Wall clock time and date at job start Tue Mar 31 2020 17:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.44367 * 2 1 4 4 O 1.42997 * 109.44929 * 240.08855 * 2 1 3 5 5 C 1.35671 * 116.73747 * 286.34961 * 4 2 1 6 6 C 1.39414 * 119.55638 * 327.22808 * 5 4 2 7 7 C 1.38394 * 120.07326 * 179.90272 * 6 5 4 8 8 C 1.38602 * 120.17270 * 0.03847 * 7 6 5 9 9 C 1.37749 * 120.42086 * 359.66123 * 8 7 6 10 10 C 1.39842 * 120.72131 * 147.14784 * 5 4 2 11 11 C 1.47415 * 120.23967 * 0.09320 * 10 5 4 12 12 O 1.21507 * 119.99810 * 6.13329 * 11 10 5 13 13 O 1.34746 * 120.00034 * 186.13618 * 11 10 5 14 14 C 1.45199 * 117.00113 * 180.65961 * 13 11 10 15 15 C 1.50695 * 112.90981 * 305.91172 * 14 13 11 16 16 H 1.07993 * 120.00433 * 133.56007 * 15 14 13 17 17 C 1.37880 * 119.99732 * 313.56647 * 15 14 13 18 18 N 1.31510 * 120.00101 * 181.24534 * 17 15 14 19 19 Si 1.86798 * 119.99965 * 1.23509 * 17 15 14 20 20 H 1.48506 * 109.46800 * 85.07466 * 19 17 15 21 21 H 1.48501 * 109.47031 * 205.06940 * 19 17 15 22 22 H 1.48493 * 109.47539 * 325.07562 * 19 17 15 23 23 C 1.53783 * 113.61233 * 174.65579 * 14 13 11 24 24 C 1.53778 * 87.08286 * 270.88263 * 23 14 13 25 25 C 1.53779 * 87.08295 * 334.57194 * 24 23 14 26 26 N 1.40254 * 119.21532 * 359.84809 * 6 5 4 27 27 C 1.35095 * 118.95343 * 15.51730 * 26 6 5 28 28 O 1.21289 * 120.14287 * 181.64399 * 27 26 6 29 29 H 1.08992 * 109.47575 * 300.06874 * 1 2 3 30 30 H 1.08999 * 109.46404 * 60.06698 * 1 2 3 31 31 H 1.09000 * 109.46752 * 180.02562 * 1 2 3 32 32 H 1.07994 * 119.91501 * 180.02562 * 7 6 5 33 33 H 1.07989 * 119.78798 * 179.97438 * 8 7 6 34 34 H 1.08001 * 119.95891 * 180.30982 * 9 8 7 35 35 H 0.97002 * 120.00713 * 179.97438 * 18 17 15 36 36 H 1.08995 * 113.61323 * 25.43874 * 23 14 13 37 37 H 1.09002 * 113.61204 * 156.33697 * 23 14 13 38 38 H 1.08999 * 113.60987 * 89.11924 * 24 23 14 39 39 H 1.09001 * 113.61771 * 220.01966 * 24 23 14 40 40 H 1.09007 * 113.60957 * 270.88281 * 25 24 23 41 41 H 1.09002 * 113.69364 * 139.99241 * 25 24 23 42 42 H 0.96997 * 120.52261 * 195.54284 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0062 -0.6724 -1.1688 5 6 1.8878 -2.0238 -1.1863 6 6 1.9968 -2.7392 0.0053 7 6 1.8758 -4.1179 0.0000 8 6 1.6468 -4.7925 -1.1889 9 6 1.5307 -4.0989 -2.3733 10 6 1.6564 -2.7051 -2.3854 11 6 1.5395 -1.9601 -3.6520 12 8 1.7543 -0.7644 -3.6756 13 8 1.1944 -2.6050 -4.7837 14 6 1.1128 -1.8107 -5.9964 15 6 0.2065 -0.6152 -5.8547 16 1 0.5315 0.3534 -6.2047 17 6 -1.0378 -0.7579 -5.2782 18 7 -1.8386 0.2804 -5.1767 19 14 -1.5864 -2.4261 -4.6414 20 1 -1.0821 -2.6180 -3.2578 21 1 -3.0699 -2.4925 -4.6412 22 1 -1.0432 -3.4940 -5.5188 23 6 0.8416 -2.6430 -7.2608 24 6 2.3664 -2.7898 -7.3960 25 6 2.4840 -1.4754 -6.6065 26 7 2.2305 -2.0453 1.2015 27 6 2.0318 -0.7094 1.2321 28 8 2.2559 -0.0834 2.2465 29 1 -0.3634 0.5148 0.8893 30 1 -0.3632 0.5128 -0.8906 31 1 -0.3633 -1.0277 0.0005 32 1 1.9602 -4.6695 0.9246 33 1 1.5538 -5.8684 -1.1859 34 1 1.3473 -4.6317 -3.2946 35 1 -2.7141 0.1800 -4.7715 36 1 0.3282 -3.5838 -7.0624 37 1 0.3845 -2.0725 -8.0693 38 1 2.7703 -3.6537 -6.8683 39 1 2.7229 -2.7155 -8.4234 40 1 2.4759 -0.5856 -7.2362 41 1 3.2963 -1.4722 -5.8797 42 1 2.5304 -2.5170 1.9942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788145550.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:24 Heat of formation + Delta-G solvation = -84.925347 kcal Electronic energy + Delta-G solvation = -29900.487556 eV Core-core repulsion = 25812.681389 eV Total energy + Delta-G solvation = -4087.806168 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.71065 -39.81261 -38.85956 -37.65844 -37.08386 -35.16199 -34.39811 -32.33750 -31.97792 -30.71563 -29.15385 -26.95593 -24.97276 -24.89722 -24.52471 -23.49839 -22.39362 -20.93926 -19.65579 -19.01865 -18.36749 -17.89917 -17.16494 -16.57467 -16.15738 -15.94524 -15.55415 -15.45063 -15.11781 -15.06317 -14.64936 -14.41824 -14.15437 -14.00368 -13.26093 -13.13910 -12.91174 -12.64626 -12.49676 -12.18080 -12.17548 -11.92001 -11.69208 -11.52820 -11.45386 -11.21695 -10.94685 -10.87302 -10.35230 -10.31374 -10.11205 -10.03378 -9.85744 -9.45035 -9.06584 -8.78823 -8.59447 -8.49905 -8.08584 -6.12824 -4.14531 0.72779 0.98137 2.11408 2.55734 3.07068 3.19672 3.30466 3.31737 3.43632 3.57803 3.86577 3.97841 4.42255 4.48872 4.73372 4.76578 4.88647 5.02459 5.11408 5.15291 5.22694 5.48283 5.49473 5.55072 5.61617 5.61904 5.72572 5.90983 5.98935 6.09101 6.17934 6.24275 6.27335 6.32600 6.50303 6.60260 6.60865 6.63101 6.77325 6.98187 7.17602 7.26813 7.35393 7.58835 7.74433 8.41064 8.84240 8.94077 9.47979 10.98516 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014672 B = 0.005116 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.979771 B = 5471.740758 C = 5997.351526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.076 3.924 3 H 0.154 0.846 4 O -0.263 6.263 5 C 0.138 3.862 6 C 0.073 3.927 7 C -0.101 4.101 8 C -0.127 4.127 9 C -0.061 4.061 10 C -0.102 4.102 11 C 0.494 3.506 12 O -0.441 6.441 13 O -0.357 6.357 14 C 0.195 3.805 15 C -0.504 4.504 16 H 0.085 0.915 17 C 0.080 3.920 18 N -0.886 5.886 19 Si 0.879 3.121 20 H -0.279 1.279 21 H -0.304 1.304 22 H -0.253 1.253 23 C -0.121 4.121 24 C -0.146 4.146 25 C -0.142 4.142 26 N -0.657 5.657 27 C 0.498 3.502 28 O -0.514 6.514 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.147 0.853 35 H 0.264 0.736 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.550 -10.882 9.069 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.016 3.984 3 H 0.171 0.829 4 O -0.175 6.175 5 C 0.090 3.910 6 C -0.022 4.022 7 C -0.122 4.122 8 C -0.146 4.146 9 C -0.080 4.080 10 C -0.104 4.104 11 C 0.334 3.666 12 O -0.325 6.325 13 O -0.276 6.276 14 C 0.160 3.840 15 C -0.541 4.541 16 H 0.103 0.897 17 C -0.124 4.124 18 N -0.523 5.523 19 Si 0.709 3.291 20 H -0.206 1.206 21 H -0.232 1.232 22 H -0.178 1.178 23 C -0.159 4.159 24 C -0.184 4.184 25 C -0.179 4.179 26 N -0.304 5.304 27 C 0.285 3.715 28 O -0.388 6.388 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.165 0.835 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.073 0.927 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 6.595 -9.760 9.378 15.057 hybrid contribution -0.400 -1.049 1.062 1.546 sum 6.194 -10.809 10.441 16.255 Atomic orbital electron populations 1.22364 0.92011 1.03974 1.05202 1.22990 0.97058 0.97851 0.80461 0.82851 1.86577 1.77118 1.14894 1.38949 1.18514 0.97807 0.83466 0.91246 1.17831 1.06909 0.92508 0.84945 1.20743 1.00980 0.90890 0.99559 1.20899 1.01992 1.00451 0.91254 1.21450 0.95101 0.91904 0.99521 1.19075 1.06579 0.93725 0.91026 1.20173 0.76571 0.86192 0.83646 1.90893 1.41610 1.14082 1.85886 1.86304 1.78779 1.44866 1.17667 1.21210 0.94304 0.89874 0.78605 1.20993 0.98120 0.94385 1.40584 0.89679 1.24957 0.96294 0.96580 0.94579 1.69911 1.09078 1.29902 1.43384 0.86856 0.76192 0.85606 0.80437 1.20554 1.23209 1.17762 1.23261 0.94962 0.99930 0.97714 1.22923 0.97702 0.98288 0.99449 1.23331 0.98342 0.97128 0.99146 1.43649 1.66384 1.08123 1.12287 1.21640 0.76873 0.81990 0.90965 1.90778 1.49479 1.65087 1.33506 0.90018 0.88534 0.91851 0.84652 0.84382 0.83497 0.92658 0.92082 0.88683 0.91032 0.92413 0.89562 0.92682 0.74615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 9.30 37.16 0.35 -2.23 16 2 C 0.08 1.14 3.81 -27.85 -0.11 1.03 16 3 H 0.15 2.04 8.14 -51.93 -0.42 1.62 16 4 O -0.26 -4.84 8.32 -40.32 -0.34 -5.18 16 5 C 0.14 2.37 5.85 -38.54 -0.23 2.14 16 6 C 0.07 0.97 6.54 -83.51 -0.55 0.43 16 7 C -0.10 -1.05 9.94 -39.39 -0.39 -1.44 16 8 C -0.13 -1.37 10.02 -39.63 -0.40 -1.77 16 9 C -0.06 -0.88 9.61 -39.12 -0.38 -1.26 16 10 C -0.10 -1.88 5.78 -104.92 -0.61 -2.48 16 11 C 0.49 11.18 5.86 34.47 0.20 11.38 16 12 O -0.44 -11.35 13.62 -26.51 -0.36 -11.71 16 13 O -0.36 -8.03 6.56 -40.62 -0.27 -8.30 16 14 C 0.19 4.53 0.13 -90.96 -0.01 4.52 16 15 C -0.50 -14.01 7.33 -34.44 -0.25 -14.26 16 16 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 17 C 0.08 2.29 5.40 -17.82 -0.10 2.19 16 18 N -0.89 -26.87 13.96 55.43 0.77 -26.09 16 19 Si 0.88 21.90 24.51 -169.99 -4.17 17.74 16 20 H -0.28 -6.80 6.70 56.52 0.38 -6.42 16 21 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 22 H -0.25 -5.89 5.65 56.52 0.32 -5.57 16 23 C -0.12 -2.42 6.85 -25.92 -0.18 -2.60 16 24 C -0.15 -2.51 8.02 -25.92 -0.21 -2.72 16 25 C -0.14 -2.88 7.20 -25.92 -0.19 -3.07 16 26 N -0.66 -7.91 5.48 -9.67 -0.05 -7.96 16 27 C 0.50 7.12 7.19 -10.81 -0.08 7.04 16 28 O -0.51 -8.31 17.95 5.55 0.10 -8.21 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.06 0.94 7.81 -51.93 -0.41 0.53 16 32 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.15 2.00 7.63 -52.49 -0.40 1.60 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.06 1.19 7.07 -51.93 -0.37 0.82 16 37 H 0.09 1.87 8.09 -51.93 -0.42 1.45 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.09 1.75 8.09 -51.92 -0.42 1.32 16 41 H 0.05 1.12 8.11 -51.93 -0.42 0.69 16 42 H 0.41 3.76 8.89 -40.82 -0.36 3.40 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -34.42 347.56 -7.60 -42.03 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.42 Total: 5.54 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -3.11 Total: -3.10 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.72 Total: -34.05 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.86 Total: -33.40 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.17 Total: 17.74 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.42 -7.60 -42.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788145550.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.898 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds