Wall clock time and date at job start Tue Mar 31 2020 17:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42906 * 109.46854 * 2 1 4 4 C 1.52996 * 109.47304 * 120.00174 * 2 1 3 5 5 N 1.46507 * 109.47103 * 305.00015 * 4 2 1 6 6 C 1.34773 * 120.00266 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99503 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.00092 * 180.02562 * 6 5 4 9 9 C 1.50707 * 109.47262 * 179.97438 * 8 6 5 10 10 C 1.37643 * 120.12639 * 265.30991 * 9 8 6 11 11 C 1.38615 * 120.24281 * 180.31829 * 10 9 8 12 12 C 1.38658 * 120.50051 * 359.66907 * 11 10 9 13 13 C 1.37593 * 120.25264 * 0.02562 * 12 11 10 14 14 C 1.40688 * 120.12508 * 84.99750 * 9 8 6 15 15 C 1.41401 * 120.24844 * 359.97438 * 14 9 8 16 16 H 1.07999 * 119.99289 * 334.28466 * 15 14 9 17 17 C 1.39937 * 120.00394 * 154.28925 * 15 14 9 18 18 N 1.30829 * 120.00181 * 334.60180 * 17 15 14 19 19 Si 1.86801 * 120.00083 * 154.60226 * 17 15 14 20 20 H 1.48505 * 109.47160 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.47100 * 300.00105 * 19 17 15 22 22 H 1.48502 * 109.47051 * 60.00179 * 19 17 15 23 23 C 1.53002 * 109.47360 * 240.00400 * 2 1 3 24 24 F 1.39901 * 109.46825 * 299.99756 * 23 2 1 25 25 F 1.39893 * 109.47125 * 59.99353 * 23 2 1 26 26 F 1.39894 * 109.47187 * 179.97438 * 23 2 1 27 27 H 1.08997 * 109.47340 * 299.99744 * 1 2 3 28 28 H 1.08995 * 109.47092 * 60.00218 * 1 2 3 29 29 H 1.09000 * 109.46741 * 180.02562 * 1 2 3 30 30 H 0.96704 * 113.99833 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47212 * 185.00437 * 4 2 1 32 32 H 1.08991 * 109.47261 * 65.00270 * 4 2 1 33 33 H 0.97000 * 119.99705 * 0.02562 * 5 4 2 34 34 H 1.09001 * 109.46892 * 59.99768 * 8 6 5 35 35 H 1.08991 * 109.47294 * 299.99778 * 8 6 5 36 36 H 1.07998 * 119.87840 * 0.02562 * 10 9 8 37 37 H 1.07996 * 119.74749 * 179.68975 * 11 10 9 38 38 H 1.08000 * 119.87393 * 180.02562 * 12 11 10 39 39 H 1.07996 * 120.12941 * 180.02562 * 13 12 11 40 40 H 0.96998 * 119.99709 * 354.17607 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.4559 -0.1037 2.4424 6 6 1.7648 -0.5768 3.6660 7 8 2.5260 -1.5142 3.7792 8 6 1.1635 0.0581 4.8932 9 6 1.6659 -0.6522 6.1238 10 6 0.9275 -1.6699 6.6839 11 6 1.3842 -2.3204 7.8195 12 6 2.5907 -1.9598 8.4000 13 6 3.3483 -0.9496 7.8535 14 6 2.8946 -0.2821 6.7005 15 6 3.6651 0.7570 6.1296 16 1 3.5666 0.9877 5.0792 17 6 4.5554 1.4864 6.9257 18 7 4.3508 1.5850 8.2141 19 14 6.0359 2.3194 6.1487 20 1 6.8157 3.0229 7.1986 21 1 6.8929 1.2974 5.4960 22 1 5.5755 3.3008 5.1337 23 6 2.0401 -0.7212 -1.2493 24 9 1.5738 -2.0402 -1.2493 25 9 1.5737 -0.0617 -2.3915 26 9 3.4390 -0.7206 -1.2495 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 2.9703 1.4237 -0.0004 31 1 3.1263 -0.6443 1.2951 32 1 1.7518 -1.7715 1.2055 33 1 0.8468 0.6458 2.3517 34 1 0.0772 -0.0197 4.8473 35 1 1.4510 1.1085 4.9368 36 1 -0.0134 -1.9594 6.2397 37 1 0.7960 -3.1144 8.2553 38 1 2.9370 -2.4737 9.2845 39 1 4.2879 -0.6706 8.3070 40 1 3.5393 1.2253 8.6052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777430051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:57 Heat of formation + Delta-G solvation = -233.107553 kcal Electronic energy + Delta-G solvation = -28865.054400 eV Core-core repulsion = 24228.965830 eV Total energy + Delta-G solvation = -4636.088570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.50232 -48.00540 -47.95523 -39.73914 -38.43310 -37.40043 -34.40428 -33.84756 -32.18840 -31.58198 -29.21529 -27.85389 -26.98141 -25.59883 -24.73662 -21.58400 -20.94578 -20.80160 -19.72834 -19.06278 -18.79644 -18.63461 -17.77701 -17.03929 -15.90655 -15.82826 -15.35583 -14.99579 -14.82968 -14.80003 -14.54850 -14.39191 -14.15773 -14.13682 -14.07447 -13.95615 -13.91648 -13.63093 -13.16523 -12.94004 -12.77684 -12.40566 -12.27819 -12.01312 -11.75637 -11.65052 -11.23387 -11.15664 -10.88573 -10.81191 -10.46966 -10.39171 -9.65679 -9.38972 -9.33554 -8.96939 -8.92948 -7.55771 -7.50600 -7.12229 -4.42200 2.15643 2.73119 2.85245 3.08537 3.15332 3.20134 3.25957 3.28879 3.37090 3.47424 3.71543 3.82008 4.02367 4.17714 4.34775 4.59435 5.08421 5.15217 5.25897 5.31730 5.47452 5.59322 5.67856 5.89590 6.02185 6.16893 6.31281 6.36030 6.51026 6.68407 6.82985 7.00364 7.21015 7.41884 7.64791 7.78021 7.82982 7.86279 7.95813 8.21119 8.34837 8.70348 8.78862 8.92920 10.07536 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.013839 B = 0.003521 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.836417 B = 7949.801986 C = 9247.352381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.088 3.912 3 O -0.525 6.525 4 C 0.095 3.905 5 N -0.736 5.736 6 C 0.516 3.484 7 O -0.517 6.517 8 C -0.068 4.068 9 C -0.187 4.187 10 C -0.068 4.068 11 C -0.253 4.253 12 C -0.086 4.086 13 C -0.216 4.216 14 C 0.117 3.883 15 C -0.517 4.517 16 H 0.072 0.928 17 C 0.041 3.959 18 N -0.798 5.798 19 Si 1.060 2.940 20 H -0.274 1.274 21 H -0.275 1.275 22 H -0.277 1.277 23 C 0.429 3.571 24 F -0.175 7.175 25 F -0.174 7.174 26 F -0.180 7.180 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.392 0.608 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.401 0.599 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.640 0.698 -16.472 17.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.044 3.956 3 O -0.332 6.332 4 C -0.030 4.030 5 N -0.393 5.393 6 C 0.304 3.696 7 O -0.390 6.390 8 C -0.107 4.107 9 C -0.189 4.189 10 C -0.086 4.086 11 C -0.272 4.272 12 C -0.104 4.104 13 C -0.235 4.235 14 C 0.114 3.886 15 C -0.545 4.545 16 H 0.090 0.910 17 C -0.181 4.181 18 N -0.421 5.421 19 Si 0.884 3.116 20 H -0.199 1.199 21 H -0.201 1.201 22 H -0.202 1.202 23 C 0.373 3.627 24 F -0.157 7.157 25 F -0.155 7.155 26 F -0.161 7.161 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.242 0.758 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.237 0.763 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.122 0.878 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.330 1.015 -15.982 16.878 hybrid contribution -0.858 -0.953 -0.756 1.489 sum -6.187 0.062 -16.738 17.845 Atomic orbital electron populations 1.21881 0.88590 1.04654 1.05302 1.22610 0.98663 0.84291 0.90034 1.86676 1.28536 1.21861 1.96113 1.21782 0.99650 0.97894 0.83714 1.45991 1.50968 1.37569 1.04808 1.21316 0.81118 0.83439 0.83762 1.90703 1.34321 1.27803 1.86167 1.20230 0.99019 1.01139 0.90332 1.18992 0.97114 1.03219 0.99549 1.20357 0.97529 0.95194 0.95564 1.20262 0.99847 1.05839 1.01292 1.20611 0.94995 0.96864 0.97966 1.21143 1.00611 1.00337 1.01416 1.17390 0.89449 0.91168 0.90623 1.20435 1.20644 1.15279 0.98140 0.91006 1.26921 1.01418 0.95342 0.94442 1.70452 1.27150 1.31974 1.12552 0.83717 0.75146 0.76689 0.76087 1.19862 1.20072 1.20215 1.21368 0.75912 0.78234 0.87139 1.93207 1.88336 1.37367 1.96751 1.93201 1.88297 1.80603 1.53397 1.93205 1.29801 1.96313 1.96811 0.89179 0.90058 0.89309 0.75825 0.90065 0.89625 0.76347 0.90475 0.88472 0.89595 0.89449 0.89380 0.87755 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.37 37.16 0.31 -0.80 16 2 C 0.09 0.80 0.58 -90.62 -0.05 0.75 16 3 O -0.52 -4.71 12.87 -35.23 -0.45 -5.16 16 4 C 0.09 1.12 4.57 -4.04 -0.02 1.10 16 5 N -0.74 -9.74 5.19 -60.30 -0.31 -10.06 16 6 C 0.52 9.54 7.46 -10.99 -0.08 9.46 16 7 O -0.52 -12.01 16.03 5.56 0.09 -11.92 16 8 C -0.07 -1.27 5.18 -29.03 -0.15 -1.42 16 9 C -0.19 -4.39 4.43 -103.91 -0.46 -4.85 16 10 C -0.07 -1.53 9.66 -39.66 -0.38 -1.92 16 11 C -0.25 -5.77 10.05 -39.29 -0.39 -6.17 16 12 C -0.09 -2.05 10.02 -39.66 -0.40 -2.45 16 13 C -0.22 -5.64 7.95 -38.87 -0.31 -5.95 16 14 C 0.12 3.05 5.30 -106.82 -0.57 2.48 16 15 C -0.52 -13.40 8.08 -37.74 -0.30 -13.70 16 16 H 0.07 1.82 6.73 -52.49 -0.35 1.47 16 17 C 0.04 1.02 4.94 -17.34 -0.09 0.93 16 18 N -0.80 -20.95 12.31 55.55 0.68 -20.27 16 19 Si 1.06 21.67 30.00 -169.99 -5.10 16.57 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 23 C 0.43 4.19 2.38 37.16 0.09 4.28 16 24 F -0.18 -1.81 16.19 2.25 0.04 -1.77 16 25 F -0.17 -1.75 16.74 2.25 0.04 -1.71 16 26 F -0.18 -1.87 16.51 2.25 0.04 -1.84 16 27 H 0.09 0.62 6.57 -51.93 -0.34 0.28 16 28 H 0.08 0.57 7.80 -51.93 -0.41 0.16 16 29 H 0.09 0.61 7.80 -51.93 -0.41 0.21 16 30 H 0.39 2.65 8.69 45.56 0.40 3.05 16 31 H 0.08 1.05 7.94 -51.93 -0.41 0.63 16 32 H 0.09 1.06 7.66 -51.93 -0.40 0.66 16 33 H 0.40 4.23 6.99 -40.82 -0.29 3.95 16 34 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 35 H 0.10 1.81 7.06 -51.93 -0.37 1.44 16 36 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 37 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 38 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.10 2.81 6.49 -52.49 -0.34 2.47 16 40 H 0.30 8.05 6.68 -40.82 -0.27 7.78 16 LS Contribution 348.80 15.07 5.26 5.26 Total: -1.00 -31.25 348.80 -6.20 -37.45 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -3.67 Total: 11.69 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -2.81 Total: -18.24 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 0.37 Total: -30.32 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.36 Total: -17.08 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.11 Total: -5.32 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.10 Total: 16.57 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.25 -6.20 -37.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777430051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.656 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds