Wall clock time and date at job start Tue Mar 31 2020 17:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46986 * 2 1 4 4 C 1.50699 * 109.47480 * 239.99999 * 2 1 3 5 5 H 1.07996 * 120.00569 * 240.00013 * 4 2 1 6 6 C 1.37885 * 119.99640 * 59.99735 * 4 2 1 7 7 N 1.31516 * 120.00124 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99710 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47476 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46894 * 120.00180 * 8 6 4 11 11 H 1.48501 * 109.47096 * 239.99830 * 8 6 4 12 12 O 1.45206 * 109.47098 * 119.99952 * 2 1 3 13 13 C 1.34227 * 116.99672 * 269.99987 * 12 2 1 14 14 O 1.20821 * 120.00682 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99328 * 180.02562 * 13 12 2 16 16 C 1.52999 * 109.46817 * 205.27129 * 15 13 12 17 17 C 1.52995 * 109.46870 * 85.27455 * 15 13 12 18 18 N 1.46499 * 109.46973 * 325.27142 * 15 13 12 19 19 C 1.34523 * 124.46017 * 121.71320 * 18 15 13 20 20 O 1.21456 * 125.70684 * 0.02962 * 19 18 15 21 21 C 1.47810 * 108.57997 * 180.02562 * 19 18 15 22 22 C 1.38575 * 134.29117 * 180.02562 * 21 19 18 23 23 C 1.38613 * 119.71406 * 180.21104 * 22 21 19 24 24 C 1.38230 * 120.45708 * 359.51505 * 23 22 21 25 25 C 1.38607 * 120.46528 * 0.47782 * 24 23 22 26 26 C 1.38574 * 119.71774 * 359.77188 * 25 24 23 27 27 C 1.34522 * 124.45974 * 301.72558 * 18 15 13 28 28 O 1.21447 * 125.71369 * 0.02562 * 27 18 15 29 29 H 1.08997 * 109.47261 * 60.00394 * 1 2 3 30 30 H 1.09005 * 109.46986 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47506 * 299.99633 * 1 2 3 32 32 H 0.97004 * 119.99786 * 179.97438 * 7 6 4 33 33 H 1.08993 * 109.47330 * 180.02562 * 16 15 13 34 34 H 1.08999 * 109.47386 * 300.00641 * 16 15 13 35 35 H 1.09007 * 109.47128 * 59.99832 * 16 15 13 36 36 H 1.08992 * 109.47312 * 299.99310 * 17 15 13 37 37 H 1.09000 * 109.47585 * 59.99812 * 17 15 13 38 38 H 1.09006 * 109.46733 * 179.97438 * 17 15 13 39 39 H 1.07993 * 120.13739 * 359.94062 * 22 21 19 40 40 H 1.08001 * 119.76848 * 179.73095 * 23 22 21 41 41 H 1.08002 * 119.76281 * 180.24302 * 24 23 22 42 42 H 1.08002 * 120.14291 * 179.74514 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 3.1466 -2.2869 -3.6038 10 1 1.1661 -1.5866 -4.8161 11 1 3.1466 -0.1872 -4.8165 12 8 2.0140 -0.6845 1.1856 13 6 2.2171 0.0640 2.2811 14 8 1.9973 1.2517 2.2507 15 6 2.7193 -0.5771 3.5492 16 6 2.2857 0.2634 4.7519 17 6 4.2465 -0.6596 3.5087 18 7 2.1603 -1.9259 3.6689 19 6 2.8951 -3.0486 3.7651 20 8 4.1084 -3.1038 3.7670 21 6 1.9787 -4.2038 3.8683 22 6 2.1571 -5.5728 3.9879 23 6 1.0517 -6.4061 4.0589 24 6 -0.2260 -5.8800 4.0212 25 6 -0.4197 -4.5127 3.9021 26 6 0.6759 -3.6678 3.8250 27 6 0.8446 -2.2049 3.6970 28 8 -0.0542 -1.3911 3.6276 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8899 32 1 0.7095 1.1619 -3.4844 33 1 2.6493 -0.2000 5.6690 34 1 2.7015 1.2670 4.6627 35 1 1.1976 0.3223 4.7807 36 1 4.5554 -1.2584 2.6519 37 1 4.6624 0.3440 3.4195 38 1 4.6098 -1.1229 4.4260 39 1 3.1531 -5.9890 4.0212 40 1 1.1897 -7.4736 4.1477 41 1 -1.0793 -6.5393 4.0813 42 1 -1.4203 -4.1075 3.8691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770874917.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:55 Heat of formation + Delta-G solvation = -116.204373 kcal Electronic energy + Delta-G solvation = -29507.567135 eV Core-core repulsion = 25418.404607 eV Total energy + Delta-G solvation = -4089.162528 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.72404 -41.54850 -39.89340 -39.53474 -38.05312 -37.23183 -35.52954 -35.36197 -32.09644 -31.79775 -31.42405 -28.71570 -27.58095 -26.39913 -26.06534 -24.93238 -23.10724 -22.85088 -21.72202 -20.68715 -19.44501 -18.78241 -18.64732 -18.07613 -17.96349 -17.42138 -16.99234 -16.52478 -16.42228 -16.27979 -15.70608 -15.36522 -15.22751 -15.05234 -15.01954 -14.69044 -14.18096 -14.09300 -13.98024 -13.63345 -13.58212 -13.39641 -13.27572 -13.18066 -13.02055 -12.89966 -12.81886 -12.50699 -12.47529 -12.22347 -12.00294 -11.73541 -11.51734 -11.15595 -11.12182 -10.93757 -10.68260 -10.18205 -10.17423 -8.36045 -6.54324 -1.00716 0.01688 0.73418 0.99107 1.27464 1.35686 1.38142 1.48623 1.57022 1.91803 2.33140 2.56684 2.67842 2.94030 3.17231 3.31619 3.40761 3.62520 3.68460 3.87779 4.09103 4.21603 4.27197 4.36193 4.40573 4.45178 4.49738 4.51452 4.64699 4.66882 4.70101 4.85453 4.87354 4.88846 4.99157 5.04717 5.24476 5.29617 5.36599 5.46659 5.50057 5.74079 5.75490 5.92372 6.04993 6.41521 6.48771 6.72168 7.16794 8.72398 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.011327 B = 0.004619 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.320515 B = 6059.912086 C = 6991.213280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.219 3.781 3 H 0.009 0.991 4 C -0.549 4.549 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.986 3.014 9 H -0.265 1.265 10 H -0.267 1.267 11 H -0.272 1.272 12 O -0.359 6.359 13 C 0.446 3.554 14 O -0.532 6.532 15 C 0.180 3.820 16 C -0.143 4.143 17 C -0.137 4.137 18 N -0.571 5.571 19 C 0.576 3.424 20 O -0.474 6.474 21 C -0.156 4.156 22 C -0.041 4.041 23 C -0.080 4.080 24 C -0.081 4.081 25 C -0.049 4.049 26 C -0.160 4.160 27 C 0.565 3.435 28 O -0.494 6.494 29 H 0.086 0.914 30 H 0.037 0.963 31 H 0.014 0.986 32 H 0.273 0.727 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.162 0.838 40 H 0.187 0.813 41 H 0.182 0.818 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.681 -17.553 17.381 24.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.027 0.973 4 C -0.586 4.586 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.808 3.192 9 H -0.189 1.189 10 H -0.192 1.192 11 H -0.197 1.197 12 O -0.275 6.275 13 C 0.288 3.712 14 O -0.421 6.421 15 C 0.095 3.905 16 C -0.200 4.200 17 C -0.194 4.194 18 N -0.314 5.314 19 C 0.368 3.632 20 O -0.347 6.347 21 C -0.159 4.159 22 C -0.059 4.059 23 C -0.097 4.097 24 C -0.099 4.099 25 C -0.068 4.068 26 C -0.163 4.163 27 C 0.356 3.644 28 O -0.367 6.367 29 H 0.104 0.896 30 H 0.057 0.943 31 H 0.033 0.967 32 H 0.082 0.918 33 H 0.128 0.872 34 H 0.115 0.885 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.131 0.869 39 H 0.180 0.820 40 H 0.204 0.796 41 H 0.200 0.800 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.721 -16.567 17.135 23.845 hybrid contribution -0.033 0.964 -1.161 1.509 sum 0.689 -15.602 15.974 22.340 Atomic orbital electron populations 1.21901 0.96870 0.99818 1.00469 1.20424 0.91876 0.92147 0.78952 0.97346 1.21221 1.33710 1.13917 0.89787 0.91869 1.25875 0.94520 0.95637 1.02145 1.70023 1.36315 1.23533 1.25395 0.85096 0.78486 0.78403 0.77188 1.18877 1.19237 1.19683 1.86487 1.75633 1.43822 1.21541 1.24295 0.74063 0.86168 0.86670 1.90579 1.48793 1.17734 1.84990 1.20936 0.98133 0.80455 0.90936 1.22119 1.02700 1.00649 0.94561 1.22181 0.86947 1.04458 1.05817 1.46683 1.09045 1.08230 1.67447 1.18742 0.87204 0.83566 0.73719 1.90763 1.12531 1.86276 1.45155 1.20527 0.92366 0.95409 1.07618 1.21211 1.02412 0.88661 0.93623 1.22003 0.90737 1.02255 0.94737 1.21953 0.99753 0.93241 0.94954 1.21162 0.97713 0.93654 0.94277 1.20456 0.96725 0.91271 1.07879 1.19076 0.81420 0.90313 0.73549 1.90792 1.44696 1.56033 1.45149 0.89571 0.94346 0.96724 0.91750 0.87228 0.88451 0.92454 0.91901 0.89126 0.86947 0.82041 0.79626 0.80031 0.83434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.56 9.33 71.98 0.67 -6.89 16 2 C 0.22 13.02 2.56 29.85 0.08 13.10 16 3 H 0.01 0.57 7.16 -2.38 -0.02 0.56 16 4 C -0.55 -32.86 8.90 25.60 0.23 -32.63 16 5 H 0.06 3.75 7.81 -2.91 -0.02 3.72 16 6 C 0.02 1.04 5.30 84.66 0.45 1.49 16 7 N -0.92 -54.12 11.32 21.45 0.24 -53.88 16 8 Si 0.99 44.02 29.54 68.60 2.03 46.05 16 9 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 12 O -0.36 -19.36 9.47 -51.38 -0.49 -19.84 16 13 C 0.45 21.35 5.92 71.24 0.42 21.77 16 14 O -0.53 -27.94 15.32 21.98 0.34 -27.61 16 15 C 0.18 6.45 1.05 2.86 0.00 6.45 16 16 C -0.14 -4.22 8.04 71.98 0.58 -3.64 16 17 C -0.14 -4.18 6.99 71.98 0.50 -3.68 16 18 N -0.57 -19.66 2.29 -722.65 -1.65 -21.31 16 19 C 0.58 17.64 7.82 86.82 0.68 18.32 16 20 O -0.47 -15.06 14.15 -3.58 -0.05 -15.11 16 21 C -0.16 -3.78 6.40 -20.00 -0.13 -3.91 16 22 C -0.04 -0.60 10.09 22.44 0.23 -0.38 16 23 C -0.08 -0.66 10.04 22.36 0.22 -0.44 16 24 C -0.08 -0.78 10.03 22.36 0.22 -0.55 16 25 C -0.05 -0.90 10.09 22.44 0.23 -0.67 16 26 C -0.16 -4.24 6.41 -20.00 -0.13 -4.37 16 27 C 0.56 20.03 7.30 86.82 0.63 20.67 16 28 O -0.49 -20.65 16.18 -3.55 -0.06 -20.70 16 29 H 0.09 5.11 6.07 -2.39 -0.01 5.10 16 30 H 0.04 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.01 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 33 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.10 2.74 7.87 -2.39 -0.02 2.72 16 35 H 0.06 1.93 6.95 -2.38 -0.02 1.91 16 36 H 0.06 2.18 7.20 -2.39 -0.02 2.17 16 37 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.11 2.84 6.99 -2.38 -0.02 2.83 16 39 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 40 H 0.19 -0.04 8.06 -2.91 -0.02 -0.06 16 41 H 0.18 0.31 8.06 -2.91 -0.02 0.28 16 42 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -81.32 359.02 6.30 -75.01 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 1.06 Total: 12.75 kcal Atomic # 6 Polarization: 19.76 SS G_CDS: 4.89 Total: 24.65 kcal Atomic # 7 Polarization: -73.78 SS G_CDS: -1.41 Total: -75.18 kcal Atomic # 8 Polarization: -83.01 SS G_CDS: -0.26 Total: -83.27 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -81.32 6.30 -75.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770874917.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.191 kcal (2) G-P(sol) polarization free energy of solvation -81.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds