Wall clock time and date at job start Tue Mar 31 2020 17:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47421 * 2 1 4 4 C 1.50702 * 109.47179 * 120.00182 * 2 1 3 5 5 H 1.07999 * 120.00334 * 119.99855 * 4 2 1 6 6 C 1.37878 * 119.99767 * 299.99539 * 4 2 1 7 7 N 1.31513 * 119.99980 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47101 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46690 * 120.00176 * 8 6 4 11 11 H 1.48496 * 109.47226 * 240.00482 * 8 6 4 12 12 N 1.46500 * 109.47192 * 239.99783 * 2 1 3 13 13 C 1.46499 * 120.00425 * 300.00217 * 12 2 1 14 14 C 1.34774 * 120.00098 * 119.99857 * 12 2 1 15 15 O 1.21280 * 119.99923 * 355.28349 * 14 12 2 16 16 C 1.50702 * 120.00138 * 175.55049 * 14 12 2 17 17 H 1.08994 * 109.47117 * 321.97417 * 16 14 12 18 18 O 1.42898 * 109.47227 * 201.97167 * 16 14 12 19 19 C 1.50703 * 109.46978 * 81.97556 * 16 14 12 20 20 C 1.38262 * 120.00141 * 71.40812 * 19 16 14 21 21 C 1.38203 * 120.00005 * 180.02562 * 20 19 16 22 22 C 1.38260 * 120.00250 * 359.95275 * 21 20 19 23 23 C 1.38212 * 119.99929 * 0.02562 * 22 21 20 24 24 C 1.50696 * 120.00330 * 180.02562 * 23 22 21 25 25 F 1.39909 * 109.46991 * 0.02562 * 24 23 22 26 26 F 1.39902 * 109.47395 * 119.99672 * 24 23 22 27 27 F 1.39902 * 109.47329 * 240.00052 * 24 23 22 28 28 C 1.38213 * 119.99778 * 251.13779 * 19 16 14 29 29 H 1.08997 * 109.46965 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47063 * 299.99897 * 1 2 3 31 31 H 1.09003 * 109.47105 * 60.00032 * 1 2 3 32 32 H 0.96998 * 120.00008 * 179.97438 * 7 6 4 33 33 H 1.08996 * 109.47346 * 264.75128 * 13 12 2 34 34 H 1.09005 * 109.46820 * 24.74881 * 13 12 2 35 35 H 1.08995 * 109.47616 * 144.74333 * 13 12 2 36 36 H 0.96702 * 114.00124 * 300.00122 * 18 16 14 37 37 H 1.07999 * 119.99596 * 359.97438 * 20 19 16 38 38 H 1.08004 * 120.00150 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.00543 * 180.02562 * 22 21 20 40 40 H 1.07994 * 120.00446 * 359.97438 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3214 -1.1204 4.0080 9 1 3.1464 -2.2870 3.6038 10 1 3.1466 -0.1874 4.8164 11 1 1.1661 -1.5867 4.8160 12 7 2.0183 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4280 14 6 2.7931 -0.0357 -2.0833 15 8 3.0158 1.1474 -1.9366 16 6 3.3780 -0.7721 -3.2609 17 1 3.6757 -1.7739 -2.9515 18 8 4.5206 -0.0641 -3.7459 19 6 2.3461 -0.8700 -4.3550 20 6 1.9892 0.2573 -5.0715 21 6 1.0425 0.1675 -6.0744 22 6 0.4532 -1.0496 -6.3619 23 6 0.8103 -2.1766 -5.6460 24 6 0.1684 -3.5035 -5.9596 25 9 -0.7479 -3.3428 -7.0047 26 9 1.1542 -4.4199 -6.3413 27 9 -0.4968 -3.9797 -4.8247 28 6 1.7608 -2.0878 -4.6458 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.7083 1.1609 3.4843 33 1 2.4615 -2.7357 -1.0539 34 1 0.7359 -2.3247 -0.9060 35 1 1.5324 -2.2628 -2.4966 36 1 4.3294 0.8373 -4.0393 37 1 2.4495 1.2080 -4.8468 38 1 0.7634 1.0482 -6.6339 39 1 -0.2863 -1.1199 -7.1459 40 1 2.0430 -2.9693 -4.0893 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796141991.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:43 Heat of formation + Delta-G solvation = -203.832521 kcal Electronic energy + Delta-G solvation = -29282.966250 eV Core-core repulsion = 24648.147140 eV Total energy + Delta-G solvation = -4634.819110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.35903 -47.89098 -47.79997 -40.52215 -38.85768 -36.57417 -35.28713 -33.11871 -32.30198 -31.88977 -29.58203 -27.03222 -26.39272 -25.99437 -25.24442 -22.90557 -22.18223 -21.04178 -18.91212 -18.70239 -18.66584 -18.58601 -17.21145 -16.71307 -16.49807 -16.24585 -15.63761 -15.35308 -14.77039 -14.73570 -14.53668 -14.45173 -14.26117 -14.19263 -13.97066 -13.93775 -13.69470 -13.33373 -13.13638 -12.91295 -12.68446 -12.48583 -12.30405 -11.79830 -11.66039 -11.61101 -11.38797 -11.10568 -10.91542 -10.79169 -10.75497 -10.28416 -10.22866 -9.55840 -9.44894 -9.23214 -8.75332 -8.47377 -7.72146 -6.12256 -4.20634 0.63444 0.88434 2.42560 3.00443 3.19137 3.23522 3.31849 3.34813 3.47131 3.69216 3.82882 4.20817 4.34935 4.38651 4.46675 4.49680 4.69710 4.86802 4.89426 5.09225 5.15864 5.19666 5.43482 5.47849 5.59319 5.80828 5.93546 5.96980 6.09507 6.20094 6.41124 6.69595 6.74678 6.98029 7.29683 7.39207 7.49359 7.65372 7.94161 8.11471 8.39101 8.70262 8.88488 9.46152 10.93106 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.015209 B = 0.003602 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.608260 B = 7771.258887 C = 8582.942899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.581 5.581 13 C 0.073 3.927 14 C 0.483 3.517 15 O -0.545 6.545 16 C 0.131 3.869 17 H 0.127 0.873 18 O -0.532 6.532 19 C -0.108 4.108 20 C -0.070 4.070 21 C -0.115 4.115 22 C -0.071 4.071 23 C -0.183 4.183 24 C 0.510 3.490 25 F -0.178 7.178 26 F -0.177 7.177 27 F -0.173 7.173 28 C -0.056 4.056 29 H 0.031 0.969 30 H 0.094 0.906 31 H 0.011 0.989 32 H 0.263 0.737 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.382 0.618 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.669 -6.436 -19.101 20.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.566 4.566 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.313 5.313 13 C -0.071 4.071 14 C 0.268 3.732 15 O -0.424 6.424 16 C 0.068 3.932 17 H 0.144 0.856 18 O -0.337 6.337 19 C -0.109 4.109 20 C -0.088 4.088 21 C -0.133 4.133 22 C -0.089 4.089 23 C -0.185 4.185 24 C 0.455 3.545 25 F -0.160 7.160 26 F -0.158 7.158 27 F -0.155 7.155 28 C -0.074 4.074 29 H 0.050 0.950 30 H 0.113 0.887 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.231 0.769 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.366 -6.293 -18.712 19.789 hybrid contribution -0.230 -0.347 0.804 0.905 sum -1.596 -6.640 -17.908 19.166 Atomic orbital electron populations 1.22091 0.98058 0.99445 1.00894 1.19011 0.91024 0.94492 0.79783 0.91862 1.21342 1.31952 1.13079 0.90195 0.92143 1.24893 0.94875 0.94952 0.99016 1.69884 1.36280 1.22616 1.23745 0.86422 0.78618 0.79607 0.82661 1.19765 1.20876 1.20897 1.48255 1.47884 1.11754 1.23368 1.21856 1.02115 0.83181 0.99936 1.20881 0.79969 0.87995 0.84318 1.90659 1.60652 1.15209 1.75926 1.20810 0.85207 0.97656 0.89515 0.85561 1.86607 1.31591 1.31301 1.84246 1.20266 0.98996 0.93578 0.98066 1.21265 0.95434 0.98409 0.93663 1.21135 0.96638 0.97555 0.97975 1.21038 0.98338 0.91506 0.98013 1.19892 1.03115 0.92706 1.02752 1.18266 0.76415 0.85402 0.74368 1.93161 1.68182 1.95618 1.59014 1.93223 1.61932 1.69335 1.91311 1.93247 1.81468 1.89734 1.51010 1.20752 0.93858 0.98131 0.94650 0.95036 0.88706 0.96996 0.92681 0.92931 0.90008 0.92876 0.76862 0.84621 0.84420 0.84321 0.84188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.96 37.16 0.33 -3.11 16 2 C 0.26 6.41 2.63 -69.08 -0.18 6.23 16 3 H 0.06 1.84 6.91 -51.93 -0.36 1.48 16 4 C -0.53 -14.01 8.37 -34.44 -0.29 -14.30 16 5 H 0.06 1.59 7.65 -52.49 -0.40 1.18 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.76 11.32 55.43 0.63 -24.13 16 8 Si 0.90 20.83 29.54 -169.99 -5.02 15.80 16 9 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.58 -11.94 2.75 -175.26 -0.48 -12.42 16 13 C 0.07 1.18 8.91 59.85 0.53 1.71 16 14 C 0.48 9.46 6.78 -10.99 -0.07 9.39 16 15 O -0.55 -12.57 15.69 -13.29 -0.21 -12.78 16 16 C 0.13 1.92 2.89 -29.03 -0.08 1.83 16 17 H 0.13 1.67 7.13 -51.93 -0.37 1.30 16 18 O -0.53 -7.76 13.07 -54.08 -0.71 -8.47 16 19 C -0.11 -1.34 4.61 -104.62 -0.48 -1.82 16 20 C -0.07 -0.78 9.17 -39.59 -0.36 -1.14 16 21 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 22 C -0.07 -0.67 9.43 -39.58 -0.37 -1.04 16 23 C -0.18 -1.95 5.37 -104.62 -0.56 -2.51 16 24 C 0.51 5.36 3.32 36.00 0.12 5.48 16 25 F -0.18 -1.81 15.97 2.25 0.04 -1.77 16 26 F -0.18 -1.89 17.23 2.25 0.04 -1.86 16 27 F -0.17 -1.99 17.24 2.25 0.04 -1.95 16 28 C -0.06 -0.63 7.44 -39.58 -0.29 -0.92 16 29 H 0.03 0.68 6.67 -51.93 -0.35 0.34 16 30 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 31 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.37 6.44 -51.93 -0.33 1.04 16 35 H 0.05 0.70 3.53 -51.93 -0.18 0.52 16 36 H 0.38 4.69 7.40 45.56 0.34 5.03 16 37 H 0.14 1.41 7.17 -52.49 -0.38 1.04 16 38 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 39 H 0.14 1.03 7.16 -52.49 -0.38 0.65 16 40 H 0.14 1.36 6.99 -52.49 -0.37 0.99 16 LS Contribution 343.10 15.07 5.17 5.17 Total: -1.00 -31.27 343.10 -6.21 -37.48 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -3.49 Total: 4.94 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -2.21 Total: -0.01 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.14 Total: -36.55 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.92 Total: -21.25 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 0.11 Total: -5.58 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.27 -6.21 -37.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796141991.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.352 kcal (2) G-P(sol) polarization free energy of solvation -31.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds