Wall clock time and date at job start Tue Mar 31 2020 18:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47249 * 2 1 4 4 C 1.50702 * 109.46962 * 240.00097 * 2 1 3 5 5 O 1.20825 * 119.99666 * 239.99996 * 4 2 1 6 6 O 1.34230 * 119.99888 * 59.99813 * 4 2 1 7 7 C 1.45195 * 116.99783 * 179.97438 * 6 4 2 8 8 C 1.50705 * 109.47203 * 180.02562 * 7 6 4 9 9 C 1.38634 * 119.74826 * 269.72842 * 8 7 6 10 10 C 1.37616 * 120.24955 * 179.72231 * 9 8 7 11 11 C 1.40713 * 119.74457 * 0.56621 * 10 9 8 12 12 C 1.41393 * 120.24727 * 179.68366 * 11 10 9 13 13 H 1.08008 * 120.00063 * 155.31577 * 12 11 10 14 14 C 1.39935 * 120.00013 * 335.31511 * 12 11 10 15 15 N 1.30823 * 120.00240 * 342.23245 * 14 12 11 16 16 Si 1.86800 * 120.00277 * 162.23034 * 14 12 11 17 17 H 1.48497 * 109.47164 * 94.66321 * 16 14 12 18 18 H 1.48503 * 109.47263 * 214.66647 * 16 14 12 19 19 H 1.48500 * 109.47221 * 334.66700 * 16 14 12 20 20 C 1.40721 * 119.50677 * 359.70937 * 11 10 9 21 21 C 1.37614 * 119.75092 * 359.97438 * 20 11 10 22 22 N 1.46500 * 109.47386 * 119.99841 * 2 1 3 23 23 C 1.33865 * 122.76607 * 239.99897 * 22 2 1 24 24 O 1.21232 * 125.39716 * 359.97438 * 23 22 2 25 25 C 1.51314 * 109.20665 * 180.24013 * 23 22 2 26 26 C 1.54215 * 103.55741 * 359.63790 * 25 23 22 27 27 C 1.33877 * 122.75871 * 59.99661 * 22 2 1 28 28 O 1.21228 * 125.39858 * 0.02586 * 27 22 2 29 29 H 1.09003 * 109.46913 * 300.00203 * 1 2 3 30 30 H 1.09001 * 109.47335 * 59.99783 * 1 2 3 31 31 H 1.08996 * 109.47377 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47627 * 300.00071 * 7 6 4 33 33 H 1.09003 * 109.47384 * 60.00511 * 7 6 4 34 34 H 1.08004 * 119.87432 * 359.97438 * 9 8 7 35 35 H 1.07994 * 120.13046 * 180.28358 * 10 9 8 36 36 H 0.97001 * 120.00642 * 179.97438 * 15 14 12 37 37 H 1.08004 * 120.12071 * 179.97438 * 20 11 10 38 38 H 1.07993 * 119.87998 * 179.97438 * 21 20 11 39 39 H 1.09000 * 110.60246 * 118.27813 * 25 23 22 40 40 H 1.09003 * 110.60547 * 241.23700 * 25 23 22 41 41 H 1.09000 * 110.80396 * 241.72935 * 26 25 23 42 42 H 1.08997 * 110.54659 * 118.82587 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7269 -1.6928 -1.1196 6 8 1.7080 -0.2518 -2.4496 7 6 2.2275 -0.9856 -3.5896 8 6 1.7635 -0.3285 -4.8640 9 6 0.5717 -0.7274 -5.4492 10 6 0.1353 -0.1304 -6.6098 11 6 0.9097 0.8803 -7.2089 12 6 0.4748 1.4962 -8.4050 13 1 0.8116 2.4919 -8.6531 14 6 -0.3921 0.8156 -9.2673 15 7 -0.5287 -0.4816 -9.1678 16 14 -1.3546 1.7595 -10.5605 17 1 -0.6130 1.7330 -11.8467 18 1 -2.6867 1.1294 -10.7440 19 1 -1.5291 3.1665 -10.1187 20 6 2.1205 1.2731 -6.6090 21 6 2.5341 0.6668 -5.4449 22 7 2.0184 -0.6906 1.1962 23 6 2.7906 -0.0940 2.1126 24 8 3.1711 1.0562 2.0690 25 6 3.1186 -1.0847 3.2082 26 6 2.3867 -2.3681 2.7661 27 6 1.7291 -1.9702 1.4627 28 8 1.0486 -2.6955 0.7695 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.3170 -0.9845 -3.5566 33 1 1.8641 -2.0128 -3.5569 34 1 -0.0185 -1.5069 -4.9904 35 1 -0.7956 -0.4395 -7.0616 36 1 -1.1299 -0.9534 -9.7652 37 1 2.7229 2.0475 -7.0606 38 1 3.4632 0.9663 -4.9830 39 1 4.1940 -1.2537 3.2632 40 1 2.7344 -0.7372 4.1673 41 1 1.6363 -2.6587 3.5013 42 1 3.0982 -3.1781 2.6052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776214882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:09 Heat of formation + Delta-G solvation = -148.240917 kcal Electronic energy + Delta-G solvation = -27482.804650 eV Core-core repulsion = 23392.252913 eV Total energy + Delta-G solvation = -4090.551737 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.20957 -41.41219 -39.70824 -39.51431 -37.70192 -36.99640 -35.75354 -35.45333 -32.68781 -31.46691 -31.25944 -29.03850 -27.12973 -26.46413 -25.37339 -23.49295 -23.00676 -22.77076 -21.87841 -20.39380 -19.30441 -18.95949 -18.67872 -17.89784 -17.81675 -17.33905 -17.22514 -16.89035 -16.02070 -15.78504 -15.66939 -15.56485 -15.31593 -14.93933 -14.73002 -14.59112 -14.29402 -14.14478 -13.91925 -13.90721 -13.50772 -13.42097 -13.29152 -13.08672 -13.02582 -12.80266 -12.45279 -12.25208 -12.10014 -11.85165 -11.79613 -11.62417 -11.52995 -11.34144 -11.08700 -11.07832 -10.99720 -9.48035 -9.38063 -8.72052 -6.42672 0.49502 0.60444 0.93816 1.06759 1.13466 1.37600 1.44715 1.53179 1.61092 1.97103 2.17908 2.66789 3.15814 3.24283 3.43781 3.61945 3.65136 3.71180 3.76889 3.99263 4.01862 4.05121 4.19161 4.39096 4.42976 4.49673 4.54120 4.64603 4.76075 4.90508 4.92885 4.96797 4.98430 5.08877 5.25420 5.30362 5.35910 5.61206 5.72621 5.83476 6.02185 6.09743 6.27879 6.28272 6.47436 6.60524 6.69780 6.85167 6.93224 8.25059 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.028973 B = 0.002217 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.188228 B =12625.624460 C =12819.768334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.133 3.867 3 H 0.149 0.851 4 C 0.450 3.550 5 O -0.527 6.527 6 O -0.351 6.351 7 C 0.144 3.856 8 C -0.232 4.232 9 C -0.079 4.079 10 C -0.193 4.193 11 C 0.089 3.911 12 C -0.491 4.491 13 H 0.081 0.919 14 C 0.035 3.965 15 N -0.818 5.818 16 Si 0.985 3.015 17 H -0.261 1.261 18 H -0.265 1.265 19 H -0.257 1.257 20 C -0.244 4.244 21 C -0.063 4.063 22 N -0.570 5.570 23 C 0.523 3.477 24 O -0.519 6.519 25 C -0.135 4.135 26 C -0.139 4.139 27 C 0.517 3.483 28 O -0.513 6.513 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.291 0.709 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.145 0.855 40 H 0.158 0.842 41 H 0.154 0.846 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.878 -1.937 24.253 24.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.029 3.971 3 H 0.167 0.833 4 C 0.292 3.708 5 O -0.417 6.417 6 O -0.266 6.266 7 C 0.072 3.928 8 C -0.233 4.233 9 C -0.097 4.097 10 C -0.212 4.212 11 C 0.087 3.913 12 C -0.519 4.519 13 H 0.099 0.901 14 C -0.182 4.182 15 N -0.443 5.443 16 Si 0.805 3.195 17 H -0.186 1.186 18 H -0.190 1.190 19 H -0.181 1.181 20 C -0.264 4.264 21 C -0.082 4.082 22 N -0.315 5.315 23 C 0.315 3.685 24 O -0.393 6.393 25 C -0.174 4.174 26 C -0.178 4.178 27 C 0.309 3.691 28 O -0.386 6.386 29 H 0.120 0.880 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.135 0.865 39 H 0.163 0.837 40 H 0.176 0.824 41 H 0.172 0.828 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.816 -2.228 23.712 23.982 hybrid contribution -0.313 0.098 -1.436 1.473 sum 2.503 -2.129 22.276 22.517 Atomic orbital electron populations 1.22064 0.88872 1.04176 1.05858 1.20889 0.98610 0.97836 0.79754 0.83312 1.24157 0.77411 0.82956 0.86269 1.90617 1.36809 1.26536 1.87695 1.86642 1.69460 1.55956 1.14588 1.21565 0.97727 0.93491 0.80058 1.18907 1.00281 1.06187 0.97953 1.20747 0.95224 0.98370 0.95391 1.21259 1.01113 1.02133 0.96706 1.18052 0.90216 0.90841 0.92235 1.19936 1.25494 1.02563 1.03948 0.90064 1.26854 0.95650 0.95345 1.00310 1.69868 1.29947 1.09467 1.35042 0.85148 0.77756 0.79307 0.77273 1.18567 1.18955 1.18072 1.21170 0.98209 1.06588 1.00410 1.20686 0.98263 0.94391 0.94826 1.46972 1.47989 1.15186 1.21337 1.21872 0.74496 0.88278 0.83816 1.90784 1.52270 1.18742 1.77494 1.22608 1.05936 0.90785 0.98040 1.22601 1.02639 1.00107 0.92494 1.21886 0.78601 0.79619 0.88973 1.90764 1.37822 1.55180 1.54844 0.88002 0.89021 0.91903 0.90993 0.91877 0.87849 0.87734 0.89806 0.87729 0.86488 0.83748 0.82422 0.82786 0.84473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.10 71.98 0.66 -2.63 16 2 C 0.13 3.34 3.22 44.25 0.14 3.48 16 3 H 0.15 3.43 7.41 -2.38 -0.02 3.41 16 4 C 0.45 14.99 6.89 71.24 0.49 15.48 16 5 O -0.53 -19.76 14.55 27.47 0.40 -19.36 16 6 O -0.35 -12.91 10.11 -51.42 -0.52 -13.43 16 7 C 0.14 5.58 5.58 71.24 0.40 5.98 16 8 C -0.23 -10.35 5.54 -19.67 -0.11 -10.46 16 9 C -0.08 -3.78 9.67 22.22 0.21 -3.57 16 10 C -0.19 -10.28 8.70 22.73 0.20 -10.08 16 11 C 0.09 4.84 5.57 -21.29 -0.12 4.72 16 12 C -0.49 -26.24 9.05 23.46 0.21 -26.02 16 13 H 0.08 4.15 7.91 -2.91 -0.02 4.13 16 14 C 0.03 1.72 5.14 85.25 0.44 2.16 16 15 N -0.82 -42.45 10.97 21.82 0.24 -42.21 16 16 Si 0.99 37.46 29.59 68.60 2.03 39.49 16 17 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 18 H -0.27 -9.60 7.11 99.48 0.71 -8.90 16 19 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 20 C -0.24 -12.07 9.80 22.73 0.22 -11.85 16 21 C -0.06 -2.84 9.67 22.22 0.21 -2.63 16 22 N -0.57 -11.99 2.28 -738.13 -1.68 -13.67 16 23 C 0.52 8.91 8.08 87.99 0.71 9.63 16 24 O -0.52 -12.46 17.23 -2.88 -0.05 -12.51 16 25 C -0.13 -0.63 7.03 30.46 0.21 -0.41 16 26 C -0.14 -0.90 7.03 30.46 0.21 -0.69 16 27 C 0.52 10.55 6.70 87.99 0.59 11.14 16 28 O -0.51 -15.23 15.12 12.69 0.19 -15.03 16 29 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.09 2.04 8.11 -2.39 -0.02 2.02 16 31 H 0.06 1.58 6.64 -2.39 -0.02 1.57 16 32 H 0.07 2.63 8.07 -2.39 -0.02 2.61 16 33 H 0.06 2.44 8.07 -2.39 -0.02 2.43 16 34 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 35 H 0.10 5.79 6.18 -2.91 -0.02 5.77 16 36 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 37 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 38 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 39 H 0.14 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.16 -0.27 8.14 -2.39 -0.02 -0.29 16 41 H 0.15 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -74.86 363.51 6.35 -68.51 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 1.05 Total: 23.97 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 4.69 Total: -15.76 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -1.44 Total: -55.88 kcal Atomic # 8 Polarization: -60.36 SS G_CDS: 0.02 Total: -60.34 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 2.03 Total: 39.49 kcal Total: -74.86 6.35 -68.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776214882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.735 kcal (2) G-P(sol) polarization free energy of solvation -74.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds