Wall clock time and date at job start Tue Mar 31 2020 17:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.44039 * 2 1 4 4 O 1.43001 * 109.41741 * 119.91187 * 2 1 3 5 5 C 1.35668 * 116.86531 * 166.18454 * 4 2 1 6 6 C 1.39422 * 119.55928 * 327.68855 * 5 4 2 7 7 C 1.38393 * 120.06831 * 179.68270 * 6 5 4 8 8 C 1.38594 * 120.17269 * 359.75270 * 7 6 5 9 9 C 1.37757 * 120.42797 * 0.02562 * 8 7 6 10 10 C 1.39837 * 120.70856 * 146.87367 * 5 4 2 11 11 C 1.47400 * 120.24051 * 0.60095 * 10 5 4 12 12 O 1.21504 * 120.00255 * 5.27515 * 11 10 5 13 13 O 1.34753 * 120.00091 * 185.27423 * 11 10 5 14 14 C 1.45195 * 117.00236 * 182.98124 * 13 11 10 15 15 C 1.50705 * 112.85026 * 295.14064 * 14 13 11 16 16 H 1.07993 * 120.00251 * 117.27230 * 15 14 13 17 17 C 1.37880 * 119.99559 * 297.27190 * 15 14 13 18 18 N 1.31514 * 119.99754 * 174.59903 * 17 15 14 19 19 Si 1.86799 * 120.00194 * 354.59932 * 17 15 14 20 20 H 1.48509 * 109.46884 * 269.21007 * 19 17 15 21 21 H 1.48499 * 109.46974 * 149.21702 * 19 17 15 22 22 H 1.48493 * 109.47109 * 29.21017 * 19 17 15 23 23 C 1.53780 * 113.61722 * 66.33659 * 14 13 11 24 24 C 1.53957 * 87.02277 * 89.22848 * 23 14 13 25 25 C 1.53783 * 113.61506 * 163.94529 * 14 13 11 26 26 N 1.40257 * 119.21335 * 359.41359 * 6 5 4 27 27 C 1.35089 * 118.95787 * 15.68810 * 26 6 5 28 28 O 1.21297 * 120.13433 * 181.71797 * 27 26 6 29 29 H 1.09007 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47414 * 299.93912 * 1 2 3 31 31 H 1.08999 * 109.46887 * 59.94282 * 1 2 3 32 32 H 1.08004 * 119.91303 * 179.78102 * 7 6 5 33 33 H 1.08002 * 119.79027 * 180.02562 * 8 7 6 34 34 H 1.07999 * 119.95602 * 179.97438 * 9 8 7 35 35 H 0.97005 * 120.00025 * 179.97438 * 18 17 15 36 36 H 1.08994 * 113.61415 * 203.75191 * 23 14 13 37 37 H 1.09005 * 113.60859 * 334.65114 * 23 14 13 38 38 H 1.09003 * 113.53776 * 270.81480 * 24 23 14 39 39 H 1.08993 * 113.74218 * 139.94542 * 24 23 14 40 40 H 1.08999 * 113.61642 * 25.34200 * 25 14 13 41 41 H 1.08994 * 113.61409 * 156.25317 * 25 14 13 42 42 H 0.96998 * 120.52055 * 195.65955 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8928 1.0278 0.0000 4 8 2.0054 -0.6725 1.1690 5 6 3.3176 -1.0165 1.1874 6 6 3.9571 -1.3535 -0.0048 7 6 5.2970 -1.6997 0.0009 8 6 6.0093 -1.7079 1.1898 9 6 5.3924 -1.3729 2.3751 10 6 4.0382 -1.0201 2.3858 11 6 3.3746 -0.6611 3.6521 12 8 2.1775 -0.4541 3.6733 13 8 4.0955 -0.5625 4.7863 14 6 3.3665 -0.2707 6.0076 15 6 2.7193 1.0902 5.9918 16 1 1.6443 1.1777 6.0480 17 6 3.4996 2.2237 5.9055 18 7 2.9331 3.4044 5.7846 19 14 5.3614 2.0823 5.9603 20 1 5.8249 2.1917 7.3670 21 1 5.9647 3.1739 5.1542 22 1 5.7747 0.7692 5.4036 23 6 2.4170 -1.3993 6.4429 24 6 3.6034 -1.9847 7.2304 25 6 4.1697 -0.5560 7.2876 26 7 3.2252 -1.3420 -1.2012 27 6 2.0319 -0.7095 -1.2318 28 8 1.3668 -0.7128 -2.2462 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5129 0.8905 31 1 -0.3633 0.5147 -0.8895 32 1 5.7890 -1.9638 -0.9236 33 1 7.0548 -1.9787 1.1870 34 1 5.9546 -1.3822 3.2971 35 1 3.4820 4.2019 5.7243 36 1 1.5973 -1.0602 7.0762 37 1 2.0838 -2.0313 5.6197 38 1 4.2149 -2.6737 6.6478 39 1 3.3279 -2.3846 8.2061 40 1 5.2493 -0.5083 7.1454 41 1 3.8299 0.0140 8.1523 42 1 3.5706 -1.7808 -1.9942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788145555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:28 Heat of formation + Delta-G solvation = -85.384441 kcal Electronic energy + Delta-G solvation = -29407.449467 eV Core-core repulsion = 25319.623392 eV Total energy + Delta-G solvation = -4087.826075 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.63736 -39.74913 -38.88100 -37.62639 -37.06386 -35.20137 -34.30197 -32.37089 -32.14246 -30.62829 -29.08356 -26.99769 -25.17482 -24.95796 -24.22559 -23.36681 -22.28232 -20.86287 -19.77338 -19.06211 -18.41558 -17.86317 -17.26835 -16.96291 -16.26516 -15.90670 -15.39853 -15.20034 -15.05097 -14.80175 -14.66368 -14.49982 -14.17968 -13.91986 -13.17574 -13.13311 -12.94024 -12.74388 -12.41843 -12.19546 -12.14007 -11.79184 -11.59091 -11.54108 -11.38151 -11.23739 -11.07398 -10.90283 -10.36483 -10.28247 -10.13896 -10.02059 -9.88123 -9.47603 -8.94202 -8.79269 -8.69745 -8.41320 -8.09433 -6.16311 -4.20930 0.72890 0.96819 2.10809 2.53910 3.09366 3.17539 3.26977 3.33072 3.45140 3.55872 3.88136 3.98700 4.40991 4.48584 4.69532 4.80065 4.88677 5.02703 5.10526 5.17525 5.26481 5.44263 5.48439 5.61052 5.65830 5.72502 5.74754 5.88400 5.96677 6.07877 6.16998 6.24509 6.26219 6.33438 6.51643 6.56386 6.59754 6.61505 6.75247 6.96675 7.17678 7.27693 7.46711 7.58583 7.76586 8.41717 8.87651 8.98254 9.46169 10.94557 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014117 B = 0.004516 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.013583 B = 6198.323218 C = 6620.389419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.073 3.927 3 H 0.107 0.893 4 O -0.265 6.265 5 C 0.138 3.862 6 C 0.071 3.929 7 C -0.100 4.100 8 C -0.128 4.128 9 C -0.058 4.058 10 C -0.102 4.102 11 C 0.498 3.502 12 O -0.461 6.461 13 O -0.353 6.353 14 C 0.195 3.805 15 C -0.510 4.510 16 H 0.083 0.917 17 C 0.083 3.917 18 N -0.882 5.882 19 Si 0.861 3.139 20 H -0.278 1.278 21 H -0.292 1.292 22 H -0.234 1.234 23 C -0.139 4.139 24 C -0.145 4.145 25 C -0.126 4.126 26 N -0.659 5.659 27 C 0.495 3.505 28 O -0.510 6.510 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.149 0.851 35 H 0.265 0.735 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.123 -10.844 -10.251 16.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.014 3.986 3 H 0.124 0.876 4 O -0.178 6.178 5 C 0.089 3.911 6 C -0.024 4.024 7 C -0.121 4.121 8 C -0.146 4.146 9 C -0.077 4.077 10 C -0.105 4.105 11 C 0.339 3.661 12 O -0.347 6.347 13 O -0.271 6.271 14 C 0.160 3.840 15 C -0.546 4.546 16 H 0.101 0.899 17 C -0.122 4.122 18 N -0.519 5.519 19 Si 0.687 3.313 20 H -0.204 1.204 21 H -0.219 1.219 22 H -0.157 1.157 23 C -0.177 4.177 24 C -0.182 4.182 25 C -0.164 4.164 26 N -0.306 5.306 27 C 0.282 3.718 28 O -0.385 6.385 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.166 0.834 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 5.098 -10.505 -10.523 15.718 hybrid contribution 1.323 0.076 -0.586 1.449 sum 6.420 -10.430 -11.109 16.535 Atomic orbital electron populations 1.21690 0.88622 1.04302 1.04368 1.22744 0.98651 0.96538 0.80663 0.87558 1.86513 1.20129 1.72596 1.38538 1.18564 0.83852 0.97335 0.91318 1.17849 0.92833 1.06770 0.84929 1.20743 0.90788 1.00956 0.99574 1.20913 1.00457 1.01996 0.91269 1.21471 0.92273 0.94451 0.99479 1.19096 0.93574 1.06775 0.91045 1.20226 0.85832 0.76167 0.83898 1.90847 1.15099 1.42441 1.86309 1.86551 1.42944 1.80941 1.16654 1.21078 0.89272 0.94911 0.78693 1.21043 0.95485 0.87057 1.51048 0.89889 1.25022 0.98922 0.95131 0.93136 1.69948 1.36111 0.98225 1.47649 0.87135 0.86211 0.79470 0.78490 1.20371 1.21913 1.15709 1.23293 0.97042 0.97922 0.99400 1.22942 0.98811 0.96717 0.99756 1.23211 0.99156 0.95770 0.98246 1.43678 1.20135 1.54559 1.12267 1.21713 0.80343 0.78736 0.91049 1.90764 1.55232 1.59083 1.33401 0.91205 0.89380 0.89264 0.84717 0.84439 0.83376 0.92535 0.89502 0.92440 0.91036 0.92293 0.92324 0.88567 0.74644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 9.14 37.16 0.34 -1.37 16 2 C 0.07 1.07 3.69 -27.86 -0.10 0.96 16 3 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 4 O -0.26 -4.71 8.21 -40.33 -0.33 -5.04 16 5 C 0.14 2.27 6.45 -38.54 -0.25 2.02 16 6 C 0.07 0.91 6.54 -83.50 -0.55 0.36 16 7 C -0.10 -0.99 9.94 -39.39 -0.39 -1.38 16 8 C -0.13 -1.31 10.02 -39.63 -0.40 -1.71 16 9 C -0.06 -0.80 9.61 -39.12 -0.38 -1.18 16 10 C -0.10 -1.81 5.88 -104.93 -0.62 -2.43 16 11 C 0.50 11.01 7.26 34.46 0.25 11.26 16 12 O -0.46 -11.56 13.38 -26.52 -0.35 -11.91 16 13 O -0.35 -7.93 7.04 -40.64 -0.29 -8.21 16 14 C 0.19 4.54 0.10 -90.96 -0.01 4.53 16 15 C -0.51 -14.21 7.95 -34.44 -0.27 -14.49 16 16 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 17 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 18 N -0.88 -26.68 13.96 55.43 0.77 -25.90 16 19 Si 0.86 20.84 25.16 -169.99 -4.28 16.56 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.23 -5.29 5.41 56.52 0.31 -4.98 16 23 C -0.14 -2.86 6.91 -25.83 -0.18 -3.04 16 24 C -0.14 -2.51 8.03 -25.82 -0.21 -2.72 16 25 C -0.13 -2.54 5.67 -25.91 -0.15 -2.69 16 26 N -0.66 -7.66 5.48 -9.67 -0.05 -7.71 16 27 C 0.49 6.83 7.65 -10.82 -0.08 6.75 16 28 O -0.51 -7.91 17.01 5.54 0.09 -7.81 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.09 1.01 7.86 -51.93 -0.41 0.60 16 32 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 33 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.15 1.96 7.63 -52.49 -0.40 1.56 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.09 1.79 8.09 -51.93 -0.42 1.37 16 37 H 0.06 1.19 7.34 -51.93 -0.38 0.81 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 1.13 6.81 -51.93 -0.35 0.78 16 41 H 0.10 1.93 8.09 -51.93 -0.42 1.51 16 42 H 0.41 3.63 8.89 -40.82 -0.36 3.27 16 LS Contribution 348.07 15.07 5.25 5.25 Total: -1.00 -34.25 348.07 -7.63 -41.88 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.36 Total: 5.76 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -3.08 Total: -2.86 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.72 Total: -33.61 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -0.88 Total: -32.98 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.28 Total: 16.56 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.25 -7.63 -41.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788145555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.500 kcal (2) G-P(sol) polarization free energy of solvation -34.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds