Wall clock time and date at job start Tue Mar 31 2020 18:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46881 * 2 1 4 4 C 1.50704 * 109.47003 * 119.99358 * 2 1 3 5 5 O 1.20830 * 119.99322 * 120.00342 * 4 2 1 6 6 O 1.34225 * 120.00251 * 300.00396 * 4 2 1 7 7 C 1.45202 * 116.99899 * 180.02562 * 6 4 2 8 8 C 1.50701 * 109.46991 * 179.97438 * 7 6 4 9 9 C 1.38629 * 119.75047 * 269.72384 * 8 7 6 10 10 C 1.37621 * 120.25051 * 179.72034 * 9 8 7 11 11 C 1.40714 * 119.74049 * 0.57590 * 10 9 8 12 12 C 1.41396 * 120.23989 * 179.68122 * 11 10 9 13 13 H 1.08004 * 119.99642 * 204.39810 * 12 11 10 14 14 C 1.39948 * 120.00373 * 24.39836 * 12 11 10 15 15 N 1.30823 * 119.99971 * 17.85664 * 14 12 11 16 16 Si 1.86801 * 119.99883 * 197.85703 * 14 12 11 17 17 H 1.48493 * 109.47362 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.46746 * 120.00056 * 16 14 12 19 19 H 1.48504 * 109.46964 * 239.99631 * 16 14 12 20 20 C 1.40715 * 119.51526 * 359.69584 * 11 10 9 21 21 C 1.37618 * 119.74158 * 0.02562 * 20 11 10 22 22 N 1.46495 * 109.47331 * 239.99726 * 2 1 3 23 23 C 1.33880 * 122.76434 * 119.99706 * 22 2 1 24 24 O 1.21223 * 125.39321 * 359.97438 * 23 22 2 25 25 C 1.51312 * 109.20784 * 180.02562 * 23 22 2 26 26 C 1.54229 * 103.69512 * 359.92304 * 25 23 22 27 27 C 1.33873 * 122.76186 * 299.99915 * 22 2 1 28 28 O 1.21226 * 125.39774 * 0.02562 * 27 22 2 29 29 H 1.08998 * 109.47166 * 299.99848 * 1 2 3 30 30 H 1.09000 * 109.47518 * 60.00119 * 1 2 3 31 31 H 1.09001 * 109.47016 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46774 * 299.99667 * 7 6 4 33 33 H 1.09002 * 109.47350 * 59.99760 * 7 6 4 34 34 H 1.08004 * 119.87701 * 359.97438 * 9 8 7 35 35 H 1.08001 * 120.12582 * 180.27846 * 10 9 8 36 36 H 0.96995 * 120.00114 * 179.97438 * 15 14 12 37 37 H 1.08001 * 120.12602 * 179.97438 * 20 11 10 38 38 H 1.08003 * 119.87176 * 179.97438 * 21 20 11 39 39 H 1.09002 * 110.60418 * 118.52193 * 25 23 22 40 40 H 1.09000 * 110.60356 * 241.32620 * 25 23 22 41 41 H 1.08990 * 110.60663 * 118.59506 * 26 25 23 42 42 H 1.08996 * 110.60478 * 241.56452 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7270 -1.6927 1.1197 6 8 1.7080 -0.2517 2.4496 7 6 2.2276 -0.9855 3.5898 8 6 1.7636 -0.3283 4.8640 9 6 2.5372 0.6627 5.4482 10 6 2.1204 1.2738 6.6088 11 6 0.9099 0.8806 7.2088 12 6 0.4750 1.4966 8.4049 13 1 -0.1978 0.9732 9.0682 14 6 0.9162 2.7845 8.7293 15 7 1.4300 3.5526 7.8033 16 14 0.7715 3.4068 10.4847 17 1 0.1603 2.3536 11.3345 18 1 2.1218 3.7410 11.0042 19 1 -0.0833 4.6210 10.5105 20 6 0.1356 -0.1303 6.6101 21 6 0.5692 -0.7235 5.4464 22 7 2.0183 -0.6906 -1.1961 23 6 2.7905 -0.0940 -2.1127 24 8 3.1702 1.0564 -2.0695 25 6 3.1132 -1.0829 -3.2116 26 6 2.3888 -2.3704 -2.7685 27 6 1.7292 -1.9703 -1.4625 28 8 1.0481 -2.6953 -0.7697 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8642 -2.0126 3.5570 33 1 3.3172 -0.9843 3.5567 34 1 3.4685 0.9592 4.9886 35 1 2.7225 2.0487 7.0597 36 1 1.7355 4.4453 8.0280 37 1 -0.7949 -0.4401 7.0624 38 1 -0.0233 -1.4999 4.9853 39 1 2.7244 -0.7337 -4.1682 40 1 4.1886 -1.2497 -3.2738 41 1 1.6397 -2.6617 -3.5046 42 1 3.1041 -3.1769 -2.6077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776214897.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:17 Heat of formation + Delta-G solvation = -130.388346 kcal Electronic energy + Delta-G solvation = -27516.139016 eV Core-core repulsion = 23426.361425 eV Total energy + Delta-G solvation = -4089.777591 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.34846 -40.04568 -38.80187 -37.71185 -36.30352 -35.97411 -34.66051 -33.88144 -31.08438 -30.46642 -29.38238 -27.29930 -26.49429 -25.21796 -23.79418 -22.74460 -21.63059 -21.09830 -20.07063 -19.42325 -17.84538 -17.61885 -17.40821 -17.00672 -16.68999 -16.04281 -15.89197 -15.34710 -14.93321 -14.48080 -14.42356 -14.25979 -14.13612 -13.92490 -13.75169 -13.35334 -13.14750 -12.85066 -12.58056 -12.43944 -12.16443 -12.05493 -11.99502 -11.75740 -11.74968 -11.20153 -11.00763 -10.89386 -10.79502 -10.62039 -10.44964 -10.24157 -10.21212 -9.96978 -9.69407 -9.48760 -9.23935 -7.58114 -7.46906 -6.88274 -4.47969 1.26258 1.90252 2.29096 2.36707 2.53022 2.93813 2.99506 3.02450 3.07430 3.30884 3.72623 3.84670 3.85552 4.04949 4.42741 4.46229 4.63140 4.73422 4.78414 5.03012 5.05666 5.17914 5.21603 5.41291 5.58293 5.61530 5.64570 5.67174 5.90466 6.04636 6.23935 6.29962 6.50600 6.74631 6.86004 6.96099 7.03134 7.16789 7.24963 7.46943 7.50273 7.72027 7.92898 7.94529 7.99537 8.17688 8.52518 8.77065 8.85179 10.05412 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.027130 B = 0.002279 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.820407 B =12281.116070 C =12711.762669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.134 3.866 3 H 0.141 0.859 4 C 0.453 3.547 5 O -0.506 6.506 6 O -0.342 6.342 7 C 0.138 3.862 8 C -0.237 4.237 9 C -0.075 4.075 10 C -0.171 4.171 11 C 0.118 3.882 12 C -0.455 4.455 13 H 0.081 0.919 14 C 0.074 3.926 15 N -0.784 5.784 16 Si 0.910 3.090 17 H -0.259 1.259 18 H -0.271 1.271 19 H -0.273 1.273 20 C -0.230 4.230 21 C -0.062 4.062 22 N -0.563 5.563 23 C 0.529 3.471 24 O -0.482 6.482 25 C -0.154 4.154 26 C -0.153 4.153 27 C 0.530 3.470 28 O -0.464 6.464 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.120 0.880 36 H 0.283 0.717 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.678 -6.161 -19.901 20.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.030 3.970 3 H 0.159 0.841 4 C 0.294 3.706 5 O -0.395 6.395 6 O -0.258 6.258 7 C 0.066 3.934 8 C -0.238 4.238 9 C -0.093 4.093 10 C -0.190 4.190 11 C 0.116 3.884 12 C -0.483 4.483 13 H 0.099 0.901 14 C -0.145 4.145 15 N -0.408 5.408 16 Si 0.734 3.266 17 H -0.183 1.183 18 H -0.196 1.196 19 H -0.199 1.199 20 C -0.250 4.250 21 C -0.080 4.080 22 N -0.308 5.308 23 C 0.318 3.682 24 O -0.353 6.353 25 C -0.193 4.193 26 C -0.193 4.193 27 C 0.318 3.682 28 O -0.333 6.333 29 H 0.114 0.886 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.138 0.862 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.798 -5.988 -19.475 20.454 hybrid contribution 0.102 0.368 0.841 0.923 sum 1.900 -5.620 -18.635 19.556 Atomic orbital electron populations 1.22112 0.90096 1.04874 1.04747 1.20833 0.97709 0.97849 0.80563 0.84142 1.23350 0.78092 0.83072 0.86108 1.90636 1.35785 1.25502 1.87552 1.86701 1.69120 1.55976 1.13960 1.21790 0.97323 0.93735 0.80547 1.18651 1.00895 1.07168 0.97131 1.20539 0.97639 0.94947 0.96215 1.21294 0.97536 1.02699 0.97463 1.17697 0.89910 0.89489 0.91332 1.19717 1.24821 0.99177 1.04619 0.90096 1.25985 0.92744 0.96655 0.99081 1.69833 1.29125 1.07989 1.33880 0.86230 0.78994 0.79230 0.82149 1.18275 1.19572 1.19859 1.20966 1.00741 1.04639 0.98608 1.20397 0.94223 0.97813 0.95616 1.46637 1.47598 1.14632 1.21898 1.20886 0.75869 0.88052 0.83359 1.90802 1.51002 1.16843 1.76653 1.22454 1.04686 0.93332 0.98849 1.22516 1.02024 0.99386 0.95360 1.20851 0.79476 0.80299 0.87552 1.90781 1.35527 1.54208 1.52828 0.88563 0.90720 0.90339 0.91921 0.92025 0.89344 0.86209 0.90647 0.88672 0.89261 0.85988 0.85984 0.86122 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.10 37.16 0.34 -1.49 16 2 C 0.13 1.76 3.22 -69.08 -0.22 1.54 16 3 H 0.14 1.73 7.41 -51.93 -0.38 1.35 16 4 C 0.45 7.70 6.89 36.01 0.25 7.94 16 5 O -0.51 -9.56 14.55 -24.50 -0.36 -9.92 16 6 O -0.34 -6.45 10.11 -39.24 -0.40 -6.85 16 7 C 0.14 2.70 5.58 36.01 0.20 2.90 16 8 C -0.24 -5.29 5.54 -104.33 -0.58 -5.86 16 9 C -0.07 -1.75 9.67 -39.66 -0.38 -2.14 16 10 C -0.17 -4.38 8.70 -38.87 -0.34 -4.72 16 11 C 0.12 3.11 5.58 -106.83 -0.60 2.51 16 12 C -0.45 -11.77 9.05 -37.74 -0.34 -12.11 16 13 H 0.08 2.01 7.91 -52.48 -0.41 1.59 16 14 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 15 N -0.78 -19.79 10.95 55.55 0.61 -19.18 16 16 Si 0.91 18.13 29.60 -169.99 -5.03 13.10 16 17 H -0.26 -5.12 7.11 56.52 0.40 -4.71 16 18 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 19 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 20 C -0.23 -5.59 9.80 -38.87 -0.38 -5.97 16 21 C -0.06 -1.40 9.67 -39.66 -0.38 -1.78 16 22 N -0.56 -6.46 2.28 -109.34 -0.25 -6.71 16 23 C 0.53 5.27 8.08 -11.09 -0.09 5.18 16 24 O -0.48 -6.33 17.23 5.61 0.10 -6.23 16 25 C -0.15 -0.73 7.02 -26.94 -0.19 -0.91 16 26 C -0.15 -0.81 7.06 -26.76 -0.19 -1.00 16 27 C 0.53 5.87 6.71 -10.90 -0.07 5.80 16 28 O -0.46 -6.92 15.13 -10.64 -0.16 -7.08 16 29 H 0.10 1.12 8.11 -51.93 -0.42 0.69 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.99 6.64 -51.93 -0.35 0.64 16 32 H 0.06 1.19 8.07 -51.93 -0.42 0.77 16 33 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 34 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 35 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 36 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 37 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 38 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 39 H 0.12 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 363.51 15.07 5.48 5.48 Total: -1.00 -32.65 363.51 -8.32 -40.97 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.24 Total: 4.80 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -3.07 Total: -8.38 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: 0.36 Total: -25.89 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.82 Total: -30.08 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.65 -8.32 -40.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776214897.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.414 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds