Wall clock time and date at job start Tue Mar 31 2020 17:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42906 * 109.46854 * 2 1 4 4 C 1.52996 * 109.47304 * 120.00174 * 2 1 3 5 5 N 1.46507 * 109.47103 * 305.00015 * 4 2 1 6 6 C 1.34773 * 120.00266 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99503 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.00092 * 180.02562 * 6 5 4 9 9 C 1.50707 * 109.47262 * 179.97438 * 8 6 5 10 10 C 1.37643 * 120.12639 * 265.30991 * 9 8 6 11 11 C 1.38615 * 120.24281 * 180.31829 * 10 9 8 12 12 C 1.38658 * 120.50051 * 359.66907 * 11 10 9 13 13 C 1.37593 * 120.25264 * 0.02562 * 12 11 10 14 14 C 1.40688 * 120.12508 * 84.99750 * 9 8 6 15 15 C 1.41401 * 120.24844 * 359.97438 * 14 9 8 16 16 H 1.07999 * 119.99289 * 334.28466 * 15 14 9 17 17 C 1.39937 * 120.00394 * 154.28925 * 15 14 9 18 18 N 1.30829 * 120.00181 * 334.60180 * 17 15 14 19 19 Si 1.86801 * 120.00083 * 154.60226 * 17 15 14 20 20 H 1.48505 * 109.47160 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.47100 * 300.00105 * 19 17 15 22 22 H 1.48502 * 109.47051 * 60.00179 * 19 17 15 23 23 C 1.53002 * 109.47360 * 240.00400 * 2 1 3 24 24 F 1.39901 * 109.46825 * 299.99756 * 23 2 1 25 25 F 1.39893 * 109.47125 * 59.99353 * 23 2 1 26 26 F 1.39894 * 109.47187 * 179.97438 * 23 2 1 27 27 H 1.08997 * 109.47340 * 299.99744 * 1 2 3 28 28 H 1.08995 * 109.47092 * 60.00218 * 1 2 3 29 29 H 1.09000 * 109.46741 * 180.02562 * 1 2 3 30 30 H 0.96704 * 113.99833 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47212 * 185.00437 * 4 2 1 32 32 H 1.08991 * 109.47261 * 65.00270 * 4 2 1 33 33 H 0.97000 * 119.99705 * 0.02562 * 5 4 2 34 34 H 1.09001 * 109.46892 * 59.99768 * 8 6 5 35 35 H 1.08991 * 109.47294 * 299.99778 * 8 6 5 36 36 H 1.07998 * 119.87840 * 0.02562 * 10 9 8 37 37 H 1.07996 * 119.74749 * 179.68975 * 11 10 9 38 38 H 1.08000 * 119.87393 * 180.02562 * 12 11 10 39 39 H 1.07996 * 120.12941 * 180.02562 * 13 12 11 40 40 H 0.96998 * 119.99709 * 354.17607 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.4559 -0.1037 2.4424 6 6 1.7648 -0.5768 3.6660 7 8 2.5260 -1.5142 3.7792 8 6 1.1635 0.0581 4.8932 9 6 1.6659 -0.6522 6.1238 10 6 0.9275 -1.6699 6.6839 11 6 1.3842 -2.3204 7.8195 12 6 2.5907 -1.9598 8.4000 13 6 3.3483 -0.9496 7.8535 14 6 2.8946 -0.2821 6.7005 15 6 3.6651 0.7570 6.1296 16 1 3.5666 0.9877 5.0792 17 6 4.5554 1.4864 6.9257 18 7 4.3508 1.5850 8.2141 19 14 6.0359 2.3194 6.1487 20 1 6.8157 3.0229 7.1986 21 1 6.8929 1.2974 5.4960 22 1 5.5755 3.3008 5.1337 23 6 2.0401 -0.7212 -1.2493 24 9 1.5738 -2.0402 -1.2493 25 9 1.5737 -0.0617 -2.3915 26 9 3.4390 -0.7206 -1.2495 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 2.9703 1.4237 -0.0004 31 1 3.1263 -0.6443 1.2951 32 1 1.7518 -1.7715 1.2055 33 1 0.8468 0.6458 2.3517 34 1 0.0772 -0.0197 4.8473 35 1 1.4510 1.1085 4.9368 36 1 -0.0134 -1.9594 6.2397 37 1 0.7960 -3.1144 8.2553 38 1 2.9370 -2.4737 9.2845 39 1 4.2879 -0.6706 8.3070 40 1 3.5393 1.2253 8.6052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777430051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:56 Heat of formation + Delta-G solvation = -254.272037 kcal Electronic energy + Delta-G solvation = -28865.972161 eV Core-core repulsion = 24228.965830 eV Total energy + Delta-G solvation = -4637.006331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -51.29781 -48.81137 -48.74798 -41.04765 -39.69162 -38.90135 -35.72493 -35.52267 -33.62820 -32.72303 -31.08543 -29.14400 -27.94415 -27.03281 -26.30022 -22.81569 -22.61685 -22.06434 -21.27576 -19.89666 -19.69440 -19.55178 -19.41686 -18.23336 -17.20507 -16.94020 -16.67018 -16.34601 -16.31182 -15.83485 -15.61964 -15.60650 -15.38334 -15.19410 -15.10171 -14.94543 -14.89849 -14.77990 -14.46301 -14.18068 -13.88055 -13.79636 -13.54065 -13.48207 -13.11651 -12.96997 -12.71121 -12.58351 -12.39345 -12.22744 -11.98027 -11.64610 -11.46561 -11.19967 -10.88856 -10.81329 -10.17812 -9.42588 -9.41101 -9.03727 -6.37702 0.91369 1.00877 1.36627 1.48428 1.63551 1.75490 1.77160 2.12049 2.32727 2.50710 2.64544 2.72663 2.78211 3.06390 3.38386 3.58128 3.60771 4.05931 4.28697 4.29886 4.34420 4.49158 4.53413 4.59645 4.61285 4.65167 4.74763 4.99863 5.03469 5.09844 5.33179 5.36189 5.52041 5.81694 5.86230 6.00778 6.07383 6.21037 6.31377 6.46726 6.55855 6.88205 7.04592 7.34501 8.10723 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.013839 B = 0.003521 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.836417 B = 7949.801986 C = 9247.352381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.102 3.898 3 O -0.528 6.528 4 C 0.093 3.907 5 N -0.712 5.712 6 C 0.520 3.480 7 O -0.572 6.572 8 C -0.068 4.068 9 C -0.191 4.191 10 C -0.079 4.079 11 C -0.251 4.251 12 C -0.098 4.098 13 C -0.246 4.246 14 C 0.086 3.914 15 C -0.541 4.541 16 H 0.071 0.929 17 C 0.005 3.995 18 N -0.821 5.821 19 Si 1.106 2.894 20 H -0.272 1.272 21 H -0.276 1.276 22 H -0.250 1.250 23 C 0.430 3.570 24 F -0.179 7.179 25 F -0.173 7.173 26 F -0.185 7.185 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.401 0.599 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.417 0.583 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.107 0.893 39 H 0.082 0.918 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.276 1.059 -18.223 20.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.058 3.942 3 O -0.337 6.337 4 C -0.032 4.032 5 N -0.368 5.368 6 C 0.308 3.692 7 O -0.450 6.450 8 C -0.108 4.108 9 C -0.192 4.192 10 C -0.097 4.097 11 C -0.270 4.270 12 C -0.116 4.116 13 C -0.266 4.266 14 C 0.083 3.917 15 C -0.569 4.569 16 H 0.089 0.911 17 C -0.211 4.211 18 N -0.444 5.444 19 Si 0.924 3.076 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.174 1.174 23 C 0.375 3.625 24 F -0.160 7.160 25 F -0.155 7.155 26 F -0.167 7.167 27 H 0.118 0.882 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.252 0.748 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.256 0.744 34 H 0.136 0.864 35 H 0.115 0.885 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.125 0.875 39 H 0.100 0.900 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.012 1.413 -17.770 19.155 hybrid contribution -0.471 -1.174 -0.245 1.288 sum -7.482 0.239 -18.015 19.509 Atomic orbital electron populations 1.21993 0.87012 1.05507 1.06246 1.22474 0.99646 0.83895 0.88220 1.86672 1.29584 1.21467 1.95927 1.21838 0.99067 0.98125 0.84152 1.45653 1.50090 1.37207 1.03846 1.21140 0.80373 0.82702 0.85007 1.90690 1.36841 1.30373 1.87064 1.20267 1.01364 1.00361 0.88769 1.19515 0.96034 1.03064 1.00606 1.20821 0.98821 0.94644 0.95450 1.20715 0.99290 1.05967 1.01058 1.20897 0.95501 0.96477 0.98753 1.21150 1.00678 1.02080 1.02670 1.17782 0.90921 0.91787 0.91182 1.20551 1.22147 1.16085 0.98114 0.91112 1.28194 1.03389 0.95309 0.94242 1.70554 1.26798 1.33689 1.13401 0.83149 0.72208 0.76337 0.75914 1.19653 1.20120 1.17434 1.21443 0.75637 0.78106 0.87356 1.93203 1.88338 1.37687 1.96776 1.93202 1.88265 1.80577 1.53416 1.93199 1.30317 1.96323 1.96843 0.88230 0.89146 0.88567 0.74752 0.91220 0.89940 0.74396 0.86413 0.88483 0.86065 0.86414 0.87461 0.90005 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.37 71.98 0.60 -1.22 16 2 C 0.10 1.63 0.58 -10.79 -0.01 1.63 16 3 O -0.53 -8.19 12.87 -148.98 -1.92 -10.11 16 4 C 0.09 2.06 4.57 86.38 0.40 2.45 16 5 N -0.71 -17.27 5.19 -463.07 -2.40 -19.68 16 6 C 0.52 18.47 7.46 87.66 0.65 19.12 16 7 O -0.57 -26.48 16.03 -3.04 -0.05 -26.53 16 8 C -0.07 -2.43 5.18 29.10 0.15 -2.28 16 9 C -0.19 -8.80 4.43 -19.40 -0.09 -8.88 16 10 C -0.08 -3.41 9.66 22.22 0.21 -3.19 16 11 C -0.25 -11.03 10.05 22.46 0.23 -10.80 16 12 C -0.10 -4.70 10.02 22.22 0.22 -4.47 16 13 C -0.25 -13.33 7.95 22.73 0.18 -13.14 16 14 C 0.09 4.59 5.30 -21.29 -0.11 4.48 16 15 C -0.54 -28.66 8.08 23.46 0.19 -28.47 16 16 H 0.07 3.64 6.73 -2.91 -0.02 3.62 16 17 C 0.00 0.25 4.94 85.25 0.42 0.67 16 18 N -0.82 -44.71 12.31 21.82 0.27 -44.44 16 19 Si 1.11 44.01 30.00 68.60 2.06 46.07 16 20 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 21 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 22 H -0.25 -8.83 7.11 99.48 0.71 -8.13 16 23 C 0.43 7.65 2.38 71.98 0.17 7.82 16 24 F -0.18 -3.41 16.19 44.97 0.73 -2.68 16 25 F -0.17 -3.14 16.74 44.97 0.75 -2.39 16 26 F -0.19 -3.64 16.51 44.97 0.74 -2.90 16 27 H 0.10 1.01 6.57 -2.39 -0.02 1.00 16 28 H 0.09 0.98 7.80 -2.39 -0.02 0.96 16 29 H 0.10 1.04 7.80 -2.39 -0.02 1.02 16 30 H 0.40 4.62 8.69 -74.05 -0.64 3.98 16 31 H 0.07 1.74 7.94 -2.39 -0.02 1.72 16 32 H 0.08 1.93 7.66 -2.39 -0.02 1.91 16 33 H 0.42 7.48 6.99 -92.71 -0.65 6.84 16 34 H 0.12 3.18 8.05 -2.39 -0.02 3.16 16 35 H 0.10 3.48 7.06 -2.39 -0.02 3.46 16 36 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 37 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 38 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 39 H 0.08 4.67 6.49 -2.91 -0.02 4.65 16 40 H 0.28 16.07 6.68 -92.71 -0.62 15.45 16 Total: -1.00 -69.64 348.80 3.38 -66.26 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: -0.03 Total: 32.70 kcal Atomic # 6 Polarization: -39.53 SS G_CDS: 3.22 Total: -36.30 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: -2.13 Total: -64.12 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -1.97 Total: -36.64 kcal Atomic # 9 Polarization: -10.19 SS G_CDS: 2.22 Total: -7.97 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.06 Total: 46.07 kcal Total: -69.64 3.38 -66.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777430051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.015 kcal (2) G-P(sol) polarization free energy of solvation -69.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -257.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -254.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds