Wall clock time and date at job start Tue Mar 31 2020 17:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.46938 * 2 1 4 4 C 1.53001 * 109.46965 * 239.99939 * 2 1 3 5 5 N 1.46500 * 109.47172 * 60.00101 * 4 2 1 6 6 C 1.34776 * 120.00273 * 180.27181 * 5 4 2 7 7 O 1.21287 * 119.99757 * 359.72886 * 6 5 4 8 8 C 1.50698 * 120.00208 * 179.72681 * 6 5 4 9 9 C 1.50703 * 109.47228 * 180.02562 * 8 6 5 10 10 C 1.37646 * 120.12241 * 265.00224 * 9 8 6 11 11 C 1.38610 * 120.24336 * 179.97438 * 10 9 8 12 12 C 1.38658 * 120.50545 * 0.02562 * 11 10 9 13 13 C 1.37596 * 120.24902 * 0.02562 * 12 11 10 14 14 C 1.40694 * 120.12949 * 84.72048 * 9 8 6 15 15 C 1.41391 * 120.24727 * 359.97438 * 14 9 8 16 16 H 1.08003 * 119.99814 * 333.90055 * 15 14 9 17 17 C 1.39939 * 120.00174 * 153.89461 * 15 14 9 18 18 N 1.30820 * 120.00325 * 343.71618 * 17 15 14 19 19 Si 1.86802 * 120.00107 * 163.70716 * 17 15 14 20 20 H 1.48505 * 109.47075 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47002 * 120.00463 * 19 17 15 22 22 H 1.48496 * 109.47737 * 240.00530 * 19 17 15 23 23 C 1.53001 * 109.47076 * 119.99977 * 2 1 3 24 24 F 1.39901 * 109.47092 * 179.97438 * 23 2 1 25 25 F 1.39898 * 109.47122 * 300.00203 * 23 2 1 26 26 F 1.39906 * 109.46870 * 59.99958 * 23 2 1 27 27 H 1.09003 * 109.47206 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47052 * 300.00109 * 1 2 3 29 29 H 1.09004 * 109.47357 * 60.00027 * 1 2 3 30 30 H 0.96702 * 113.99533 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.47557 * 300.00051 * 4 2 1 32 32 H 1.08998 * 109.46871 * 179.97438 * 4 2 1 33 33 H 0.97006 * 120.00147 * 0.02562 * 5 4 2 34 34 H 1.08997 * 109.46831 * 299.99942 * 8 6 5 35 35 H 1.08992 * 109.47423 * 60.00183 * 8 6 5 36 36 H 1.08000 * 119.87783 * 359.97438 * 10 9 8 37 37 H 1.08009 * 119.74523 * 179.97438 * 11 10 9 38 38 H 1.07997 * 119.87334 * 179.97438 * 12 11 10 39 39 H 1.07999 * 120.13081 * 179.97438 * 13 12 11 40 40 H 0.96999 * 120.00801 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.5517 -0.0307 -2.4454 6 6 1.8727 -0.4943 -3.6695 7 8 2.5699 -1.4804 -3.7808 8 6 1.3652 0.2125 -4.8999 9 6 1.8626 -0.5014 -6.1304 10 6 3.0097 -0.0748 -6.7603 11 6 3.4697 -0.7299 -7.8919 12 6 2.7816 -1.8200 -8.4027 13 6 1.6320 -2.2631 -7.7900 14 6 1.1594 -1.6100 -6.6364 15 6 -0.0166 -2.0611 -5.9940 16 1 -0.1620 -1.8741 -4.9403 17 6 -0.9922 -2.7498 -6.7235 18 7 -0.9846 -2.7048 -8.0309 19 14 -2.3053 -3.7336 -5.8305 20 1 -2.0948 -3.6239 -4.3646 21 1 -3.6465 -3.1995 -6.1789 22 1 -2.2190 -5.1589 -6.2380 23 6 2.0400 -0.7213 1.2493 24 9 3.4390 -0.7218 1.2490 25 9 1.5736 -0.0618 2.3915 26 9 1.5736 -2.0403 1.2492 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 2.9703 1.4236 -0.0004 31 1 1.6767 -1.7489 -1.2493 32 1 3.1300 -0.7209 -1.2495 33 1 0.9943 0.7583 -2.3564 34 1 0.2753 0.2120 -4.8957 35 1 1.7281 1.2403 -4.9042 36 1 3.5534 0.7734 -6.3713 37 1 4.3706 -0.3881 -8.3800 38 1 3.1490 -2.3225 -9.2852 39 1 1.0974 -3.1121 -8.1898 40 1 -1.6606 -3.1824 -8.5367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777430053.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:00 Heat of formation + Delta-G solvation = -248.971183 kcal Electronic energy + Delta-G solvation = -28840.380999 eV Core-core repulsion = 24203.604529 eV Total energy + Delta-G solvation = -4636.776469 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -51.28583 -48.79808 -48.73891 -40.97458 -39.55698 -38.78056 -35.48716 -35.43803 -33.53164 -32.72377 -31.31840 -29.08129 -27.91835 -27.11718 -26.24939 -22.81262 -22.49445 -22.02089 -21.06990 -19.87271 -19.59154 -19.43164 -19.04905 -18.18965 -17.31700 -17.00023 -16.77555 -16.34068 -16.07973 -15.98571 -15.59790 -15.39606 -15.32473 -15.18138 -14.95775 -14.92981 -14.88093 -14.74233 -14.42189 -14.35251 -13.80151 -13.52985 -13.49167 -13.35308 -13.10110 -12.89035 -12.72458 -12.60510 -12.47221 -12.37993 -12.09205 -11.61976 -11.29840 -11.18641 -11.01231 -10.81225 -10.13079 -9.20241 -9.14358 -8.57259 -6.27021 1.00102 1.14133 1.38040 1.38994 1.50906 1.54198 1.81697 2.14600 2.21458 2.51427 2.68311 2.77038 2.83005 3.07453 3.40062 3.59384 3.78440 4.14938 4.33550 4.37350 4.44461 4.56246 4.61142 4.64962 4.65934 4.73989 4.84460 5.04941 5.09120 5.22721 5.37981 5.40301 5.57395 5.80132 6.06106 6.19283 6.23952 6.25180 6.44227 6.60305 6.76932 7.01718 7.13988 7.40291 8.39265 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.013683 B = 0.003543 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.848668 B = 7900.330315 C = 9236.140501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.105 3.895 3 O -0.524 6.524 4 C 0.093 3.907 5 N -0.712 5.712 6 C 0.520 3.480 7 O -0.571 6.571 8 C -0.068 4.068 9 C -0.188 4.188 10 C -0.091 4.091 11 C -0.243 4.243 12 C -0.119 4.119 13 C -0.195 4.195 14 C 0.096 3.904 15 C -0.481 4.481 16 H 0.074 0.926 17 C 0.036 3.964 18 N -0.827 5.827 19 Si 0.970 3.030 20 H -0.259 1.259 21 H -0.261 1.261 22 H -0.273 1.273 23 C 0.430 3.570 24 F -0.183 7.183 25 F -0.173 7.173 26 F -0.181 7.181 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.402 0.598 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.418 0.582 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.746 8.050 17.327 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.061 3.939 3 O -0.332 6.332 4 C -0.032 4.032 5 N -0.368 5.368 6 C 0.308 3.692 7 O -0.449 6.449 8 C -0.108 4.108 9 C -0.190 4.190 10 C -0.109 4.109 11 C -0.263 4.263 12 C -0.137 4.137 13 C -0.214 4.214 14 C 0.094 3.906 15 C -0.511 4.511 16 H 0.093 0.907 17 C -0.178 4.178 18 N -0.454 5.454 19 Si 0.792 3.208 20 H -0.182 1.182 21 H -0.186 1.186 22 H -0.198 1.198 23 C 0.374 3.626 24 F -0.165 7.165 25 F -0.155 7.155 26 F -0.163 7.163 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.254 0.746 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.256 0.744 34 H 0.119 0.881 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.121 0.879 39 H 0.114 0.886 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.502 7.405 17.078 18.621 hybrid contribution 0.103 -0.841 0.209 0.873 sum 0.605 6.564 17.287 18.501 Atomic orbital electron populations 1.21993 0.87574 1.05211 1.06240 1.22396 0.99238 0.84058 0.88248 1.86673 1.29612 1.21047 1.95918 1.21826 1.00295 0.96977 0.84109 1.45620 1.54980 1.32618 1.03624 1.21170 0.79084 0.83906 0.85044 1.90689 1.39274 1.27718 1.87202 1.20274 1.02584 0.99199 0.88712 1.19552 0.99968 0.99256 1.00199 1.20752 0.95293 0.99213 0.95636 1.20717 1.02959 1.01401 1.01180 1.20947 0.95843 0.97714 0.99187 1.21314 0.97423 1.02203 1.00489 1.17741 0.92044 0.89503 0.91308 1.19661 1.01938 1.32891 0.96595 0.90744 1.26661 1.00646 0.95272 0.95240 1.69887 1.33037 1.34325 1.08122 0.85337 0.77660 0.78216 0.79615 1.18240 1.18582 1.19778 1.21451 0.75690 0.78055 0.87359 1.93195 1.30110 1.96323 1.96833 1.93203 1.88282 1.80554 1.53428 1.93209 1.88389 1.37868 1.96785 0.89230 0.89037 0.88370 0.74649 0.90767 0.90418 0.74386 0.88147 0.86662 0.86414 0.86812 0.87885 0.88637 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.43 71.98 0.61 -1.58 16 2 C 0.10 1.70 0.56 -10.79 -0.01 1.69 16 3 O -0.52 -7.19 12.67 -148.98 -1.89 -9.07 16 4 C 0.09 2.07 4.54 86.38 0.39 2.46 16 5 N -0.71 -17.36 5.15 -463.07 -2.38 -19.74 16 6 C 0.52 18.49 7.44 87.66 0.65 19.14 16 7 O -0.57 -26.40 16.03 -3.05 -0.05 -26.45 16 8 C -0.07 -2.44 5.18 29.10 0.15 -2.29 16 9 C -0.19 -8.78 4.43 -19.40 -0.09 -8.86 16 10 C -0.09 -3.99 9.66 22.22 0.21 -3.78 16 11 C -0.24 -10.98 10.05 22.46 0.23 -10.75 16 12 C -0.12 -5.83 10.02 22.22 0.22 -5.61 16 13 C -0.19 -10.73 8.69 22.73 0.20 -10.53 16 14 C 0.10 5.19 5.56 -21.29 -0.12 5.07 16 15 C -0.48 -25.40 8.14 23.46 0.19 -25.21 16 16 H 0.07 3.78 6.67 -2.91 -0.02 3.76 16 17 C 0.04 1.82 5.16 85.26 0.44 2.26 16 18 N -0.83 -43.51 10.95 21.82 0.24 -43.27 16 19 Si 0.97 38.39 29.59 68.60 2.03 40.42 16 20 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 21 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 22 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 23 C 0.43 7.75 2.38 71.98 0.17 7.92 16 24 F -0.18 -3.43 16.42 44.97 0.74 -2.69 16 25 F -0.17 -3.18 16.74 44.97 0.75 -2.43 16 26 F -0.18 -3.74 16.28 44.97 0.73 -3.00 16 27 H 0.09 1.30 7.80 -2.39 -0.02 1.28 16 28 H 0.09 1.14 7.80 -2.39 -0.02 1.12 16 29 H 0.10 1.27 6.86 -2.39 -0.02 1.25 16 30 H 0.40 3.47 8.69 -74.06 -0.64 2.83 16 31 H 0.07 1.92 7.80 -2.39 -0.02 1.90 16 32 H 0.08 1.78 7.80 -2.39 -0.02 1.77 16 33 H 0.42 7.57 7.19 -92.70 -0.67 6.90 16 34 H 0.10 3.54 7.08 -2.39 -0.02 3.53 16 35 H 0.12 3.19 8.05 -2.39 -0.02 3.17 16 36 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 37 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 38 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 39 H 0.10 5.52 6.20 -2.91 -0.02 5.51 16 40 H 0.28 13.60 8.30 -92.71 -0.77 12.84 16 Total: -1.00 -68.82 349.82 3.23 -65.59 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -0.19 Total: 30.70 kcal Atomic # 6 Polarization: -33.32 SS G_CDS: 3.25 Total: -30.06 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -2.15 Total: -63.01 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -1.94 Total: -35.52 kcal Atomic # 9 Polarization: -10.34 SS G_CDS: 2.22 Total: -8.12 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Total: -68.82 3.23 -65.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777430053.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.379 kcal (2) G-P(sol) polarization free energy of solvation -68.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds