Wall clock time and date at job start Tue Mar 31 2020 16:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34334 * 126.44110 * 2 1 4 4 N 1.34485 * 107.66524 * 179.77107 * 3 2 1 5 5 C 1.30252 * 108.70192 * 0.41748 * 4 3 2 6 6 C 1.50702 * 125.62140 * 179.83771 * 5 4 3 7 7 O 1.42896 * 109.47212 * 89.69760 * 6 5 4 8 8 C 1.42891 * 114.00224 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47422 * 180.02562 * 8 7 6 10 10 O 1.20837 * 119.99532 * 359.97438 * 9 8 7 11 11 O 1.34225 * 120.00307 * 179.97438 * 9 8 7 12 12 C 1.45202 * 117.00183 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47552 * 180.02562 * 12 11 9 14 14 C 1.38629 * 119.75027 * 269.73074 * 13 12 11 15 15 C 1.37616 * 120.24726 * 179.71859 * 14 13 12 16 16 C 1.40713 * 119.74816 * 0.56746 * 15 14 13 17 17 C 1.41394 * 120.25067 * 179.67957 * 16 15 14 18 18 H 1.07997 * 120.00652 * 204.40025 * 17 16 15 19 19 C 1.39949 * 119.99607 * 24.40527 * 17 16 15 20 20 N 1.30829 * 120.00062 * 17.85475 * 19 17 16 21 21 Si 1.86798 * 120.00043 * 197.85528 * 19 17 16 22 22 H 1.48500 * 109.46985 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47140 * 119.99988 * 21 19 17 24 24 H 1.48498 * 109.47251 * 239.99840 * 21 19 17 25 25 C 1.40718 * 119.50848 * 359.70557 * 16 15 14 26 26 C 1.37619 * 119.74534 * 0.02562 * 25 16 15 27 27 O 1.33967 * 108.76055 * 359.58291 * 5 4 3 28 28 H 1.09002 * 109.47051 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46902 * 299.99818 * 1 2 3 30 30 H 1.08996 * 109.47406 * 59.99772 * 1 2 3 31 31 H 1.07995 * 126.16649 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.46860 * 329.70034 * 6 5 4 33 33 H 1.08999 * 109.47055 * 209.70243 * 6 5 4 34 34 H 1.08990 * 109.47459 * 60.00037 * 8 7 6 35 35 H 1.09005 * 109.46981 * 299.99524 * 8 7 6 36 36 H 1.09005 * 109.46800 * 59.99833 * 12 11 9 37 37 H 1.09001 * 109.47228 * 300.00595 * 12 11 9 38 38 H 1.08005 * 119.87755 * 359.97064 * 14 13 12 39 39 H 1.08008 * 120.12622 * 180.27959 * 15 14 13 40 40 H 0.96994 * 119.99970 * 179.97438 * 20 19 17 41 41 H 1.07995 * 120.12697 * 179.97438 * 25 16 15 42 42 H 1.08000 * 119.87543 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0807 0.0000 4 7 3.5782 0.6478 0.0051 5 6 3.5766 -0.6547 -0.0008 6 6 4.8005 -1.5340 -0.0014 7 8 5.1878 -1.8122 1.3456 8 6 6.3450 -2.6429 1.4578 9 6 6.6608 -2.8705 2.9137 10 8 5.9662 -2.3720 3.7676 11 8 7.7135 -3.6270 3.2619 12 6 7.9573 -3.8037 4.6824 13 6 9.1711 -4.6748 4.8793 14 6 9.0229 -6.0499 4.9736 15 6 10.1249 -6.8556 5.1477 16 6 11.4044 -6.2777 5.2419 17 6 12.5432 -7.0950 5.4276 18 1 13.4332 -6.6859 5.8823 19 6 12.5170 -8.4341 5.0219 20 7 11.6078 -8.8434 4.1749 21 14 13.7802 -9.6373 5.6899 22 1 14.6914 -8.9298 6.6250 23 1 13.0860 -10.7343 6.4109 24 1 14.5669 -10.2042 4.5653 25 6 11.5422 -4.8803 5.1505 26 6 10.4268 -4.0945 4.9709 27 8 2.3075 -1.0839 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.9821 2.1113 0.0004 32 1 5.6146 -1.0230 -0.5154 33 1 4.5761 -2.4686 -0.5155 34 1 7.1911 -2.1546 0.9743 35 1 6.1531 -3.6006 0.9741 36 1 7.0907 -4.2776 5.1435 37 1 8.1290 -2.8318 5.1452 38 1 8.0393 -6.4910 4.9061 39 1 10.0076 -7.9271 5.2164 40 1 11.5898 -9.7715 3.8935 41 1 12.5194 -4.4262 5.2219 42 1 10.5302 -3.0218 4.9000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797228973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:08 Heat of formation + Delta-G solvation = -107.574264 kcal Electronic energy + Delta-G solvation = -25793.836587 eV Core-core repulsion = 21705.048288 eV Total energy + Delta-G solvation = -4088.788298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.41780 -41.53160 -39.59073 -39.04351 -37.41632 -35.86489 -35.69002 -33.75329 -32.67765 -31.24720 -30.94888 -29.37546 -28.28078 -26.17812 -25.47210 -23.40581 -22.95869 -22.39025 -22.16626 -21.79538 -19.27511 -19.07226 -18.40099 -18.09671 -17.91926 -17.61958 -17.19220 -16.94459 -16.60722 -16.13156 -15.71685 -15.54238 -15.40713 -15.17904 -14.47194 -14.27500 -14.06265 -13.93168 -13.87717 -13.82628 -13.54456 -13.32382 -13.24460 -13.06443 -12.84369 -12.68738 -12.60580 -12.47435 -12.10070 -11.73989 -11.66425 -11.62935 -11.41321 -11.28997 -11.04498 -10.99215 -9.78282 -9.44146 -9.33662 -8.69132 -6.39851 0.18273 0.68988 1.10647 1.12313 1.24003 1.39629 1.46642 1.54862 1.62051 1.79672 2.19866 2.64890 2.81563 3.28632 3.60008 3.75829 3.79738 3.99185 4.05944 4.07642 4.09099 4.15643 4.20029 4.23348 4.45621 4.47463 4.50666 4.55096 4.60710 4.67443 4.98037 5.00952 5.12113 5.13661 5.24848 5.30236 5.38909 5.45071 5.65112 5.71732 5.88107 6.05738 6.14156 6.31799 6.60955 6.64335 6.72223 6.88449 6.96898 8.27686 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.033920 B = 0.001608 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.265092 B =17408.026303 C =17649.255986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.038 4.038 3 C -0.067 4.067 4 N -0.489 5.489 5 C 0.164 3.836 6 C 0.160 3.840 7 O -0.398 6.398 8 C 0.077 3.923 9 C 0.454 3.546 10 O -0.538 6.538 11 O -0.354 6.354 12 C 0.142 3.858 13 C -0.232 4.232 14 C -0.079 4.079 15 C -0.193 4.193 16 C 0.087 3.913 17 C -0.492 4.492 18 H 0.080 0.920 19 C 0.036 3.964 20 N -0.817 5.817 21 Si 0.984 3.016 22 H -0.257 1.257 23 H -0.264 1.264 24 H -0.264 1.264 25 C -0.245 4.245 26 C -0.064 4.064 27 O -0.209 6.209 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.211 0.789 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.291 0.709 41 H 0.103 0.897 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.233 11.471 -11.919 23.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.091 4.091 3 C -0.206 4.206 4 N -0.220 5.220 5 C -0.042 4.042 6 C 0.084 3.916 7 O -0.317 6.317 8 C 0.001 3.999 9 C 0.298 3.702 10 O -0.428 6.428 11 O -0.271 6.271 12 C 0.070 3.930 13 C -0.233 4.233 14 C -0.098 4.098 15 C -0.213 4.213 16 C 0.085 3.915 17 C -0.520 4.520 18 H 0.098 0.902 19 C -0.180 4.180 20 N -0.442 5.442 21 Si 0.804 3.196 22 H -0.181 1.181 23 H -0.189 1.189 24 H -0.189 1.189 25 C -0.264 4.264 26 C -0.082 4.082 27 O -0.096 6.096 28 H 0.101 0.899 29 H 0.125 0.875 30 H 0.133 0.867 31 H 0.227 0.773 32 H 0.141 0.859 33 H 0.135 0.865 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.045 11.762 -11.601 23.737 hybrid contribution 0.043 -0.933 0.399 1.015 sum -17.002 10.829 -11.202 23.061 Atomic orbital electron populations 1.20566 0.80601 1.05418 1.05917 1.24456 0.96878 0.83784 1.04000 1.23622 0.86987 1.02106 1.07848 1.70390 1.24951 1.09876 1.16798 1.26067 0.84672 0.90209 1.03207 1.20831 0.88919 0.98085 0.83728 1.87936 1.46302 1.70482 1.26993 1.21939 0.90472 0.98825 0.88652 1.23971 0.77854 0.75014 0.93319 1.90659 1.50092 1.48265 1.53776 1.86640 1.45774 1.63842 1.30863 1.21588 0.95830 0.98819 0.76778 1.18968 0.93425 0.93192 1.17713 1.20779 0.97565 0.93094 0.98342 1.21263 0.92219 0.99054 1.08721 1.18059 0.93507 0.92403 0.87567 1.19959 1.00006 0.95726 1.36344 0.90230 1.26814 0.98418 1.00427 0.92382 1.69873 1.32758 1.18905 1.22678 0.85129 0.77976 0.77314 0.79147 1.18090 1.18866 1.18916 1.21177 0.97547 0.93866 1.13815 1.20717 0.91855 0.98567 0.97103 1.84404 1.18059 1.37664 1.69478 0.89861 0.87492 0.86731 0.77260 0.85930 0.86472 0.84984 0.84937 0.91375 0.90959 0.87485 0.87731 0.89832 0.87887 0.86383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.43 71.24 0.74 0.27 16 2 C -0.04 -0.65 7.39 24.79 0.18 -0.47 16 3 C -0.07 -1.27 11.80 83.39 0.98 -0.29 16 4 N -0.49 -12.18 11.29 -303.83 -3.43 -15.61 16 5 C 0.16 3.76 7.97 88.34 0.70 4.46 16 6 C 0.16 2.62 6.56 71.24 0.47 3.09 16 7 O -0.40 -9.58 9.86 -129.90 -1.28 -10.86 16 8 C 0.08 1.52 6.53 71.24 0.47 1.98 16 9 C 0.45 14.05 8.03 71.24 0.57 14.62 16 10 O -0.54 -20.70 16.25 28.36 0.46 -20.24 16 11 O -0.35 -12.15 10.20 -51.37 -0.52 -12.67 16 12 C 0.14 5.20 5.58 71.23 0.40 5.60 16 13 C -0.23 -9.94 5.54 -19.68 -0.11 -10.04 16 14 C -0.08 -3.66 9.67 22.22 0.21 -3.45 16 15 C -0.19 -10.05 8.70 22.73 0.20 -9.85 16 16 C 0.09 4.65 5.57 -21.29 -0.12 4.53 16 17 C -0.49 -25.95 9.05 23.46 0.21 -25.73 16 18 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 19 C 0.04 1.75 5.14 85.26 0.44 2.19 16 20 N -0.82 -41.59 10.95 21.83 0.24 -41.36 16 21 Si 0.98 36.95 29.60 68.60 2.03 38.98 16 22 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 23 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 24 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 25 C -0.24 -11.83 9.80 22.73 0.22 -11.61 16 26 C -0.06 -2.79 9.67 22.22 0.21 -2.57 16 27 O -0.21 -4.65 10.78 -3.72 -0.04 -4.69 16 28 H 0.08 0.54 8.14 -2.39 -0.02 0.53 16 29 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.21 2.49 8.06 -2.91 -0.02 2.47 16 32 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.13 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.07 2.42 8.07 -2.38 -0.02 2.40 16 37 H 0.07 2.51 8.07 -2.39 -0.02 2.49 16 38 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 39 H 0.10 5.66 6.16 -2.91 -0.02 5.64 16 40 H 0.29 13.25 8.30 -92.71 -0.77 12.48 16 41 H 0.10 4.67 8.06 -2.91 -0.02 4.64 16 42 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -74.39 375.42 4.29 -70.11 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 1.04 Total: 23.61 kcal Atomic # 6 Polarization: -33.06 SS G_CDS: 5.79 Total: -27.26 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -3.19 Total: -56.96 kcal Atomic # 8 Polarization: -47.08 SS G_CDS: -1.38 Total: -48.47 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.98 kcal Total: -74.39 4.29 -70.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797228973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.466 kcal (2) G-P(sol) polarization free energy of solvation -74.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds