08 -51.93 -0.42 0.26 16 33 H 0.10 0.71 7.35 -51.93 -0.38 0.32 16 34 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.86 7.35 -51.93 -0.38 0.48 16 36 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 38 H 0.10 0.86 8.06 -51.93 -0.42 0.44 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.08 1.25 8.03 -51.93 -0.42 0.84 16 41 H 0.06 0.78 4.86 -51.92 -0.25 0.53 16 42 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 43 H 0.04 1.01 6.78 -51.92 -0.35 0.65 16 44 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 367.44 15.07 5.54 5.54 Total: -1.00 -34.43 367.44 -7.83 -42.25 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.80 Total: 3.15 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 0.71 Total: 7.37 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.25 Total: -38.59 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -1.46 Total: -31.42 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Atomic # 16 Polarization: -2.33 SS G_CDS: -2.40 Total: -4.73 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.43 -7.83 -42.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769816334.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.239 kcal (2) G-P(sol) polarization free energy of solvation -34.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds