Wall clock time and date at job start Tue Mar 31 2020 17:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 117.00010 * 2 1 4 4 O 1.20833 * 119.99779 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00094 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47037 * 185.19384 * 5 3 2 7 7 H 1.08998 * 109.47552 * 303.81116 * 6 5 3 8 8 C 1.53004 * 109.47336 * 183.81078 * 6 5 3 9 9 O 1.45201 * 109.46980 * 63.81231 * 6 5 3 10 10 C 1.34864 * 117.00050 * 209.42364 * 9 6 5 11 11 O 1.21584 * 120.00115 * 5.03029 * 10 9 6 12 12 C 1.46718 * 120.00018 * 185.03536 * 10 9 6 13 13 C 1.36213 * 125.45072 * 185.23327 * 12 10 9 14 14 C 1.41661 * 107.74286 * 180.25810 * 13 12 10 15 15 C 1.40038 * 133.33410 * 179.79717 * 14 13 12 16 16 C 1.36577 * 119.82589 * 179.97438 * 15 14 13 17 17 C 1.38853 * 120.60378 * 359.95557 * 16 15 14 18 18 C 1.37847 * 120.63805 * 0.02562 * 17 16 15 19 19 C 1.39092 * 119.81217 * 359.97438 * 18 17 16 20 20 N 1.37828 * 133.14518 * 180.02562 * 19 18 17 21 21 C 1.36866 * 125.62359 * 359.96323 * 20 19 18 22 22 H 1.07998 * 119.99975 * 223.11417 * 21 20 19 23 23 C 1.39027 * 120.00237 * 43.11835 * 21 20 19 24 24 N 1.31334 * 120.00391 * 200.04443 * 23 21 20 25 25 Si 1.86806 * 119.99705 * 20.04531 * 23 21 20 26 26 H 1.48500 * 109.46878 * 264.78725 * 25 23 21 27 27 H 1.48501 * 109.47124 * 24.78201 * 25 23 21 28 28 H 1.48500 * 109.47161 * 144.78721 * 25 23 21 29 29 H 1.08996 * 109.47431 * 300.00144 * 1 2 3 30 30 H 1.08999 * 109.46811 * 60.00565 * 1 2 3 31 31 H 1.09002 * 109.46337 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47313 * 65.20279 * 5 3 2 33 33 H 1.09000 * 109.47404 * 305.19709 * 5 3 2 34 34 H 1.08997 * 109.47035 * 64.74492 * 8 6 5 35 35 H 1.08991 * 109.47330 * 184.75374 * 8 6 5 36 36 H 1.09011 * 109.46658 * 304.75364 * 8 6 5 37 37 H 1.07996 * 126.12565 * 359.97438 * 13 12 10 38 38 H 1.08004 * 120.08976 * 359.95000 * 15 14 13 39 39 H 1.08003 * 119.69415 * 179.97438 * 16 15 14 40 40 H 1.07997 * 119.68674 * 180.02562 * 17 16 15 41 41 H 1.08001 * 120.09304 * 179.97438 * 18 17 16 42 42 H 0.97001 * 120.00360 * 174.98887 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0004 2.7362 0.1310 7 1 3.5514 3.3217 -0.6713 8 6 5.5248 2.8260 0.0363 9 8 3.5637 3.2581 1.4137 10 6 3.2966 4.5785 1.4787 11 8 3.3366 5.2572 0.4707 12 6 2.9579 5.1960 2.7658 13 6 2.5721 6.4901 2.9440 14 6 2.3454 6.6863 4.3285 15 6 1.9443 7.7913 5.0895 16 6 1.8086 7.6706 6.4432 17 6 2.0641 6.4604 7.0741 18 6 2.4597 5.3585 6.3464 19 6 2.6048 5.4568 4.9666 20 7 2.9752 4.5561 3.9913 21 6 3.3113 3.2462 4.2020 22 1 4.1612 2.8180 3.6915 23 6 2.5586 2.4669 5.0731 24 7 3.0711 1.3705 5.5833 25 14 0.8181 2.9791 5.5180 26 1 0.8374 3.7447 6.7903 27 1 0.2610 3.8306 4.4365 28 1 -0.0275 1.7693 5.6810 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 3.9521 0.8633 -0.9321 33 1 3.9599 0.7026 0.8406 34 1 5.8461 2.5133 -0.9572 35 1 5.8400 3.8542 0.2133 36 1 5.9744 2.1740 0.7854 37 1 2.4635 7.2346 2.1692 38 1 1.7431 8.7365 4.6074 39 1 1.4996 8.5243 7.0281 40 1 1.9517 6.3814 8.1453 41 1 2.6564 4.4215 6.8463 42 1 2.5746 0.8658 6.2463 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774518052.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:52 Heat of formation + Delta-G solvation = -106.647524 kcal Electronic energy + Delta-G solvation = -29168.538260 eV Core-core repulsion = 25079.790149 eV Total energy + Delta-G solvation = -4088.748112 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.83200 -40.36685 -39.34744 -36.68509 -36.21199 -35.85152 -33.57686 -33.03498 -31.39083 -29.33779 -29.01338 -28.40749 -26.94193 -24.91815 -24.20719 -22.09407 -21.16359 -20.83167 -20.10864 -19.28634 -18.34734 -17.50677 -17.33681 -16.63555 -16.34881 -15.97632 -15.60965 -15.31643 -15.17202 -14.41900 -14.00273 -13.97798 -13.70107 -13.40445 -13.19084 -13.04360 -12.98307 -12.94092 -12.41868 -12.28442 -12.06411 -12.05183 -11.97820 -11.81849 -11.42100 -11.01695 -10.98414 -10.80202 -10.68546 -10.53331 -10.34720 -10.27051 -10.16890 -9.95317 -9.88522 -9.47427 -8.70721 -7.42231 -7.02467 -6.89921 -4.53849 1.46762 2.39784 2.45683 2.69870 2.79949 2.99817 3.10165 3.20034 3.23007 3.87419 3.93620 4.12005 4.57387 4.64469 4.77560 4.83269 5.12886 5.16896 5.22219 5.25333 5.31060 5.46785 5.57306 5.59838 5.62621 5.69440 5.82741 5.92515 5.96816 6.15285 6.20499 6.21875 6.38635 6.50756 6.57634 6.72913 6.80518 6.97831 7.17562 7.23600 7.32661 7.56726 7.59649 7.83716 7.90635 8.13770 8.46442 8.69512 9.00194 10.11033 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.012639 B = 0.005056 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.898419 B = 5537.153836 C = 6531.857224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.362 6.362 3 C 0.461 3.539 4 O -0.494 6.494 5 C -0.109 4.109 6 C 0.090 3.910 7 H 0.093 0.907 8 C -0.166 4.166 9 O -0.319 6.319 10 C 0.552 3.448 11 O -0.522 6.522 12 C -0.011 4.011 13 C -0.154 4.154 14 C -0.126 4.126 15 C -0.076 4.076 16 C -0.158 4.158 17 C -0.132 4.132 18 C -0.097 4.097 19 C 0.056 3.944 20 N -0.256 5.256 21 C -0.337 4.337 22 H 0.129 0.871 23 C 0.085 3.915 24 N -0.823 5.823 25 Si 0.864 3.136 26 H -0.244 1.244 27 H -0.254 1.254 28 H -0.281 1.281 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.139 0.861 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.119 0.881 42 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 -1.720 -6.244 6.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.279 6.279 3 C 0.303 3.697 4 O -0.380 6.380 5 C -0.146 4.146 6 C 0.034 3.966 7 H 0.111 0.889 8 C -0.223 4.223 9 O -0.234 6.234 10 C 0.399 3.601 11 O -0.412 6.412 12 C -0.123 4.123 13 C -0.181 4.181 14 C -0.131 4.131 15 C -0.095 4.095 16 C -0.177 4.177 17 C -0.152 4.152 18 C -0.117 4.117 19 C -0.058 4.058 20 N 0.081 4.919 21 C -0.465 4.465 22 H 0.146 0.854 23 C -0.129 4.129 24 N -0.452 5.452 25 Si 0.688 3.312 26 H -0.169 1.169 27 H -0.178 1.178 28 H -0.207 1.207 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.157 0.843 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.137 0.863 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.514 -1.919 -6.496 6.793 hybrid contribution -1.063 -0.086 0.187 1.083 sum -1.577 -2.005 -6.309 6.805 Atomic orbital electron populations 1.23226 0.76553 1.03359 1.02620 1.86473 1.23333 1.33630 1.84507 1.23620 0.92084 0.81422 0.72576 1.90729 1.66997 1.36175 1.44083 1.21551 0.88342 0.98140 1.06615 1.22390 0.95080 0.92351 0.86764 0.88937 1.22177 0.93669 1.03755 1.02747 1.86935 1.77324 1.24849 1.34335 1.19854 0.72561 0.80118 0.87589 1.90768 1.51154 1.63433 1.35838 1.19221 1.15533 0.93987 0.83596 1.20403 1.08391 0.94468 0.94847 1.17914 1.08399 0.93702 0.93071 1.20161 0.99546 0.96437 0.93305 1.20358 1.05638 0.97315 0.94377 1.20580 1.03280 0.92752 0.98626 1.20207 1.01577 0.99112 0.90801 1.18383 1.07548 0.89257 0.90650 1.40388 1.41386 1.07900 1.02274 1.19459 1.14619 0.83152 1.29231 0.85357 1.25436 0.98867 0.94339 0.94240 1.69626 1.38107 1.14788 1.22648 0.87031 0.83192 0.79022 0.81925 1.16881 1.17788 1.20722 0.91766 0.92108 0.88300 0.85987 0.86109 0.90866 0.91363 0.91012 0.84277 0.87056 0.87205 0.86914 0.86312 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.51 16 2 O -0.36 -5.38 10.57 -39.25 -0.41 -5.80 16 3 C 0.46 7.67 7.79 36.00 0.28 7.95 16 4 O -0.49 -10.10 15.23 -23.60 -0.36 -10.46 16 5 C -0.11 -1.46 5.54 -27.88 -0.15 -1.61 16 6 C 0.09 1.46 2.15 -26.73 -0.06 1.40 16 7 H 0.09 1.60 6.89 -51.93 -0.36 1.24 16 8 C -0.17 -2.16 9.55 37.16 0.35 -1.80 16 9 O -0.32 -6.82 7.09 -45.82 -0.32 -7.14 16 10 C 0.55 12.79 7.87 34.16 0.27 13.06 16 11 O -0.52 -12.13 16.09 -19.33 -0.31 -12.44 16 12 C -0.01 -0.26 6.76 -82.27 -0.56 -0.81 16 13 C -0.15 -3.48 10.55 -39.00 -0.41 -3.90 16 14 C -0.13 -2.82 6.16 -106.90 -0.66 -3.48 16 15 C -0.08 -1.43 10.06 -39.51 -0.40 -1.83 16 16 C -0.16 -2.78 9.97 -39.95 -0.40 -3.18 16 17 C -0.13 -2.50 10.02 -39.50 -0.40 -2.89 16 18 C -0.10 -2.17 6.83 -39.41 -0.27 -2.44 16 19 C 0.06 1.35 5.18 -83.83 -0.43 0.92 16 20 N -0.26 -6.52 2.40 -56.10 -0.13 -6.65 16 21 C -0.34 -8.86 9.00 -15.01 -0.14 -8.99 16 22 H 0.13 3.49 7.26 -52.49 -0.38 3.11 16 23 C 0.09 2.21 4.89 -17.47 -0.09 2.12 16 24 N -0.82 -21.31 13.95 55.50 0.77 -20.54 16 25 Si 0.86 20.65 24.42 -169.99 -4.15 16.50 16 26 H -0.24 -5.47 5.65 56.52 0.32 -5.15 16 27 H -0.25 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 30 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 37 H 0.14 2.81 8.06 -52.49 -0.42 2.39 16 38 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 39 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 40 H 0.11 1.80 8.06 -52.49 -0.42 1.37 16 41 H 0.12 2.69 5.94 -52.49 -0.31 2.38 16 42 H 0.29 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 358.24 15.07 5.40 5.40 Total: -1.00 -31.93 358.24 -6.85 -38.77 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.34 Total: 6.33 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -1.98 Total: -3.97 kcal Atomic # 7 Polarization: -27.83 SS G_CDS: 0.64 Total: -27.19 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -1.41 Total: -35.84 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.15 Total: 16.50 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.93 -6.85 -38.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774518052.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.875 kcal (2) G-P(sol) polarization free energy of solvation -31.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds