Wall clock time and date at job start Tue Mar 31 2020 17:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 117.00010 * 2 1 4 4 O 1.20833 * 119.99779 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00094 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47037 * 185.19384 * 5 3 2 7 7 H 1.08998 * 109.47552 * 303.81116 * 6 5 3 8 8 C 1.53004 * 109.47336 * 183.81078 * 6 5 3 9 9 O 1.45201 * 109.46980 * 63.81231 * 6 5 3 10 10 C 1.34864 * 117.00050 * 209.42364 * 9 6 5 11 11 O 1.21584 * 120.00115 * 5.03029 * 10 9 6 12 12 C 1.46718 * 120.00018 * 185.03536 * 10 9 6 13 13 C 1.36213 * 125.45072 * 185.23327 * 12 10 9 14 14 C 1.41661 * 107.74286 * 180.25810 * 13 12 10 15 15 C 1.40038 * 133.33410 * 179.79717 * 14 13 12 16 16 C 1.36577 * 119.82589 * 179.97438 * 15 14 13 17 17 C 1.38853 * 120.60378 * 359.95557 * 16 15 14 18 18 C 1.37847 * 120.63805 * 0.02562 * 17 16 15 19 19 C 1.39092 * 119.81217 * 359.97438 * 18 17 16 20 20 N 1.37828 * 133.14518 * 180.02562 * 19 18 17 21 21 C 1.36866 * 125.62359 * 359.96323 * 20 19 18 22 22 H 1.07998 * 119.99975 * 223.11417 * 21 20 19 23 23 C 1.39027 * 120.00237 * 43.11835 * 21 20 19 24 24 N 1.31334 * 120.00391 * 200.04443 * 23 21 20 25 25 Si 1.86806 * 119.99705 * 20.04531 * 23 21 20 26 26 H 1.48500 * 109.46878 * 264.78725 * 25 23 21 27 27 H 1.48501 * 109.47124 * 24.78201 * 25 23 21 28 28 H 1.48500 * 109.47161 * 144.78721 * 25 23 21 29 29 H 1.08996 * 109.47431 * 300.00144 * 1 2 3 30 30 H 1.08999 * 109.46811 * 60.00565 * 1 2 3 31 31 H 1.09002 * 109.46337 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47313 * 65.20279 * 5 3 2 33 33 H 1.09000 * 109.47404 * 305.19709 * 5 3 2 34 34 H 1.08997 * 109.47035 * 64.74492 * 8 6 5 35 35 H 1.08991 * 109.47330 * 184.75374 * 8 6 5 36 36 H 1.09011 * 109.46658 * 304.75364 * 8 6 5 37 37 H 1.07996 * 126.12565 * 359.97438 * 13 12 10 38 38 H 1.08004 * 120.08976 * 359.95000 * 15 14 13 39 39 H 1.08003 * 119.69415 * 179.97438 * 16 15 14 40 40 H 1.07997 * 119.68674 * 180.02562 * 17 16 15 41 41 H 1.08001 * 120.09304 * 179.97438 * 18 17 16 42 42 H 0.97001 * 120.00360 * 174.98887 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0004 2.7362 0.1310 7 1 3.5514 3.3217 -0.6713 8 6 5.5248 2.8260 0.0363 9 8 3.5637 3.2581 1.4137 10 6 3.2966 4.5785 1.4787 11 8 3.3366 5.2572 0.4707 12 6 2.9579 5.1960 2.7658 13 6 2.5721 6.4901 2.9440 14 6 2.3454 6.6863 4.3285 15 6 1.9443 7.7913 5.0895 16 6 1.8086 7.6706 6.4432 17 6 2.0641 6.4604 7.0741 18 6 2.4597 5.3585 6.3464 19 6 2.6048 5.4568 4.9666 20 7 2.9752 4.5561 3.9913 21 6 3.3113 3.2462 4.2020 22 1 4.1612 2.8180 3.6915 23 6 2.5586 2.4669 5.0731 24 7 3.0711 1.3705 5.5833 25 14 0.8181 2.9791 5.5180 26 1 0.8374 3.7447 6.7903 27 1 0.2610 3.8306 4.4365 28 1 -0.0275 1.7693 5.6810 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 3.9521 0.8633 -0.9321 33 1 3.9599 0.7026 0.8406 34 1 5.8461 2.5133 -0.9572 35 1 5.8400 3.8542 0.2133 36 1 5.9744 2.1740 0.7854 37 1 2.4635 7.2346 2.1692 38 1 1.7431 8.7365 4.6074 39 1 1.4996 8.5243 7.0281 40 1 1.9517 6.3814 8.1453 41 1 2.6564 4.4215 6.8463 42 1 2.5746 0.8658 6.2463 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774518052.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:51 Heat of formation + Delta-G solvation = -124.333181 kcal Electronic energy + Delta-G solvation = -29169.305168 eV Core-core repulsion = 25079.790149 eV Total energy + Delta-G solvation = -4089.515019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.54069 -41.72577 -40.93365 -38.12672 -37.79229 -37.36161 -35.43805 -34.36973 -33.16052 -30.95581 -30.26770 -29.96937 -27.99547 -26.77052 -25.81660 -23.43848 -22.83897 -22.33540 -21.47593 -21.02738 -20.14574 -19.02061 -18.73851 -18.01668 -17.69021 -17.60243 -17.23771 -16.93315 -16.72854 -16.21966 -15.63087 -15.35989 -15.09130 -14.93268 -14.78416 -14.67592 -14.46169 -14.17039 -14.06162 -13.78470 -13.71087 -13.27303 -13.13644 -13.08688 -13.00259 -12.79863 -12.51925 -12.36239 -12.09035 -12.02616 -11.90091 -11.82389 -11.66766 -11.54454 -11.52465 -11.33046 -10.46871 -9.11506 -8.85454 -8.70601 -6.49685 -0.21471 0.84581 0.98905 1.10349 1.11049 1.19315 1.27870 1.65737 1.69317 1.96739 2.13185 2.37735 2.71857 3.11054 3.42533 3.67791 3.79684 3.97787 4.00697 4.14580 4.20730 4.22889 4.26467 4.32881 4.40784 4.52656 4.54693 4.58665 4.60461 4.69143 4.77759 4.79340 5.00103 5.05974 5.13149 5.23079 5.28726 5.36732 5.39191 5.65776 5.75600 5.80149 5.92323 6.07226 6.36507 6.63515 6.67437 6.86172 7.15697 8.22806 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.012639 B = 0.005056 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.898419 B = 5537.153836 C = 6531.857224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.455 3.545 4 O -0.542 6.542 5 C -0.102 4.102 6 C 0.077 3.923 7 H 0.079 0.921 8 C -0.157 4.157 9 O -0.336 6.336 10 C 0.548 3.452 11 O -0.534 6.534 12 C -0.043 4.043 13 C -0.149 4.149 14 C -0.145 4.145 15 C -0.072 4.072 16 C -0.149 4.149 17 C -0.107 4.107 18 C -0.140 4.140 19 C 0.040 3.960 20 N -0.282 5.282 21 C -0.349 4.349 22 H 0.103 0.897 23 C 0.063 3.937 24 N -0.853 5.853 25 Si 0.903 3.097 26 H -0.218 1.218 27 H -0.291 1.291 28 H -0.274 1.274 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.138 0.862 32 H 0.177 0.823 33 H 0.126 0.874 34 H 0.116 0.884 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.159 0.841 38 H 0.148 0.852 39 H 0.160 0.840 40 H 0.150 0.850 41 H 0.106 0.894 42 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.895 -0.426 -5.471 5.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.300 3.700 4 O -0.432 6.432 5 C -0.139 4.139 6 C 0.022 3.978 7 H 0.097 0.903 8 C -0.214 4.214 9 O -0.252 6.252 10 C 0.396 3.604 11 O -0.426 6.426 12 C -0.155 4.155 13 C -0.176 4.176 14 C -0.150 4.150 15 C -0.090 4.090 16 C -0.168 4.168 17 C -0.127 4.127 18 C -0.160 4.160 19 C -0.074 4.074 20 N 0.053 4.947 21 C -0.476 4.476 22 H 0.120 0.880 23 C -0.148 4.148 24 N -0.484 5.484 25 Si 0.727 3.273 26 H -0.141 1.141 27 H -0.217 1.217 28 H -0.199 1.199 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.156 0.844 32 H 0.195 0.805 33 H 0.144 0.856 34 H 0.135 0.865 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.177 0.823 38 H 0.166 0.834 39 H 0.177 0.823 40 H 0.168 0.832 41 H 0.124 0.876 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.018 -0.666 -5.703 5.831 hybrid contribution -0.939 -0.295 -0.080 0.988 sum -1.957 -0.962 -5.782 6.180 Atomic orbital electron populations 1.23502 0.75293 1.05733 1.01903 1.86474 1.24667 1.32643 1.83908 1.24319 0.93359 0.81163 0.71148 1.90712 1.68223 1.37715 1.46515 1.21737 0.86251 0.96351 1.09539 1.22873 0.97131 0.93581 0.84181 0.90304 1.22164 0.91027 1.02783 1.05462 1.86903 1.77104 1.23835 1.37362 1.19848 0.72446 0.80804 0.87282 1.90724 1.51986 1.63843 1.36000 1.19718 1.16537 0.94961 0.84239 1.20778 1.06842 0.94112 0.95855 1.18344 1.09135 0.94502 0.92992 1.20655 0.97799 0.96609 0.93978 1.20920 1.03500 0.98179 0.94154 1.21159 0.99304 0.91904 1.00381 1.20352 1.05026 1.00308 0.90316 1.18922 1.07082 0.89803 0.91550 1.40386 1.43626 1.07770 1.02892 1.19182 1.14418 0.84232 1.29816 0.87960 1.25749 1.00377 0.94351 0.94371 1.69639 1.39097 1.15708 1.23989 0.86501 0.80694 0.78560 0.81544 1.14065 1.21716 1.19934 0.93995 0.91392 0.84360 0.80529 0.85565 0.86539 0.93390 0.90550 0.82327 0.83400 0.82257 0.83225 0.87592 0.89587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.56 113.37 1.20 1.91 16 2 O -0.36 -10.65 10.57 -51.40 -0.54 -11.19 16 3 C 0.46 15.46 7.79 71.23 0.56 16.01 16 4 O -0.54 -23.27 15.23 26.58 0.40 -22.86 16 5 C -0.10 -2.67 5.54 29.85 0.17 -2.51 16 6 C 0.08 2.55 2.15 30.60 0.07 2.62 16 7 H 0.08 2.81 6.89 -2.39 -0.02 2.80 16 8 C -0.16 -4.02 9.55 71.98 0.69 -3.33 16 9 O -0.34 -15.24 7.09 -53.11 -0.38 -15.62 16 10 C 0.55 26.85 7.87 70.04 0.55 27.40 16 11 O -0.53 -25.88 16.09 19.56 0.31 -25.57 16 12 C -0.04 -2.19 6.76 39.87 0.27 -1.92 16 13 C -0.15 -6.78 10.55 22.64 0.24 -6.54 16 14 C -0.15 -6.36 6.16 -21.34 -0.13 -6.49 16 15 C -0.07 -2.44 10.06 22.32 0.22 -2.22 16 16 C -0.15 -4.46 9.97 22.03 0.22 -4.24 16 17 C -0.11 -3.65 10.02 22.32 0.22 -3.42 16 18 C -0.14 -6.10 6.83 22.38 0.15 -5.94 16 19 C 0.04 1.96 5.18 39.06 0.20 2.16 16 20 N -0.28 -14.96 2.40 -331.41 -0.79 -15.76 16 21 C -0.35 -19.44 9.00 84.10 0.76 -18.68 16 22 H 0.10 6.03 7.26 -2.91 -0.02 6.01 16 23 C 0.06 3.38 4.89 84.96 0.42 3.79 16 24 N -0.85 -45.85 13.95 21.67 0.30 -45.55 16 25 Si 0.90 43.65 24.42 68.60 1.67 45.32 16 26 H -0.22 -9.44 5.65 99.48 0.56 -8.88 16 27 H -0.29 -15.74 7.11 99.48 0.71 -15.03 16 28 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 29 H 0.04 1.21 8.13 -2.39 -0.02 1.19 16 30 H 0.07 1.57 8.13 -2.39 -0.02 1.55 16 31 H 0.14 2.24 8.14 -2.39 -0.02 2.23 16 32 H 0.18 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.13 3.24 8.14 -2.39 -0.02 3.22 16 34 H 0.12 1.93 8.14 -2.39 -0.02 1.92 16 35 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.16 6.37 8.06 -2.91 -0.02 6.35 16 38 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 39 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 40 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 41 H 0.11 4.81 5.94 -2.91 -0.02 4.80 16 42 H 0.29 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -75.48 358.24 7.68 -67.80 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.90 Total: 24.83 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 5.79 Total: -1.41 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: -0.49 Total: -61.30 kcal Atomic # 8 Polarization: -75.04 SS G_CDS: -0.20 Total: -75.24 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.67 Total: 45.32 kcal Total: -75.48 7.68 -67.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774518052.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.531 kcal (2) G-P(sol) polarization free energy of solvation -75.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds