Wall clock time and date at job start Tue Mar 31 2020 18:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47256 * 2 1 4 4 O 1.45198 * 109.46990 * 120.00543 * 2 1 3 5 5 C 1.34231 * 116.99587 * 269.99472 * 4 2 1 6 6 O 1.20821 * 120.00078 * 0.02562 * 5 4 2 7 7 C 1.50704 * 119.99941 * 180.02562 * 5 4 2 8 8 O 1.42901 * 109.22086 * 35.60195 * 7 5 4 9 9 C 1.52576 * 109.22683 * 276.24169 * 7 5 4 10 10 C 1.53096 * 109.95652 * 169.00240 * 9 7 5 11 11 S 1.81750 * 108.84116 * 63.02508 * 10 9 7 12 12 C 1.81750 * 102.21781 * 306.73271 * 11 10 9 13 13 C 1.52577 * 109.22475 * 155.00163 * 7 5 4 14 14 C 1.50703 * 109.47055 * 240.00083 * 2 1 3 15 15 O 1.21278 * 120.00313 * 255.41552 * 14 2 1 16 16 N 1.34784 * 119.99984 * 75.69016 * 14 2 1 17 17 C 1.46498 * 119.99788 * 5.07364 * 16 14 2 18 18 C 1.46498 * 120.00222 * 185.07486 * 16 14 2 19 19 C 1.50697 * 109.47170 * 89.99590 * 18 16 14 20 20 H 1.08001 * 119.99875 * 0.02562 * 19 18 16 21 21 C 1.37880 * 120.00022 * 179.97438 * 19 18 16 22 22 N 1.31514 * 120.00195 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99739 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.47027 * 90.00107 * 23 21 19 25 25 H 1.48501 * 109.46799 * 209.99896 * 23 21 19 26 26 H 1.48496 * 109.47352 * 329.99711 * 23 21 19 27 27 H 1.08993 * 109.47267 * 65.10389 * 1 2 3 28 28 H 1.09006 * 109.47138 * 185.09884 * 1 2 3 29 29 H 1.08995 * 109.47093 * 305.09773 * 1 2 3 30 30 H 0.96708 * 113.99938 * 299.99679 * 8 7 5 31 31 H 1.09002 * 109.39142 * 289.15219 * 9 7 5 32 32 H 1.08998 * 109.39201 * 48.85140 * 9 7 5 33 33 H 1.08996 * 109.57716 * 303.21688 * 10 9 7 34 34 H 1.08998 * 109.68391 * 182.89483 * 10 9 7 35 35 H 1.08997 * 109.57634 * 293.45716 * 12 11 10 36 36 H 1.08997 * 109.67978 * 173.13847 * 12 11 10 37 37 H 1.08999 * 109.39153 * 311.14424 * 13 7 5 38 38 H 1.09003 * 109.39184 * 70.85152 * 13 7 5 39 39 H 1.09000 * 109.47256 * 84.89455 * 17 16 14 40 40 H 1.09000 * 109.47024 * 204.89651 * 17 16 14 41 41 H 1.09007 * 109.47204 * 324.89582 * 17 16 14 42 42 H 1.08997 * 109.46894 * 210.00302 * 18 16 14 43 43 H 1.09007 * 109.46680 * 330.00012 * 18 16 14 44 44 H 0.96993 * 120.00244 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 1.1855 5 6 2.2172 0.0639 2.2810 6 8 1.9975 1.2516 2.2506 7 6 2.7194 -0.5772 3.5491 8 8 3.6359 -1.6220 3.2170 9 6 1.5395 -1.1694 4.3141 10 6 2.0479 -2.0551 5.4547 11 16 2.9803 -1.0254 6.6266 12 6 4.1869 -0.2054 5.5427 13 6 3.4377 0.4721 4.3922 14 6 2.0323 -0.7104 -1.2305 15 8 2.4838 -1.8325 -1.1411 16 7 1.9850 -0.0966 -2.4295 17 6 1.5497 1.2992 -2.5212 18 6 2.3687 -0.8253 -3.6411 19 6 1.1565 -1.5053 -4.2235 20 1 0.1962 -1.4043 -3.7398 21 6 1.2732 -2.2554 -5.3746 22 7 0.2153 -2.8484 -5.8831 23 14 2.9342 -2.4293 -6.2116 24 1 3.6427 -3.6140 -5.6641 25 1 2.7361 -2.6025 -7.6731 26 1 3.7439 -1.2096 -5.9630 27 1 -0.3633 0.4326 -0.9321 28 1 -0.3634 -1.0236 0.0913 29 1 -0.3633 0.5909 0.8408 30 1 3.2525 -2.3233 2.6725 31 1 0.9331 -0.3623 4.7254 32 1 0.9313 -1.7671 3.6352 33 1 2.6989 -2.8311 5.0521 34 1 1.2029 -2.5164 5.9659 35 1 4.8797 -0.9453 5.1419 36 1 4.7401 0.5434 6.1095 37 1 4.1477 1.0142 3.7676 38 1 2.7074 1.1720 4.7984 39 1 2.3978 1.9574 -2.3330 40 1 1.1546 1.4918 -3.5186 41 1 0.7726 1.4869 -1.7801 42 1 2.7792 -0.1269 -4.3704 43 1 3.1207 -1.5741 -3.3919 44 1 0.2973 -3.3757 -6.6930 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769816334.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:19 Heat of formation + Delta-G solvation = -186.579708 kcal Electronic energy + Delta-G solvation = -27370.312002 eV Core-core repulsion = 23413.541722 eV Total energy + Delta-G solvation = -3956.770280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.34536 -40.87789 -39.32128 -37.82468 -36.76484 -34.85122 -34.74842 -33.21931 -32.71699 -30.32501 -29.02261 -27.65999 -26.06090 -24.60988 -24.29547 -23.03851 -21.42708 -20.47278 -19.73243 -19.16145 -18.48328 -18.22099 -17.70879 -17.39143 -17.15209 -16.72252 -16.34807 -16.10987 -15.80169 -15.15752 -14.89760 -14.83977 -14.77922 -14.49293 -14.38398 -14.00172 -13.84131 -13.76975 -13.70115 -13.57830 -13.45985 -13.24284 -12.99385 -12.85959 -12.81328 -12.65965 -12.47485 -12.31495 -12.06601 -12.03770 -11.76014 -11.58669 -11.19067 -10.84744 -10.74917 -10.70241 -9.53759 -8.70817 -8.35545 -6.41217 0.77986 0.80014 1.05619 1.33339 1.36844 1.44777 1.50062 1.53154 2.22117 2.29908 2.94624 2.98779 3.15112 3.29812 3.34569 3.46000 3.67480 3.75213 3.78757 4.06612 4.16847 4.22197 4.33134 4.37252 4.46169 4.50851 4.57326 4.65942 4.69772 4.73763 4.77416 4.81504 4.87377 4.88702 5.02273 5.03926 5.12884 5.40956 5.48285 6.18489 6.25226 6.41522 6.50697 6.60402 7.10070 7.25593 8.80890 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.024640 B = 0.002657 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.104226 B =10536.533703 C =10795.346071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.081 3.919 3 H 0.122 0.878 4 O -0.337 6.337 5 C 0.441 3.559 6 O -0.511 6.511 7 C 0.154 3.846 8 O -0.544 6.544 9 C -0.145 4.145 10 C -0.065 4.065 11 S -0.290 6.290 12 C -0.065 4.065 13 C -0.097 4.097 14 C 0.503 3.497 15 O -0.571 6.571 16 N -0.598 5.598 17 C 0.064 3.936 18 C 0.222 3.778 19 C -0.538 4.538 20 H 0.035 0.965 21 C 0.014 3.986 22 N -0.942 5.942 23 Si 0.944 3.056 24 H -0.277 1.277 25 H -0.275 1.275 26 H -0.238 1.238 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.401 0.599 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.127 0.873 35 H 0.093 0.907 36 H 0.125 0.875 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.056 0.944 43 H 0.021 0.979 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.566 9.274 22.568 24.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.023 3.977 3 H 0.139 0.861 4 O -0.253 6.253 5 C 0.283 3.717 6 O -0.399 6.399 7 C 0.111 3.889 8 O -0.353 6.353 9 C -0.184 4.184 10 C -0.213 4.213 11 S -0.064 6.064 12 C -0.213 4.213 13 C -0.136 4.136 14 C 0.290 3.710 15 O -0.451 6.451 16 N -0.330 5.330 17 C -0.077 4.077 18 C 0.100 3.900 19 C -0.576 4.576 20 H 0.053 0.947 21 C -0.184 4.184 22 N -0.582 5.582 23 Si 0.767 3.233 24 H -0.202 1.202 25 H -0.201 1.201 26 H -0.161 1.161 27 H 0.111 0.889 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.253 0.747 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.145 0.855 35 H 0.111 0.889 36 H 0.143 0.857 37 H 0.102 0.898 38 H 0.123 0.877 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.074 0.926 43 H 0.039 0.961 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.942 9.413 23.866 26.127 hybrid contribution -0.046 -0.883 -2.648 2.792 sum 4.896 8.531 21.218 23.387 Atomic orbital electron populations 1.22174 0.90115 1.04162 1.05293 1.22535 0.97176 0.97102 0.80868 0.86073 1.86592 1.76384 1.42360 1.19924 1.25286 0.73876 0.86403 0.86143 1.90643 1.48327 1.16862 1.84082 1.21186 0.91387 0.89322 0.86992 1.86548 1.39372 1.35274 1.74154 1.22394 0.96303 1.01531 0.98147 1.23343 1.02800 0.98824 0.96344 1.86987 1.42877 1.56992 1.19542 1.23311 0.98267 1.02704 0.97021 1.21668 1.00640 0.95482 0.95853 1.20576 0.79006 0.86322 0.85071 1.90652 1.47143 1.20891 1.86364 1.47827 1.64907 1.14150 1.06081 1.22207 1.01115 0.79583 1.04843 1.19452 0.94979 0.92705 0.82817 1.21517 0.95115 1.31386 1.09629 0.94691 1.25795 1.00781 0.94253 0.97577 1.70029 1.31694 1.33889 1.22609 0.85768 0.79537 0.80204 0.77790 1.20225 1.20059 1.16105 0.88889 0.91741 0.88597 0.74742 0.88138 0.88405 0.88418 0.85507 0.88867 0.85722 0.89829 0.87706 0.90112 0.90002 0.89495 0.92592 0.96052 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 9.20 71.98 0.66 -3.42 16 2 C 0.08 2.43 2.14 29.85 0.06 2.49 16 3 H 0.12 3.18 6.34 -2.39 -0.02 3.16 16 4 O -0.34 -9.73 8.88 -42.81 -0.38 -10.11 16 5 C 0.44 10.65 6.70 71.24 0.48 11.12 16 6 O -0.51 -13.54 15.47 21.98 0.34 -13.20 16 7 C 0.15 2.81 0.91 -11.82 -0.01 2.80 16 8 O -0.54 -10.47 10.60 -135.60 -1.44 -11.90 16 9 C -0.14 -2.02 4.81 30.49 0.15 -1.87 16 10 C -0.07 -0.84 6.26 72.01 0.45 -0.38 16 11 S -0.29 -4.63 22.33 -56.49 -1.26 -5.89 16 12 C -0.07 -0.94 6.26 72.02 0.45 -0.49 16 13 C -0.10 -1.59 4.24 30.49 0.13 -1.46 16 14 C 0.50 20.27 6.96 87.66 0.61 20.88 16 15 O -0.57 -28.28 16.13 15.28 0.25 -28.04 16 16 N -0.60 -23.53 2.86 -851.12 -2.43 -25.96 16 17 C 0.06 1.75 9.80 127.77 1.25 3.00 16 18 C 0.22 10.51 4.25 85.63 0.36 10.87 16 19 C -0.54 -30.59 9.94 25.60 0.25 -30.34 16 20 H 0.03 2.20 8.06 -2.91 -0.02 2.18 16 21 C 0.01 0.83 5.47 84.66 0.46 1.29 16 22 N -0.94 -58.19 13.96 21.45 0.30 -57.89 16 23 Si 0.94 43.34 27.47 68.60 1.88 45.23 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 25 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 26 H -0.24 -9.77 6.54 99.48 0.65 -9.12 16 27 H 0.09 2.30 6.24 -2.39 -0.01 2.29 16 28 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 29 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.40 6.83 8.61 -74.05 -0.64 6.19 16 31 H 0.10 1.33 8.06 -2.39 -0.02 1.31 16 32 H 0.10 1.28 8.08 -2.39 -0.02 1.26 16 33 H 0.10 1.27 7.35 -2.39 -0.02 1.25 16 34 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.09 1.49 7.35 -2.39 -0.02 1.48 16 36 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.08 1.46 8.08 -2.39 -0.02 1.44 16 38 H 0.10 1.62 8.06 -2.39 -0.02 1.60 16 39 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.08 2.29 8.03 -2.39 -0.02 2.27 16 41 H 0.09 1.94 4.86 -2.38 -0.01 1.93 16 42 H 0.06 2.40 7.13 -2.39 -0.02 2.38 16 43 H 0.02 1.09 6.78 -2.38 -0.02 1.08 16 44 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -76.33 367.44 2.90 -73.43 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.33 Total: 19.85 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 5.31 Total: 14.49 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -2.13 Total: -83.85 kcal Atomic # 8 Polarization: -62.02 SS G_CDS: -1.23 Total: -63.25 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.23 kcal Atomic # 16 Polarization: -4.63 SS G_CDS: -1.26 Total: -5.89 kcal Total: -76.33 2.90 -73.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769816334.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.150 kcal (2) G-P(sol) polarization free energy of solvation -76.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds