Wall clock time and date at job start Tue Mar 31 2020 15:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37890 * 119.67404 * 2 1 4 4 C 1.38929 * 119.97270 * 179.97438 * 3 2 1 5 5 O 1.34911 * 133.10266 * 179.97438 * 4 3 2 6 6 C 1.33768 * 111.36984 * 180.02562 * 5 4 3 7 7 C 1.36142 * 109.84597 * 0.02562 * 6 5 4 8 8 C 1.46923 * 127.15044 * 180.02562 * 7 6 5 9 9 O 1.21566 * 119.99888 * 179.97438 * 8 7 6 10 10 O 1.34813 * 119.99773 * 359.97438 * 8 7 6 11 11 C 1.45200 * 116.99861 * 179.97438 * 10 8 7 12 12 C 1.50705 * 109.47201 * 179.97438 * 11 10 8 13 13 O 1.21280 * 119.99934 * 0.02562 * 12 11 10 14 14 N 1.34770 * 119.99962 * 179.97438 * 12 11 10 15 15 C 1.46510 * 119.99828 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47013 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99751 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99994 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99965 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00023 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47157 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47288 * 120.00097 * 20 18 16 23 23 H 1.48504 * 109.46936 * 239.99644 * 20 18 16 24 24 C 1.40257 * 119.25740 * 0.02562 * 4 3 2 25 25 C 1.39059 * 120.28976 * 359.72168 * 24 4 3 26 26 C 1.37888 * 119.62713 * 0.53271 * 25 24 4 27 27 C 1.50703 * 119.89909 * 179.77105 * 26 25 24 28 28 H 1.09000 * 109.47301 * 270.02354 * 1 2 3 29 29 H 1.09004 * 109.47002 * 30.02717 * 1 2 3 30 30 H 1.09004 * 109.47206 * 150.02212 * 1 2 3 31 31 H 1.07991 * 120.01207 * 359.97438 * 3 2 1 32 32 H 1.08001 * 125.07915 * 180.02562 * 6 5 4 33 33 H 1.08994 * 109.47399 * 299.99401 * 11 10 8 34 34 H 1.09006 * 109.47069 * 59.99652 * 11 10 8 35 35 H 0.96998 * 120.00228 * 0.02562 * 14 12 11 36 36 H 1.09002 * 109.46796 * 299.99418 * 15 14 12 37 37 H 1.08997 * 109.47388 * 59.99826 * 15 14 12 38 38 H 0.96998 * 120.00019 * 180.02562 * 19 18 16 39 39 H 1.07994 * 120.18489 * 180.27618 * 25 24 4 40 40 H 1.09002 * 109.47152 * 269.71955 * 27 26 25 41 41 H 1.09001 * 109.46980 * 149.72055 * 27 26 25 42 42 H 1.09004 * 109.47113 * 29.72036 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1896 1.1981 0.0000 4 6 3.5789 1.2053 0.0005 5 8 4.4956 2.1951 0.0002 6 6 5.7407 1.7063 0.0005 7 6 5.7030 0.3454 0.0004 8 6 6.8490 -0.5740 0.0011 9 8 6.6643 -1.7755 0.0014 10 8 8.1054 -0.0851 0.0015 11 6 9.1888 -1.0517 0.0028 12 6 10.5096 -0.3259 0.0024 13 8 10.5352 0.8866 0.0016 14 7 11.6623 -1.0243 0.0039 15 6 12.9462 -0.3186 0.0041 16 6 14.0707 -1.3219 0.0053 17 1 13.8510 -2.3793 0.0063 18 6 15.3800 -0.8899 0.0051 19 7 15.6476 0.3978 0.0034 20 14 16.7740 -2.1335 0.0074 21 1 16.2113 -3.5077 0.0098 22 1 17.6098 -1.9424 -1.2051 23 1 17.6090 -1.9388 1.2199 24 6 4.2707 -0.0148 0.0005 25 6 3.5722 -1.2172 0.0058 26 6 2.1934 -1.2045 -0.0001 27 6 1.4302 -2.5040 0.0004 28 1 -0.3634 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5143 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6445 2.1303 -0.0004 32 1 6.6415 2.3022 0.0007 33 1 9.1175 -1.6763 0.8932 34 1 9.1183 -1.6777 -0.8868 35 1 11.6418 -1.9940 0.0049 36 1 13.0178 0.3056 -0.8866 37 1 13.0166 0.3076 0.8934 38 1 16.5687 0.7018 0.0029 39 1 4.1066 -2.1556 0.0103 40 1 1.2462 -2.8177 -1.0272 41 1 0.4788 -2.3664 0.5142 42 1 2.0136 -3.2679 0.5146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770490330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:41 Heat of formation + Delta-G solvation = -124.208719 kcal Electronic energy + Delta-G solvation = -26349.422646 eV Core-core repulsion = 22259.913024 eV Total energy + Delta-G solvation = -4089.509622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.77010 -41.57644 -40.32453 -39.71820 -37.55998 -36.19189 -34.60292 -34.42198 -33.25637 -32.39356 -30.76776 -28.65065 -28.07134 -27.41487 -25.43571 -24.39400 -23.55696 -22.09399 -21.66666 -21.51975 -19.40986 -19.01912 -18.44563 -17.95481 -17.75909 -17.47871 -17.33019 -16.95612 -16.66257 -16.15097 -16.14875 -15.73644 -15.41138 -15.00888 -14.91393 -14.64232 -14.53373 -14.11919 -13.91357 -13.69320 -13.59445 -13.58411 -13.25182 -13.01377 -12.92129 -12.76315 -12.51786 -12.34295 -12.23239 -12.08402 -11.97743 -11.83454 -11.47533 -11.25657 -10.93829 -10.83677 -9.94142 -9.49177 -9.29523 -8.30408 -6.46772 -0.43766 0.12968 0.45455 1.06500 1.44320 1.44556 1.52772 1.52846 1.58437 1.75973 2.32574 2.53953 2.54961 3.05105 3.22823 3.39126 3.64549 3.68619 3.84619 3.95287 4.02872 4.04827 4.13287 4.17380 4.26832 4.65815 4.68811 4.72850 4.82585 4.88571 4.99600 5.02646 5.08938 5.13063 5.15621 5.21620 5.22586 5.31414 5.40832 5.49989 5.61066 5.62224 5.81524 5.95652 6.48257 6.62342 6.76234 7.19333 7.33943 8.81843 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.033740 B = 0.001823 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.688338 B =15355.184960 C =16153.820994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.060 4.060 3 C -0.100 4.100 4 C 0.025 3.975 5 O -0.178 6.178 6 C 0.133 3.867 7 C -0.261 4.261 8 C 0.543 3.457 9 O -0.525 6.525 10 O -0.340 6.340 11 C 0.062 3.938 12 C 0.502 3.498 13 O -0.581 6.581 14 N -0.698 5.698 15 C 0.266 3.734 16 C -0.557 4.557 17 H 0.086 0.914 18 C 0.005 3.995 19 N -0.929 5.929 20 Si 0.985 3.015 21 H -0.254 1.254 22 H -0.279 1.279 23 H -0.279 1.279 24 C -0.113 4.113 25 C -0.089 4.089 26 C -0.092 4.092 27 C -0.114 4.114 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.161 0.839 32 H 0.255 0.745 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.412 0.588 36 H -0.006 1.006 37 H -0.006 1.006 38 H 0.269 0.731 39 H 0.125 0.875 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.000 -3.498 0.001 33.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.061 4.061 3 C -0.118 4.118 4 C -0.021 4.021 5 O -0.077 6.077 6 C 0.064 3.936 7 C -0.264 4.264 8 C 0.390 3.610 9 O -0.416 6.416 10 O -0.256 6.256 11 C -0.014 4.014 12 C 0.287 3.713 13 O -0.462 6.462 14 N -0.350 5.350 15 C 0.144 3.856 16 C -0.595 4.595 17 H 0.104 0.896 18 C -0.195 4.195 19 N -0.568 5.568 20 Si 0.808 3.192 21 H -0.177 1.177 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.114 4.114 25 C -0.107 4.107 26 C -0.092 4.092 27 C -0.170 4.170 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.178 0.822 32 H 0.271 0.729 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.249 0.751 36 H 0.012 0.988 37 H 0.012 0.988 38 H 0.078 0.922 39 H 0.143 0.857 40 H 0.101 0.899 41 H 0.111 0.889 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -32.958 -2.608 0.001 33.061 hybrid contribution 1.753 -0.727 0.000 1.898 sum -31.205 -3.336 0.001 31.383 Atomic orbital electron populations 1.20939 0.87354 1.04655 1.03964 1.19961 0.98103 0.90439 0.97557 1.20168 0.87162 1.00530 1.03966 1.19818 0.91953 0.84309 1.05994 1.83901 1.14446 1.35170 1.74188 1.25375 0.86573 0.92928 0.88724 1.19951 0.90703 0.93740 1.21959 1.20024 0.81964 0.86792 0.72187 1.90812 1.86299 1.16838 1.47701 1.86569 1.14544 1.40249 1.84259 1.22774 0.81508 0.89867 1.07289 1.20584 0.86048 0.87785 0.76835 1.90676 1.88186 1.15820 1.51471 1.46037 1.05336 1.11121 1.72464 1.18649 0.79617 0.92658 0.94713 1.21649 0.90954 0.93931 1.52957 0.89621 1.26035 1.02045 0.97551 0.93848 1.70133 1.20880 1.15876 1.49897 0.85110 0.77642 0.78810 0.77641 1.17706 1.20505 1.20515 1.19488 0.90196 0.95431 1.06269 1.20589 0.94036 0.96302 0.99781 1.20089 0.92293 0.97070 0.99757 1.20898 1.00390 0.92158 1.03542 0.89363 0.89830 0.89544 0.82174 0.72916 0.85731 0.85741 0.75119 0.98821 0.98813 0.92205 0.85719 0.89860 0.88917 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 9.17 71.23 0.65 0.00 16 2 C -0.06 -0.82 5.88 -19.85 -0.12 -0.94 16 3 C -0.10 -1.58 9.69 22.35 0.22 -1.36 16 4 C 0.02 0.54 7.39 22.93 0.17 0.71 16 5 O -0.18 -3.73 10.52 -3.50 -0.04 -3.77 16 6 C 0.13 2.76 11.82 67.33 0.80 3.55 16 7 C -0.26 -6.86 6.30 -18.99 -0.12 -6.98 16 8 C 0.54 16.19 7.94 70.10 0.56 16.75 16 9 O -0.53 -17.08 16.08 19.62 0.32 -16.76 16 10 O -0.34 -10.64 9.60 -50.86 -0.49 -11.12 16 11 C 0.06 1.82 5.96 71.24 0.42 2.24 16 12 C 0.50 19.88 7.91 87.66 0.69 20.57 16 13 O -0.58 -28.54 16.50 15.77 0.26 -28.28 16 14 N -0.70 -28.59 5.55 -466.77 -2.59 -31.18 16 15 C 0.27 14.25 5.43 85.63 0.46 14.71 16 16 C -0.56 -29.69 9.28 25.60 0.24 -29.46 16 17 H 0.09 4.11 7.60 -2.91 -0.02 4.09 16 18 C 0.01 0.27 5.46 84.65 0.46 0.74 16 19 N -0.93 -55.24 13.29 21.45 0.28 -54.96 16 20 Si 0.98 41.81 29.54 68.60 2.03 43.84 16 21 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 22 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 24 C -0.11 -2.85 6.29 -20.09 -0.13 -2.98 16 25 C -0.09 -2.03 9.53 22.38 0.21 -1.82 16 26 C -0.09 -1.51 5.88 -19.85 -0.12 -1.63 16 27 C -0.11 -1.15 9.18 71.24 0.65 -0.50 16 28 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.08 0.30 8.08 -2.38 -0.02 0.28 16 30 H 0.09 0.32 6.67 -2.38 -0.02 0.31 16 31 H 0.16 1.61 8.06 -2.92 -0.02 1.59 16 32 H 0.26 3.80 8.06 -2.91 -0.02 3.77 16 33 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 34 H 0.12 3.04 8.14 -2.38 -0.02 3.02 16 35 H 0.41 13.63 8.32 -92.71 -0.77 12.86 16 36 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 37 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 38 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 39 H 0.12 3.05 7.54 -2.91 -0.02 3.03 16 40 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.09 0.54 6.67 -2.39 -0.02 0.52 16 42 H 0.07 0.73 8.08 -2.38 -0.02 0.71 16 Total: -1.00 -77.40 371.70 5.13 -72.27 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.30 Total: 16.35 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 5.06 Total: 13.62 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -2.30 Total: -86.14 kcal Atomic # 8 Polarization: -59.99 SS G_CDS: 0.05 Total: -59.94 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -77.40 5.13 -72.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770490330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.938 kcal (2) G-P(sol) polarization free energy of solvation -77.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds