Wall clock time and date at job start Tue Mar 31 2020 16:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35846 * 120.90596 * 2 1 4 4 C 1.41008 * 119.82717 * 179.97438 * 3 2 1 5 5 O 1.21794 * 119.15648 * 180.02562 * 4 3 2 6 6 O 1.34224 * 121.68474 * 359.71455 * 4 3 2 7 7 C 1.35029 * 121.46423 * 0.57568 * 6 4 3 8 8 C 1.38683 * 120.73566 * 179.71493 * 7 6 4 9 9 C 1.38516 * 119.78425 * 179.68151 * 8 7 6 10 10 O 1.35739 * 119.73010 * 179.97438 * 9 8 7 11 11 C 1.42899 * 117.00210 * 180.02562 * 10 9 8 12 12 C 1.50708 * 109.47040 * 180.02562 * 11 10 9 13 13 O 1.21277 * 120.00144 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99677 * 180.02562 * 12 11 10 15 15 C 1.46504 * 119.99895 * 179.97438 * 14 12 11 16 16 C 1.52994 * 109.47319 * 179.97438 * 15 14 12 17 17 C 1.50702 * 109.47402 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99594 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00087 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00331 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99815 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47384 * 59.99532 * 21 19 17 23 23 H 1.48500 * 109.47073 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46896 * 299.99137 * 21 19 17 25 25 C 1.39378 * 120.54187 * 0.04174 * 9 8 7 26 26 C 1.36456 * 120.42984 * 359.97438 * 25 9 8 27 27 C 1.39961 * 119.79740 * 359.97438 * 26 25 9 28 28 H 1.08998 * 109.47560 * 270.02631 * 1 2 3 29 29 H 1.09007 * 109.47132 * 30.02582 * 1 2 3 30 30 H 1.08996 * 109.47395 * 150.02135 * 1 2 3 31 31 H 1.08000 * 120.08776 * 359.95718 * 3 2 1 32 32 H 1.07991 * 120.10851 * 359.67931 * 8 7 6 33 33 H 1.08997 * 109.47330 * 299.99920 * 11 10 9 34 34 H 1.09002 * 109.47209 * 60.00744 * 11 10 9 35 35 H 0.97003 * 120.00322 * 359.97438 * 14 12 11 36 36 H 1.08994 * 109.47174 * 300.00494 * 15 14 12 37 37 H 1.09001 * 109.46941 * 60.00187 * 15 14 12 38 38 H 1.09002 * 109.47500 * 300.00233 * 16 15 14 39 39 H 1.09002 * 109.47172 * 60.00615 * 16 15 14 40 40 H 0.97003 * 120.00257 * 180.02562 * 20 19 17 41 41 H 1.08004 * 119.78381 * 179.97438 * 25 9 8 42 42 H 1.08004 * 120.09999 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2047 1.1656 0.0000 4 6 3.6145 1.1390 0.0005 5 8 4.2278 2.1913 0.0010 6 8 4.2979 -0.0162 0.0068 7 6 3.6655 -1.2092 0.0012 8 6 4.3867 -2.3938 0.0019 9 6 3.7177 -3.6067 0.0028 10 8 4.4247 -4.7654 0.0029 11 6 3.6758 -5.9824 0.0033 12 6 4.6226 -7.1549 0.0040 13 8 5.8207 -6.9668 0.0036 14 7 4.1379 -8.4124 0.0039 15 6 5.0583 -9.5523 0.0040 16 6 4.2564 -10.8553 0.0046 17 6 5.2032 -12.0278 0.0053 18 1 6.2702 -11.8602 0.0049 19 6 4.7073 -13.3142 0.0054 20 7 3.4081 -13.5182 0.0053 21 14 5.8809 -14.7676 0.0070 22 1 6.7356 -14.7124 1.2201 23 1 5.1026 -16.0323 0.0074 24 1 6.7374 -14.7134 -1.2049 25 6 2.3245 -3.6471 0.0022 26 6 1.5995 -2.4911 0.0013 27 6 2.2590 -1.2565 0.0014 28 1 -0.3634 0.0005 1.0276 29 1 -0.3634 0.8898 -0.5143 30 1 -0.3634 -0.8901 -0.5135 31 1 1.6810 2.1101 -0.0007 32 1 5.4664 -2.3706 0.0016 33 1 3.0480 -6.0224 0.8934 34 1 3.0477 -6.0228 -0.8866 35 1 3.1796 -8.5629 0.0038 36 1 5.6864 -9.5121 -0.8858 37 1 5.6862 -9.5121 0.8941 38 1 3.6286 -10.8952 0.8947 39 1 3.6283 -10.8957 -0.8853 40 1 3.0592 -14.4233 0.0057 41 1 1.8155 -4.5996 0.0025 42 1 0.5202 -2.5286 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784135411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:26 Heat of formation + Delta-G solvation = -110.590024 kcal Electronic energy + Delta-G solvation = -26080.900710 eV Core-core repulsion = 21991.981639 eV Total energy + Delta-G solvation = -4088.919071 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.29988 -40.62373 -39.27030 -38.30442 -37.29543 -35.58004 -35.00184 -32.98744 -31.64389 -30.47263 -29.74005 -29.35401 -28.14895 -24.97700 -24.29178 -23.86378 -22.43184 -21.23447 -20.59661 -19.96703 -18.76516 -17.94859 -17.66318 -17.15584 -16.74175 -16.64988 -16.49164 -15.62515 -15.49865 -15.10404 -14.83023 -14.55894 -14.53357 -14.32244 -14.17317 -14.14502 -13.72618 -13.46598 -13.17085 -13.11997 -12.93051 -12.37373 -12.36647 -12.19940 -11.68614 -11.62810 -11.31794 -11.08693 -10.73280 -10.67004 -10.44266 -10.27113 -9.96268 -9.61022 -9.33414 -9.33213 -8.72393 -8.52072 -8.47119 -6.17050 -4.20325 -0.20038 0.54237 1.09297 1.80163 2.41165 2.52964 2.67396 3.19893 3.26635 3.30756 3.33839 3.59766 3.72702 3.76665 3.88817 4.15951 4.33082 4.35366 4.55899 4.59432 4.71582 4.74746 4.79779 4.82210 4.88608 5.10330 5.18084 5.20334 5.26410 5.39259 5.56941 5.62842 5.72174 5.80601 6.16852 6.21046 6.58398 6.66654 6.76080 6.80972 7.12540 7.39825 7.49715 7.74025 7.80688 8.16977 8.37801 8.85110 9.45108 10.94353 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.035169 B = 0.001650 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.964913 B =16963.434361 C =17728.347096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.045 3.955 3 C -0.273 4.273 4 C 0.513 3.487 5 O -0.469 6.469 6 O -0.270 6.270 7 C 0.192 3.808 8 C -0.174 4.174 9 C 0.195 3.805 10 O -0.276 6.276 11 C 0.036 3.964 12 C 0.506 3.494 13 O -0.525 6.525 14 N -0.716 5.716 15 C 0.122 3.878 16 C 0.013 3.987 17 C -0.524 4.524 18 H 0.059 0.941 19 C 0.060 3.940 20 N -0.894 5.894 21 Si 0.898 3.102 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.275 1.275 25 C -0.228 4.228 26 C -0.012 4.012 27 C -0.199 4.199 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.161 0.839 32 H 0.155 0.845 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.399 0.601 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.263 0.737 41 H 0.144 0.856 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.211 25.277 0.024 28.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.044 3.956 3 C -0.292 4.292 4 C 0.363 3.637 5 O -0.357 6.357 6 O -0.182 6.182 7 C 0.146 3.854 8 C -0.193 4.193 9 C 0.148 3.852 10 O -0.186 6.186 11 C -0.042 4.042 12 C 0.290 3.710 13 O -0.401 6.401 14 N -0.368 5.368 15 C 0.001 3.999 16 C -0.025 4.025 17 C -0.563 4.563 18 H 0.078 0.922 19 C -0.142 4.142 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.247 4.247 26 C -0.030 4.030 27 C -0.200 4.200 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.179 0.821 32 H 0.173 0.827 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.233 0.767 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.073 0.927 41 H 0.162 0.838 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.739 25.729 0.025 27.880 hybrid contribution -0.288 -1.005 0.003 1.045 sum -11.027 24.724 0.028 27.071 Atomic orbital electron populations 1.21027 0.89026 1.04467 1.04009 1.21495 0.96840 0.90922 0.86334 1.22307 0.92809 1.00354 1.13697 1.19180 0.88208 0.81064 0.75297 1.90986 1.72088 1.25621 1.47045 1.83560 1.43459 1.13660 1.77509 1.18493 0.89287 0.83114 0.94467 1.19485 1.01844 0.86600 1.11411 1.18821 0.89870 0.85927 0.90624 1.86182 1.34359 1.11474 1.86611 1.22746 0.94627 0.82596 1.04266 1.19848 0.89064 0.83915 0.78214 1.90754 1.15590 1.85175 1.48544 1.46199 1.11361 1.05338 1.73888 1.21816 0.92395 0.84518 1.01184 1.19333 0.95806 0.89380 0.97946 1.20995 0.93109 0.90457 1.51744 0.92227 1.24986 0.95221 0.99136 0.94850 1.69933 1.11547 1.21642 1.50130 0.86556 0.80746 0.81313 0.78841 1.20074 1.21210 1.20070 1.21138 0.92572 1.00489 1.10481 1.20684 1.00299 0.89683 0.92335 1.18903 0.91587 0.94536 1.14979 0.89014 0.89771 0.89963 0.82139 0.82695 0.88414 0.88405 0.76684 0.92213 0.92218 0.95833 0.95835 0.92726 0.83784 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.31 9.64 36.00 0.35 0.04 16 2 C 0.05 0.27 6.08 -102.18 -0.62 -0.35 16 3 C -0.27 -2.12 9.62 -39.39 -0.38 -2.50 16 4 C 0.51 5.93 7.89 31.78 0.25 6.18 16 5 O -0.47 -6.90 17.91 -19.60 -0.35 -7.25 16 6 O -0.27 -3.18 9.82 -20.81 -0.20 -3.39 16 7 C 0.19 1.90 6.76 -38.48 -0.26 1.64 16 8 C -0.17 -1.76 9.94 -39.31 -0.39 -2.15 16 9 C 0.20 1.86 6.69 -39.05 -0.26 1.59 16 10 O -0.28 -3.26 9.65 -38.83 -0.37 -3.64 16 11 C 0.04 0.35 5.21 36.01 0.19 0.53 16 12 C 0.51 7.56 7.91 -10.98 -0.09 7.47 16 13 O -0.52 -10.41 16.50 -14.35 -0.24 -10.64 16 14 N -0.72 -10.77 5.56 -60.30 -0.33 -11.10 16 15 C 0.12 2.40 5.61 -4.04 -0.02 2.38 16 16 C 0.01 0.30 5.09 -27.89 -0.14 0.15 16 17 C -0.52 -13.97 9.11 -34.44 -0.31 -14.28 16 18 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -25.16 13.29 55.43 0.74 -24.42 16 21 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 C -0.23 -1.49 8.96 -39.80 -0.36 -1.85 16 26 C -0.01 -0.07 9.36 -39.58 -0.37 -0.44 16 27 C -0.20 -1.50 5.87 -105.01 -0.62 -2.12 16 28 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.08 0.13 8.10 -51.92 -0.42 -0.29 16 30 H 0.08 0.10 6.62 -51.93 -0.34 -0.24 16 31 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.16 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.10 0.64 7.64 -51.93 -0.40 0.24 16 34 H 0.10 0.64 7.64 -51.93 -0.40 0.24 16 35 H 0.40 4.75 8.47 -40.82 -0.35 4.41 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.14 0.59 6.25 -52.48 -0.33 0.26 16 42 H 0.14 0.33 6.52 -52.48 -0.34 -0.01 16 LS Contribution 366.88 15.07 5.53 5.53 Total: -1.00 -35.10 366.88 -8.46 -43.57 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -5.07 Total: -2.25 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -3.13 Total: -2.16 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.40 Total: -35.53 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -1.17 Total: -24.92 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.10 -8.46 -43.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784135411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.024 kcal (2) G-P(sol) polarization free energy of solvation -35.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds