Wall clock time and date at job start Tue Mar 31 2020 18:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47249 * 2 1 4 4 C 1.50702 * 109.46962 * 240.00097 * 2 1 3 5 5 O 1.20825 * 119.99666 * 239.99996 * 4 2 1 6 6 O 1.34230 * 119.99888 * 59.99813 * 4 2 1 7 7 C 1.45195 * 116.99783 * 179.97438 * 6 4 2 8 8 C 1.50705 * 109.47203 * 180.02562 * 7 6 4 9 9 C 1.38634 * 119.74826 * 269.72842 * 8 7 6 10 10 C 1.37616 * 120.24955 * 179.72231 * 9 8 7 11 11 C 1.40713 * 119.74457 * 0.56621 * 10 9 8 12 12 C 1.41393 * 120.24727 * 179.68366 * 11 10 9 13 13 H 1.08008 * 120.00063 * 155.31577 * 12 11 10 14 14 C 1.39935 * 120.00013 * 335.31511 * 12 11 10 15 15 N 1.30823 * 120.00240 * 342.23245 * 14 12 11 16 16 Si 1.86800 * 120.00277 * 162.23034 * 14 12 11 17 17 H 1.48497 * 109.47164 * 94.66321 * 16 14 12 18 18 H 1.48503 * 109.47263 * 214.66647 * 16 14 12 19 19 H 1.48500 * 109.47221 * 334.66700 * 16 14 12 20 20 C 1.40721 * 119.50677 * 359.70937 * 11 10 9 21 21 C 1.37614 * 119.75092 * 359.97438 * 20 11 10 22 22 N 1.46500 * 109.47386 * 119.99841 * 2 1 3 23 23 C 1.33865 * 122.76607 * 239.99897 * 22 2 1 24 24 O 1.21232 * 125.39716 * 359.97438 * 23 22 2 25 25 C 1.51314 * 109.20665 * 180.24013 * 23 22 2 26 26 C 1.54215 * 103.55741 * 359.63790 * 25 23 22 27 27 C 1.33877 * 122.75871 * 59.99661 * 22 2 1 28 28 O 1.21228 * 125.39858 * 0.02586 * 27 22 2 29 29 H 1.09003 * 109.46913 * 300.00203 * 1 2 3 30 30 H 1.09001 * 109.47335 * 59.99783 * 1 2 3 31 31 H 1.08996 * 109.47377 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47627 * 300.00071 * 7 6 4 33 33 H 1.09003 * 109.47384 * 60.00511 * 7 6 4 34 34 H 1.08004 * 119.87432 * 359.97438 * 9 8 7 35 35 H 1.07994 * 120.13046 * 180.28358 * 10 9 8 36 36 H 0.97001 * 120.00642 * 179.97438 * 15 14 12 37 37 H 1.08004 * 120.12071 * 179.97438 * 20 11 10 38 38 H 1.07993 * 119.87998 * 179.97438 * 21 20 11 39 39 H 1.09000 * 110.60246 * 118.27813 * 25 23 22 40 40 H 1.09003 * 110.60547 * 241.23700 * 25 23 22 41 41 H 1.09000 * 110.80396 * 241.72935 * 26 25 23 42 42 H 1.08997 * 110.54659 * 118.82587 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7269 -1.6928 -1.1196 6 8 1.7080 -0.2518 -2.4496 7 6 2.2275 -0.9856 -3.5896 8 6 1.7635 -0.3285 -4.8640 9 6 0.5717 -0.7274 -5.4492 10 6 0.1353 -0.1304 -6.6098 11 6 0.9097 0.8803 -7.2089 12 6 0.4748 1.4962 -8.4050 13 1 0.8116 2.4919 -8.6531 14 6 -0.3921 0.8156 -9.2673 15 7 -0.5287 -0.4816 -9.1678 16 14 -1.3546 1.7595 -10.5605 17 1 -0.6130 1.7330 -11.8467 18 1 -2.6867 1.1294 -10.7440 19 1 -1.5291 3.1665 -10.1187 20 6 2.1205 1.2731 -6.6090 21 6 2.5341 0.6668 -5.4449 22 7 2.0184 -0.6906 1.1962 23 6 2.7906 -0.0940 2.1126 24 8 3.1711 1.0562 2.0690 25 6 3.1186 -1.0847 3.2082 26 6 2.3867 -2.3681 2.7661 27 6 1.7291 -1.9702 1.4627 28 8 1.0486 -2.6955 0.7695 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.3170 -0.9845 -3.5566 33 1 1.8641 -2.0128 -3.5569 34 1 -0.0185 -1.5069 -4.9904 35 1 -0.7956 -0.4395 -7.0616 36 1 -1.1299 -0.9534 -9.7652 37 1 2.7229 2.0475 -7.0606 38 1 3.4632 0.9663 -4.9830 39 1 4.1940 -1.2537 3.2632 40 1 2.7344 -0.7372 4.1673 41 1 1.6363 -2.6587 3.5013 42 1 3.0982 -3.1781 2.6052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776214882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:10 Heat of formation + Delta-G solvation = -130.329333 kcal Electronic energy + Delta-G solvation = -27482.027945 eV Core-core repulsion = 23392.252913 eV Total energy + Delta-G solvation = -4089.775032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -42.37520 -40.06206 -38.81882 -37.71506 -36.31734 -35.99083 -34.68314 -33.88076 -31.09126 -30.47517 -29.38358 -27.30244 -26.52347 -25.23305 -23.79693 -22.75954 -21.64436 -21.09905 -20.07322 -19.43796 -17.86141 -17.63598 -17.40529 -17.02695 -16.70612 -16.07318 -15.86462 -15.36299 -14.96139 -14.50008 -14.42148 -14.26124 -14.14071 -13.92234 -13.77605 -13.36880 -13.17337 -12.82693 -12.60252 -12.48648 -12.19540 -12.04273 -12.03928 -11.76456 -11.56884 -11.28499 -11.13352 -10.82846 -10.72363 -10.65060 -10.54605 -10.25688 -10.20626 -9.97334 -9.69834 -9.48522 -9.22687 -7.57777 -7.47394 -6.88514 -4.47774 1.24682 1.88722 2.27568 2.35582 2.52545 2.93945 2.99493 3.01998 3.07191 3.30186 3.71522 3.84599 3.84880 4.03816 4.41770 4.46260 4.61284 4.70826 4.76245 5.01848 5.03683 5.16830 5.20835 5.39264 5.57188 5.60316 5.64646 5.67481 5.88711 6.05077 6.23764 6.30345 6.48968 6.73217 6.86133 6.96162 7.01491 7.16548 7.24774 7.45586 7.50235 7.71742 7.91302 7.94436 7.99420 8.17711 8.52366 8.77082 8.85170 10.05596 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.028973 B = 0.002217 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.188228 B =12625.624460 C =12819.768334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.134 3.866 3 H 0.141 0.859 4 C 0.452 3.548 5 O -0.505 6.505 6 O -0.343 6.343 7 C 0.138 3.862 8 C -0.237 4.237 9 C -0.074 4.074 10 C -0.170 4.170 11 C 0.119 3.881 12 C -0.455 4.455 13 H 0.081 0.919 14 C 0.075 3.925 15 N -0.785 5.785 16 Si 0.910 3.090 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.259 1.259 20 C -0.230 4.230 21 C -0.063 4.063 22 N -0.563 5.563 23 C 0.529 3.471 24 O -0.483 6.483 25 C -0.153 4.153 26 C -0.154 4.154 27 C 0.530 3.470 28 O -0.463 6.463 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.283 0.717 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.397 -2.035 21.802 22.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.031 3.969 3 H 0.158 0.842 4 C 0.293 3.707 5 O -0.394 6.394 6 O -0.259 6.259 7 C 0.066 3.934 8 C -0.238 4.238 9 C -0.092 4.092 10 C -0.190 4.190 11 C 0.117 3.883 12 C -0.484 4.484 13 H 0.099 0.901 14 C -0.144 4.144 15 N -0.410 5.410 16 Si 0.734 3.266 17 H -0.195 1.195 18 H -0.199 1.199 19 H -0.183 1.183 20 C -0.250 4.250 21 C -0.081 4.081 22 N -0.308 5.308 23 C 0.319 3.681 24 O -0.354 6.354 25 C -0.192 4.192 26 C -0.194 4.194 27 C 0.318 3.682 28 O -0.332 6.332 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.137 0.863 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.313 -2.321 21.218 21.470 hybrid contribution -0.244 0.182 -0.815 0.870 sum 2.069 -2.139 20.404 20.619 Atomic orbital electron populations 1.22114 0.90097 1.04929 1.04705 1.20829 0.97703 0.97807 0.80586 0.84182 1.23346 0.78122 0.83113 0.86088 1.90639 1.35741 1.25452 1.87532 1.86681 1.69187 1.56007 1.13982 1.21779 0.97237 0.93873 0.80527 1.18636 1.01164 1.06938 0.97054 1.20541 0.94508 0.98257 0.95943 1.21293 1.01124 1.00970 0.95580 1.17693 0.89202 0.90073 0.91375 1.19676 1.23511 1.02116 1.03114 0.90137 1.25977 0.95390 0.94625 0.98394 1.69822 1.29305 1.08025 1.33843 0.86275 0.79194 0.80966 0.80215 1.19452 1.19903 1.18283 1.20954 0.98462 1.05941 0.99620 1.20384 0.97338 0.94923 0.95468 1.46645 1.47636 1.14647 1.21867 1.20888 0.75857 0.88058 0.83342 1.90799 1.51083 1.16906 1.76616 1.22452 1.04591 0.93290 0.98910 1.22455 1.02036 0.99490 0.95440 1.20764 0.79507 0.80304 0.87577 1.90789 1.35496 1.54159 1.52805 0.90734 0.88577 0.90309 0.92063 0.91820 0.89277 0.86252 0.90611 0.88673 0.89315 0.85943 0.85989 0.86084 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.10 37.16 0.34 -1.44 16 2 C 0.13 1.72 3.22 -69.08 -0.22 1.49 16 3 H 0.14 1.65 7.41 -51.93 -0.38 1.26 16 4 C 0.45 7.56 6.89 36.01 0.25 7.81 16 5 O -0.51 -9.49 14.55 -24.50 -0.36 -9.84 16 6 O -0.34 -6.33 10.11 -39.26 -0.40 -6.73 16 7 C 0.14 2.69 5.58 36.01 0.20 2.89 16 8 C -0.24 -5.27 5.54 -104.33 -0.58 -5.85 16 9 C -0.07 -1.73 9.67 -39.66 -0.38 -2.12 16 10 C -0.17 -4.38 8.70 -38.87 -0.34 -4.72 16 11 C 0.12 3.13 5.57 -106.82 -0.60 2.54 16 12 C -0.46 -11.80 9.05 -37.75 -0.34 -12.14 16 13 H 0.08 2.00 7.91 -52.48 -0.41 1.58 16 14 C 0.08 1.84 5.14 -17.35 -0.09 1.75 16 15 N -0.79 -19.84 10.97 55.55 0.61 -19.23 16 16 Si 0.91 18.13 29.59 -169.99 -5.03 13.10 16 17 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 18 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 19 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 20 C -0.23 -5.60 9.80 -38.87 -0.38 -5.98 16 21 C -0.06 -1.41 9.67 -39.66 -0.38 -1.80 16 22 N -0.56 -6.32 2.28 -109.48 -0.25 -6.57 16 23 C 0.53 5.12 8.08 -11.09 -0.09 5.03 16 24 O -0.48 -6.15 17.23 5.60 0.10 -6.06 16 25 C -0.15 -0.69 7.03 -26.95 -0.19 -0.88 16 26 C -0.15 -0.80 7.03 -26.95 -0.19 -0.99 16 27 C 0.53 5.82 6.70 -11.08 -0.07 5.74 16 28 O -0.46 -6.91 15.12 -10.67 -0.16 -7.07 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 1.07 8.11 -51.93 -0.42 0.65 16 31 H 0.08 0.98 6.64 -51.93 -0.35 0.64 16 32 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 33 H 0.06 1.23 8.07 -51.93 -0.42 0.81 16 34 H 0.09 1.92 8.06 -52.48 -0.42 1.49 16 35 H 0.12 3.14 6.18 -52.49 -0.32 2.82 16 36 H 0.28 6.46 8.30 -40.82 -0.34 6.13 16 37 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 38 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.12 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.12 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 363.51 15.07 5.48 5.48 Total: -1.00 -32.63 363.51 -8.32 -40.95 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.25 Total: 4.63 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -3.07 Total: -8.66 kcal Atomic # 7 Polarization: -26.16 SS G_CDS: 0.36 Total: -25.80 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.82 Total: -29.70 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.63 -8.32 -40.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776214882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.380 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds