Wall clock time and date at job start Tue Mar 31 2020 17:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46939 * 2 1 4 4 C 1.50694 * 109.47243 * 239.99388 * 2 1 3 5 5 H 1.08002 * 120.00205 * 240.00029 * 4 2 1 6 6 C 1.37874 * 120.00102 * 60.00602 * 4 2 1 7 7 N 1.31518 * 119.99931 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00094 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47089 * 89.99721 * 8 6 4 10 10 H 1.48502 * 109.46956 * 209.99308 * 8 6 4 11 11 H 1.48496 * 109.47114 * 329.99571 * 8 6 4 12 12 N 1.46505 * 109.46895 * 119.99339 * 2 1 3 13 13 C 1.46498 * 119.99754 * 60.00238 * 12 2 1 14 14 C 1.34774 * 120.00344 * 240.00293 * 12 2 1 15 15 O 1.21292 * 119.99584 * 5.35947 * 14 12 2 16 16 C 1.50700 * 120.00381 * 185.36184 * 14 12 2 17 17 H 1.09002 * 109.46700 * 320.37363 * 16 14 12 18 18 O 1.42895 * 109.46883 * 200.37812 * 16 14 12 19 19 C 1.50696 * 109.46909 * 80.37579 * 16 14 12 20 20 C 1.38254 * 120.00173 * 72.87640 * 19 16 14 21 21 C 1.38217 * 120.00127 * 179.97438 * 20 19 16 22 22 C 1.38262 * 119.99746 * 0.05276 * 21 20 19 23 23 C 1.38213 * 120.00033 * 359.94603 * 22 21 20 24 24 C 1.50699 * 119.99715 * 180.02562 * 23 22 21 25 25 F 1.39899 * 109.47176 * 270.02283 * 24 23 22 26 26 F 1.39898 * 109.47125 * 30.02139 * 24 23 22 27 27 F 1.39905 * 109.47138 * 150.02361 * 24 23 22 28 28 C 1.38211 * 119.99694 * 252.89234 * 19 16 14 29 29 H 1.08996 * 109.46713 * 60.00889 * 1 2 3 30 30 H 1.09000 * 109.46939 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47439 * 300.00419 * 1 2 3 32 32 H 0.97001 * 120.00284 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.47495 * 265.52582 * 13 12 2 34 34 H 1.08996 * 109.47411 * 25.52729 * 13 12 2 35 35 H 1.09005 * 109.46965 * 145.52911 * 13 12 2 36 36 H 0.96697 * 114.00134 * 299.99178 * 18 16 14 37 37 H 1.07997 * 119.99690 * 359.71988 * 20 19 16 38 38 H 1.07994 * 119.99871 * 179.97438 * 21 20 19 39 39 H 1.07992 * 119.99731 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.00257 * 0.02562 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6995 -0.2395 -2.4826 7 7 0.9430 0.8295 -2.6034 8 14 2.3228 -1.1199 -4.0077 9 1 1.3450 -2.1619 -4.4121 10 1 2.4875 -0.1406 -5.1119 11 1 3.6311 -1.7569 -3.7116 12 7 2.0184 -0.6905 1.1963 13 6 1.6644 -2.0930 1.4282 14 6 2.7931 -0.0355 2.0835 15 8 3.0063 1.1503 1.9431 16 6 3.3947 -0.7762 3.2499 17 1 2.6671 -1.4858 3.6438 18 8 3.7530 0.1556 4.2722 19 6 4.6241 -1.5185 2.7933 20 6 5.7839 -0.8236 2.5048 21 6 6.9117 -1.5045 2.0865 22 6 6.8796 -2.8805 1.9557 23 6 5.7201 -3.5752 2.2441 24 6 5.6853 -5.0751 2.1020 25 9 5.2865 -5.4114 0.8040 26 9 6.9600 -5.5965 2.3481 27 9 4.7772 -5.6098 3.0222 28 6 4.5921 -2.8941 2.6627 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.7091 1.1611 -3.4845 33 1 0.7821 -2.1445 2.0662 34 1 1.4520 -2.5766 0.4748 35 1 2.4958 -2.6016 1.9163 36 1 4.3988 0.8184 3.9915 37 1 5.8075 0.2517 2.6022 38 1 7.8175 -0.9615 1.8608 39 1 7.7606 -3.4124 1.6285 40 1 3.6859 -3.4369 2.8875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796141985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:35 Heat of formation + Delta-G solvation = -223.467197 kcal Electronic energy + Delta-G solvation = -29519.352312 eV Core-core repulsion = 24883.681779 eV Total energy + Delta-G solvation = -4635.670533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.18553 -48.69657 -48.65197 -41.66379 -40.05773 -37.88386 -36.87885 -34.92472 -33.23591 -32.87405 -31.32778 -28.24409 -27.54451 -27.28655 -27.05257 -23.85721 -23.35845 -22.37272 -20.45750 -19.60885 -19.48919 -19.42335 -18.74485 -18.17593 -17.80630 -17.43422 -16.85833 -16.72874 -16.19580 -15.90723 -15.55092 -15.50466 -15.18116 -15.07703 -14.91737 -14.80328 -14.79656 -14.72081 -14.40104 -14.01187 -13.95137 -13.72610 -13.55190 -13.27379 -13.12398 -12.99150 -12.81197 -12.73483 -12.62356 -12.32010 -12.22365 -12.15232 -11.87030 -11.21393 -10.74078 -10.53519 -10.28669 -9.90312 -9.38982 -8.16280 -6.32380 -0.18012 0.07794 1.39873 1.41122 1.50309 1.55710 1.64211 2.17410 2.35169 2.44942 2.66891 2.96819 3.12034 3.33095 3.40303 3.43251 3.58608 3.68966 3.91013 4.02583 4.13141 4.32682 4.36925 4.56340 4.65396 4.73725 4.75055 4.88362 4.96413 5.02248 5.05140 5.16348 5.26175 5.44809 5.53606 5.63278 5.64442 5.99418 6.13932 6.39165 6.73189 6.74672 7.20580 7.40807 8.88103 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.004776 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.877543 B = 5861.398284 C = 7202.440953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.262 3.738 3 H 0.011 0.989 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.959 3.041 9 H -0.269 1.269 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.589 5.589 13 C 0.066 3.934 14 C 0.474 3.526 15 O -0.591 6.591 16 C 0.148 3.852 17 H 0.150 0.850 18 O -0.538 6.538 19 C -0.124 4.124 20 C -0.082 4.082 21 C -0.112 4.112 22 C -0.066 4.066 23 C -0.192 4.192 24 C 0.514 3.486 25 F -0.182 7.182 26 F -0.175 7.175 27 F -0.176 7.176 28 C -0.061 4.061 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.019 0.981 32 H 0.264 0.736 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.390 0.610 37 H 0.136 0.864 38 H 0.165 0.835 39 H 0.158 0.842 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.792 -11.807 11.768 19.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.161 3.839 3 H 0.029 0.971 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.785 3.215 9 H -0.194 1.194 10 H -0.211 1.211 11 H -0.195 1.195 12 N -0.320 5.320 13 C -0.076 4.076 14 C 0.262 3.738 15 O -0.473 6.473 16 C 0.085 3.915 17 H 0.167 0.833 18 O -0.344 6.344 19 C -0.125 4.125 20 C -0.100 4.100 21 C -0.130 4.130 22 C -0.084 4.084 23 C -0.193 4.193 24 C 0.460 3.540 25 F -0.164 7.164 26 F -0.156 7.156 27 F -0.157 7.157 28 C -0.079 4.079 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.241 0.759 37 H 0.154 0.846 38 H 0.183 0.817 39 H 0.176 0.824 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 10.378 -11.486 11.896 19.523 hybrid contribution 0.301 0.099 -1.512 1.545 sum 10.680 -11.387 10.384 18.750 Atomic orbital electron populations 1.21884 0.97214 1.00160 0.99956 1.18565 0.91656 0.92249 0.81475 0.97104 1.21511 1.31856 1.12987 0.90943 0.92144 1.25675 0.95088 0.95576 1.01847 1.70018 1.37234 1.23790 1.24413 0.85537 0.78914 0.78328 0.78769 1.19424 1.21102 1.19537 1.48208 1.48460 1.13197 1.22138 1.22110 1.01360 0.80788 1.03313 1.21874 0.79352 0.87730 0.84865 1.90631 1.63020 1.17342 1.76322 1.20682 0.94225 0.90253 0.86306 0.83311 1.86560 1.66301 1.45469 1.36118 1.20095 0.95664 0.93987 1.02770 1.21453 0.92633 1.01197 0.94745 1.21436 0.99370 0.93669 0.98529 1.21308 0.97008 0.95018 0.95080 1.20001 0.98040 0.91034 1.10266 1.18196 0.73628 0.88435 0.73706 1.93244 1.90726 1.93745 1.38639 1.93185 1.39827 1.88589 1.94038 1.93193 1.67724 1.88152 1.66650 1.20929 0.98003 0.93326 0.95659 0.91366 0.93416 0.96198 0.92631 0.90738 0.90634 0.89973 0.75947 0.84577 0.81728 0.82391 0.82612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.38 8.97 71.98 0.65 -5.74 16 2 C 0.26 13.36 2.63 44.24 0.12 13.48 16 3 H 0.01 0.67 6.91 -2.39 -0.02 0.65 16 4 C -0.53 -28.37 7.96 25.60 0.20 -28.16 16 5 H 0.06 3.13 7.41 -2.91 -0.02 3.11 16 6 C 0.02 0.97 5.30 84.65 0.45 1.42 16 7 N -0.92 -52.06 11.32 21.45 0.24 -51.81 16 8 Si 0.96 42.52 29.54 68.60 2.03 44.55 16 9 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 10 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 N -0.59 -24.00 2.75 -826.77 -2.28 -26.27 16 13 C 0.07 2.01 8.82 127.77 1.13 3.14 16 14 C 0.47 18.60 6.81 87.66 0.60 19.20 16 15 O -0.59 -28.24 15.68 15.13 0.24 -28.00 16 16 C 0.15 4.13 2.89 29.10 0.08 4.22 16 17 H 0.15 3.39 6.83 -2.39 -0.02 3.37 16 18 O -0.54 -14.92 13.04 -130.78 -1.71 -16.62 16 19 C -0.12 -3.10 4.78 -19.87 -0.09 -3.19 16 20 C -0.08 -1.91 9.20 22.27 0.20 -1.71 16 21 C -0.11 -2.12 10.05 22.27 0.22 -1.90 16 22 C -0.07 -1.25 9.40 22.27 0.21 -1.04 16 23 C -0.19 -4.09 5.45 -19.87 -0.11 -4.20 16 24 C 0.51 10.75 3.36 71.24 0.24 10.99 16 25 F -0.18 -4.38 17.30 44.97 0.78 -3.60 16 26 F -0.18 -3.45 16.46 44.97 0.74 -2.71 16 27 F -0.18 -3.61 16.46 44.97 0.74 -2.87 16 28 C -0.06 -1.36 7.69 22.27 0.17 -1.19 16 29 H 0.07 3.63 6.07 -2.39 -0.01 3.61 16 30 H 0.05 2.06 7.67 -2.39 -0.02 2.04 16 31 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.07 2.50 7.09 -2.39 -0.02 2.48 16 35 H 0.08 1.98 3.36 -2.38 -0.01 1.97 16 36 H 0.39 9.50 7.35 -74.06 -0.54 8.96 16 37 H 0.14 3.03 7.11 -2.91 -0.02 3.01 16 38 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 39 H 0.16 2.21 7.60 -2.91 -0.02 2.18 16 40 H 0.16 2.82 6.12 -2.91 -0.02 2.81 16 Total: -1.00 -68.59 343.34 5.42 -63.17 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.57 Total: 18.85 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 4.07 Total: 5.32 kcal Atomic # 7 Polarization: -76.05 SS G_CDS: -2.03 Total: -78.09 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -1.47 Total: -44.63 kcal Atomic # 9 Polarization: -11.45 SS G_CDS: 2.26 Total: -9.19 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -68.59 5.42 -63.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796141985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.297 kcal (2) G-P(sol) polarization free energy of solvation -68.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds