Wall clock time and date at job start Tue Mar 31 2020 17:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46986 * 2 1 4 4 C 1.50699 * 109.47480 * 239.99999 * 2 1 3 5 5 H 1.07996 * 120.00569 * 240.00013 * 4 2 1 6 6 C 1.37885 * 119.99640 * 59.99735 * 4 2 1 7 7 N 1.31516 * 120.00124 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99710 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47476 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46894 * 120.00180 * 8 6 4 11 11 H 1.48501 * 109.47096 * 239.99830 * 8 6 4 12 12 O 1.45206 * 109.47098 * 119.99952 * 2 1 3 13 13 C 1.34227 * 116.99672 * 269.99987 * 12 2 1 14 14 O 1.20821 * 120.00682 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99328 * 180.02562 * 13 12 2 16 16 C 1.52999 * 109.46817 * 205.27129 * 15 13 12 17 17 C 1.52995 * 109.46870 * 85.27455 * 15 13 12 18 18 N 1.46499 * 109.46973 * 325.27142 * 15 13 12 19 19 C 1.34523 * 124.46017 * 121.71320 * 18 15 13 20 20 O 1.21456 * 125.70684 * 0.02962 * 19 18 15 21 21 C 1.47810 * 108.57997 * 180.02562 * 19 18 15 22 22 C 1.38575 * 134.29117 * 180.02562 * 21 19 18 23 23 C 1.38613 * 119.71406 * 180.21104 * 22 21 19 24 24 C 1.38230 * 120.45708 * 359.51505 * 23 22 21 25 25 C 1.38607 * 120.46528 * 0.47782 * 24 23 22 26 26 C 1.38574 * 119.71774 * 359.77188 * 25 24 23 27 27 C 1.34522 * 124.45974 * 301.72558 * 18 15 13 28 28 O 1.21447 * 125.71369 * 0.02562 * 27 18 15 29 29 H 1.08997 * 109.47261 * 60.00394 * 1 2 3 30 30 H 1.09005 * 109.46986 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47506 * 299.99633 * 1 2 3 32 32 H 0.97004 * 119.99786 * 179.97438 * 7 6 4 33 33 H 1.08993 * 109.47330 * 180.02562 * 16 15 13 34 34 H 1.08999 * 109.47386 * 300.00641 * 16 15 13 35 35 H 1.09007 * 109.47128 * 59.99832 * 16 15 13 36 36 H 1.08992 * 109.47312 * 299.99310 * 17 15 13 37 37 H 1.09000 * 109.47585 * 59.99812 * 17 15 13 38 38 H 1.09006 * 109.46733 * 179.97438 * 17 15 13 39 39 H 1.07993 * 120.13739 * 359.94062 * 22 21 19 40 40 H 1.08001 * 119.76848 * 179.73095 * 23 22 21 41 41 H 1.08002 * 119.76281 * 180.24302 * 24 23 22 42 42 H 1.08002 * 120.14291 * 179.74514 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 3.1466 -2.2869 -3.6038 10 1 1.1661 -1.5866 -4.8161 11 1 3.1466 -0.1872 -4.8165 12 8 2.0140 -0.6845 1.1856 13 6 2.2171 0.0640 2.2811 14 8 1.9973 1.2517 2.2507 15 6 2.7193 -0.5771 3.5492 16 6 2.2857 0.2634 4.7519 17 6 4.2465 -0.6596 3.5087 18 7 2.1603 -1.9259 3.6689 19 6 2.8951 -3.0486 3.7651 20 8 4.1084 -3.1038 3.7670 21 6 1.9787 -4.2038 3.8683 22 6 2.1571 -5.5728 3.9879 23 6 1.0517 -6.4061 4.0589 24 6 -0.2260 -5.8800 4.0212 25 6 -0.4197 -4.5127 3.9021 26 6 0.6759 -3.6678 3.8250 27 6 0.8446 -2.2049 3.6970 28 8 -0.0542 -1.3911 3.6276 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8899 32 1 0.7095 1.1619 -3.4844 33 1 2.6493 -0.2000 5.6690 34 1 2.7015 1.2670 4.6627 35 1 1.1976 0.3223 4.7807 36 1 4.5554 -1.2584 2.6519 37 1 4.6624 0.3440 3.4195 38 1 4.6098 -1.1229 4.4260 39 1 3.1531 -5.9890 4.0212 40 1 1.1897 -7.4736 4.1477 41 1 -1.0793 -6.5393 4.0813 42 1 -1.4203 -4.1075 3.8691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770874917.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:56 Heat of formation + Delta-G solvation = -95.096137 kcal Electronic energy + Delta-G solvation = -29506.651813 eV Core-core repulsion = 25418.404607 eV Total energy + Delta-G solvation = -4088.247206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.55928 -39.82356 -38.69835 -38.50805 -36.28929 -35.72896 -34.26014 -33.24372 -31.36194 -30.49191 -29.58562 -27.48446 -25.36475 -25.16305 -24.89318 -23.65285 -22.05223 -21.16522 -20.38531 -19.16224 -17.92161 -17.61294 -16.94406 -16.74894 -16.44092 -15.84995 -15.36831 -15.21131 -15.12579 -14.67128 -14.51195 -14.29644 -14.22669 -13.89734 -13.30967 -13.09754 -12.98816 -12.81169 -12.58358 -12.28812 -12.21111 -12.03836 -11.79001 -11.71143 -11.56081 -11.21387 -11.08079 -10.82668 -10.46857 -10.36514 -10.34738 -10.26539 -9.96319 -9.57782 -9.50313 -9.44236 -9.29262 -8.90507 -8.50005 -6.18676 -4.25688 -0.05345 0.75224 1.92592 2.08128 2.89512 2.92236 3.22946 3.28650 3.32952 3.39004 3.43531 3.60828 4.21701 4.31549 4.40162 4.60868 4.66465 4.71343 4.83009 4.98889 5.11767 5.14114 5.16221 5.44808 5.52754 5.53921 5.67480 5.71751 5.75599 5.83065 5.93232 5.95378 6.07562 6.19733 6.34515 6.64116 6.69404 6.91782 6.94748 7.13516 7.21497 7.57728 7.64738 7.72219 7.90127 8.12605 8.54879 8.84830 9.39414 10.88766 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.011327 B = 0.004619 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.320515 B = 6059.912086 C = 6991.213280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.216 3.784 3 H 0.047 0.953 4 C -0.520 4.520 5 H 0.068 0.932 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.911 3.089 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.349 6.349 13 C 0.454 3.546 14 O -0.503 6.503 15 C 0.179 3.821 16 C -0.151 4.151 17 C -0.146 4.146 18 N -0.562 5.562 19 C 0.581 3.419 20 O -0.460 6.460 21 C -0.135 4.135 22 C -0.046 4.046 23 C -0.100 4.100 24 C -0.097 4.097 25 C -0.046 4.046 26 C -0.129 4.129 27 C 0.574 3.426 28 O -0.448 6.448 29 H 0.099 0.901 30 H 0.034 0.966 31 H 0.018 0.982 32 H 0.266 0.734 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.356 -13.586 16.878 21.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.164 3.836 3 H 0.064 0.936 4 C -0.558 4.558 5 H 0.086 0.914 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.738 3.262 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.265 6.265 13 C 0.295 3.705 14 O -0.391 6.391 15 C 0.096 3.904 16 C -0.208 4.208 17 C -0.203 4.203 18 N -0.306 5.306 19 C 0.371 3.629 20 O -0.331 6.331 21 C -0.139 4.139 22 C -0.065 4.065 23 C -0.118 4.118 24 C -0.115 4.115 25 C -0.065 4.065 26 C -0.133 4.133 27 C 0.363 3.637 28 O -0.317 6.317 29 H 0.118 0.882 30 H 0.053 0.947 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.158 0.842 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.387 -12.579 16.602 20.833 hybrid contribution 0.109 -0.197 -1.068 1.092 sum 0.496 -12.776 15.533 20.118 Atomic orbital electron populations 1.22112 0.97272 1.00037 1.01438 1.20707 0.91587 0.93846 0.77501 0.93562 1.21033 1.32469 1.13452 0.88824 0.91396 1.24884 0.94903 0.95098 0.99025 1.69916 1.36042 1.22528 1.24074 0.86228 0.78651 0.79531 0.81802 1.19489 1.20658 1.20668 1.86491 1.75223 1.43572 1.21231 1.23079 0.75183 0.86231 0.86035 1.90616 1.47583 1.16396 1.84497 1.20777 0.96986 0.79343 0.93309 1.22109 1.03888 1.00445 0.94398 1.22188 0.88734 1.03876 1.05519 1.46536 1.08582 1.08203 1.67274 1.18263 0.87039 0.83142 0.74501 1.90792 1.12020 1.86014 1.44306 1.20598 0.93898 0.94701 1.04705 1.20779 1.00300 0.90192 0.95197 1.21432 0.91961 1.00411 0.97977 1.21439 0.97935 0.94489 0.97667 1.20817 0.98305 0.92402 0.94944 1.20561 0.95020 0.93517 1.04209 1.18341 0.81862 0.88621 0.74890 1.90836 1.43724 1.54519 1.42643 0.88242 0.94685 0.96332 0.92428 0.90906 0.88963 0.90490 0.89797 0.90272 0.89486 0.84048 0.84187 0.84160 0.84001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 9.33 37.16 0.35 -3.73 16 2 C 0.22 6.07 2.56 -27.88 -0.07 6.00 16 3 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 4 C -0.52 -15.06 8.90 -34.44 -0.31 -15.36 16 5 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.74 11.32 55.43 0.63 -25.11 16 8 Si 0.91 21.50 29.54 -169.99 -5.02 16.48 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 O -0.35 -8.88 9.47 -39.25 -0.37 -9.26 16 13 C 0.45 10.25 5.92 36.01 0.21 10.46 16 14 O -0.50 -12.38 15.32 -18.75 -0.29 -12.67 16 15 C 0.18 3.10 1.05 -132.97 -0.14 2.96 16 16 C -0.15 -2.17 8.04 37.16 0.30 -1.88 16 17 C -0.15 -2.20 6.99 37.16 0.26 -1.94 16 18 N -0.56 -9.33 2.29 -104.88 -0.24 -9.57 16 19 C 0.58 8.82 7.82 -12.46 -0.10 8.72 16 20 O -0.46 -7.32 14.15 5.40 0.08 -7.25 16 21 C -0.14 -1.71 6.40 -104.83 -0.67 -2.38 16 22 C -0.05 -0.42 10.09 -39.32 -0.40 -0.82 16 23 C -0.10 -0.68 10.04 -39.45 -0.40 -1.07 16 24 C -0.10 -0.69 10.03 -39.45 -0.40 -1.09 16 25 C -0.05 -0.46 10.09 -39.32 -0.40 -0.86 16 26 C -0.13 -1.72 6.41 -104.83 -0.67 -2.39 16 27 C 0.57 9.68 7.30 -12.46 -0.09 9.59 16 28 O -0.45 -8.72 16.18 5.41 0.09 -8.63 16 29 H 0.10 2.82 6.07 -51.93 -0.32 2.50 16 30 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.27 7.87 -51.93 -0.41 0.86 16 35 H 0.08 1.22 6.95 -51.93 -0.36 0.86 16 36 H 0.08 1.41 7.20 -51.93 -0.37 1.04 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.09 1.14 6.99 -51.93 -0.36 0.77 16 39 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 359.02 15.07 5.41 5.41 Total: -1.00 -34.61 359.02 -7.45 -42.06 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -5.12 Total: 0.64 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -2.61 Total: 7.90 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.39 Total: -34.68 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.49 Total: -37.81 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.61 -7.45 -42.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770874917.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.037 kcal (2) G-P(sol) polarization free energy of solvation -34.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds