Wall clock time and date at job start Tue Mar 31 2020 17:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46849 * 2 1 4 4 O 1.45205 * 109.47355 * 240.00473 * 2 1 3 5 5 C 1.34746 * 117.00108 * 89.99499 * 4 2 1 6 6 O 1.21505 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.47470 * 119.99865 * 180.02562 * 5 4 2 8 8 C 1.39836 * 120.06541 * 359.72804 * 7 5 4 9 9 C 1.37610 * 119.93052 * 179.71819 * 8 7 5 10 10 C 1.39277 * 120.06612 * 0.55536 * 9 8 7 11 11 N 1.39071 * 119.93386 * 179.69878 * 10 9 8 12 12 C 1.34776 * 120.00148 * 213.67030 * 11 10 9 13 13 O 1.21727 * 119.99980 * 5.26925 * 12 11 10 14 14 C 1.46193 * 120.00022 * 185.27958 * 12 11 10 15 15 H 1.08005 * 120.00225 * 359.97438 * 14 12 11 16 16 C 1.40126 * 119.99906 * 179.97438 * 14 12 11 17 17 N 1.30638 * 120.00261 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 120.00088 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46903 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47276 * 120.00174 * 18 16 14 21 21 H 1.48496 * 109.47141 * 240.00764 * 18 16 14 22 22 C 1.39277 * 120.13160 * 359.71731 * 10 9 8 23 23 C 1.37598 * 120.06821 * 0.02562 * 22 10 9 24 24 C 1.50693 * 109.47548 * 119.99931 * 2 1 3 25 25 O 1.20766 * 120.00128 * 104.99666 * 24 2 1 26 26 C 1.50699 * 120.00157 * 285.00266 * 24 2 1 27 27 C 1.52999 * 117.50027 * 223.74359 * 26 24 2 28 28 C 1.53004 * 117.50084 * 155.08349 * 26 24 2 29 29 H 1.09006 * 109.46849 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47205 * 299.99364 * 1 2 3 31 31 H 1.08995 * 109.47445 * 59.99935 * 1 2 3 32 32 H 1.08004 * 120.03393 * 359.97239 * 8 7 5 33 33 H 1.07994 * 119.96582 * 180.26851 * 9 8 7 34 34 H 0.96998 * 119.99530 * 33.66050 * 11 10 9 35 35 H 0.96999 * 120.00110 * 179.97438 * 17 16 14 36 36 H 1.07997 * 119.95889 * 179.97438 * 22 10 9 37 37 H 1.08004 * 120.03136 * 179.97438 * 23 22 10 38 38 H 1.08997 * 115.54944 * 9.41447 * 26 24 2 39 39 H 1.08999 * 117.49831 * 0.02562 * 27 26 24 40 40 H 1.09000 * 117.49638 * 145.01891 * 27 26 24 41 41 H 1.09003 * 117.49897 * 214.98068 * 28 26 24 42 42 H 1.09002 * 117.49510 * 0.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2179 0.0670 -2.2854 6 8 1.9977 1.2616 -2.2545 7 6 2.7083 -0.5604 -3.5266 8 6 2.9676 -1.9340 -3.5621 9 6 3.4196 -2.5176 -4.7235 10 6 3.6299 -1.7396 -5.8594 11 7 4.0927 -2.3312 -7.0298 12 6 4.9102 -1.6460 -7.8536 13 8 5.3204 -0.5471 -7.5283 14 6 5.3040 -2.2225 -9.1381 15 1 4.9402 -3.1976 -9.4267 16 6 6.1534 -1.5098 -9.9949 17 7 6.5939 -0.3305 -9.6457 18 14 6.6572 -2.2466 -11.6359 19 1 6.0282 -3.5826 -11.7926 20 1 6.2087 -1.3566 -12.7367 21 1 8.1349 -2.3862 -11.6830 22 6 3.3779 -0.3703 -5.8254 23 6 2.9208 0.2181 -4.6686 24 6 2.0324 -0.7103 1.2304 25 8 2.4889 -1.8248 1.1402 26 6 1.9651 -0.0301 2.5735 27 6 3.1908 -0.1390 3.4827 28 6 1.9185 -0.9222 3.8156 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.8094 -2.5370 -2.6801 33 1 3.6159 -3.5792 -4.7528 34 1 3.8273 -3.2371 -7.2531 35 1 7.1822 0.1626 -10.2386 36 1 3.5423 0.2304 -6.7077 37 1 2.7259 1.2801 -4.6427 38 1 1.3991 0.9010 2.6010 39 1 4.0460 -0.7022 3.1092 40 1 3.4310 0.7204 4.1086 41 1 1.3221 -0.5778 4.6605 42 1 1.9369 -2.0011 3.6614 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798569110.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:07 Heat of formation + Delta-G solvation = -108.424074 kcal Electronic energy + Delta-G solvation = -26694.572396 eV Core-core repulsion = 22605.747247 eV Total energy + Delta-G solvation = -4088.825149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.87129 -39.90940 -39.10464 -37.11273 -36.59320 -36.14777 -33.68452 -32.61394 -32.42105 -30.54573 -29.50463 -26.60102 -26.33854 -24.34675 -22.97219 -22.85279 -22.24723 -20.80984 -19.88739 -19.67999 -18.07013 -17.68608 -17.40937 -16.69616 -16.23537 -16.06949 -15.60169 -15.48101 -14.98655 -14.64855 -14.50694 -14.13548 -13.95311 -13.49830 -13.32214 -13.20475 -12.98221 -12.79340 -12.70097 -12.62236 -12.14452 -12.02548 -11.89095 -11.77022 -11.36018 -11.18730 -11.15214 -11.00931 -10.95958 -10.82061 -10.69395 -10.43876 -10.38451 -9.82660 -9.51520 -9.01497 -8.62909 -7.90466 -7.32206 -6.45445 -4.93448 1.11226 1.41815 1.86306 2.40319 2.80252 3.01254 3.09430 3.13790 3.34695 3.53426 3.90341 4.11777 4.24531 4.38963 4.40623 4.45669 4.51296 4.56994 4.66328 4.78148 4.87141 5.13896 5.20508 5.30186 5.32643 5.35758 5.39608 5.48867 5.51709 5.62109 5.71981 5.76675 5.91455 6.07162 6.28647 6.43757 6.59742 6.82686 6.88636 7.10583 7.15520 7.20820 7.57737 7.86103 7.88680 8.02118 8.74346 9.03493 10.23846 10.44668 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.031045 B = 0.001976 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.695608 B =14167.643037 C =14349.698666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.044 3.956 3 H 0.113 0.887 4 O -0.335 6.335 5 C 0.518 3.482 6 O -0.519 6.519 7 C -0.189 4.189 8 C -0.033 4.033 9 C -0.196 4.196 10 C 0.238 3.762 11 N -0.694 5.694 12 C 0.537 3.463 13 O -0.555 6.555 14 C -0.535 4.535 15 H 0.074 0.926 16 C 0.085 3.915 17 N -0.756 5.756 18 Si 0.915 3.085 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.148 4.148 23 C -0.027 4.027 24 C 0.386 3.614 25 O -0.428 6.428 26 C -0.220 4.220 27 C -0.147 4.147 28 C -0.149 4.149 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.397 0.603 35 H 0.273 0.727 36 H 0.148 0.852 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.008 -1.034 20.774 23.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.012 4.012 3 H 0.131 0.869 4 O -0.252 6.252 5 C 0.365 3.635 6 O -0.409 6.409 7 C -0.192 4.192 8 C -0.052 4.052 9 C -0.217 4.217 10 C 0.136 3.864 11 N -0.335 5.335 12 C 0.345 3.655 13 O -0.436 6.436 14 C -0.570 4.570 15 H 0.093 0.907 16 C -0.137 4.137 17 N -0.383 5.383 18 Si 0.739 3.261 19 H -0.186 1.186 20 H -0.199 1.199 21 H -0.199 1.199 22 C -0.169 4.169 23 C -0.047 4.047 24 C 0.260 3.740 25 O -0.299 6.299 26 C -0.239 4.239 27 C -0.184 4.184 28 C -0.186 4.186 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.231 0.769 35 H 0.084 0.916 36 H 0.166 0.834 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.355 -0.352 20.799 23.237 hybrid contribution 0.087 -0.515 -0.885 1.028 sum -10.269 -0.867 19.914 22.423 Atomic orbital electron populations 1.22067 0.91680 1.03911 1.04196 1.22979 0.96504 0.98605 0.83152 0.86902 1.86717 1.77515 1.41394 1.19571 1.21383 0.73692 0.84956 0.83427 1.90785 1.49870 1.16018 1.84246 1.18735 1.14275 0.94616 0.91547 1.21075 0.93596 0.93112 0.97430 1.20869 1.08570 1.00378 0.91901 1.18309 0.88357 0.92786 0.86951 1.44320 1.49818 1.18636 1.20732 1.18484 0.77590 0.85241 0.84203 1.90660 1.56692 1.21104 1.75144 1.20910 1.30787 1.05020 1.00326 0.90730 1.25772 0.94266 0.94182 0.99461 1.69982 1.23285 1.10031 1.35040 0.86188 0.78861 0.79920 0.81149 1.18568 1.19901 1.19923 1.21293 1.01426 0.94608 0.99554 1.21036 0.93524 0.99551 0.90540 1.23652 0.74355 0.86662 0.89374 1.90430 1.32971 1.18791 1.87663 1.22705 1.06866 1.03594 0.90726 1.23018 0.91765 1.03177 1.00481 1.23014 1.00669 0.98893 0.96008 0.91007 0.90047 0.90378 0.85060 0.85537 0.76873 0.91579 0.83437 0.85108 0.85295 0.87805 0.87389 0.87532 0.87608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.52 37.16 0.35 -1.02 16 2 C 0.04 0.49 2.92 -27.89 -0.08 0.41 16 3 H 0.11 1.20 7.16 -51.93 -0.37 0.83 16 4 O -0.33 -4.89 8.70 -47.18 -0.41 -5.30 16 5 C 0.52 8.46 7.86 34.49 0.27 8.73 16 6 O -0.52 -9.09 15.60 -19.27 -0.30 -9.39 16 7 C -0.19 -3.25 5.88 -104.94 -0.62 -3.86 16 8 C -0.03 -0.53 9.60 -39.21 -0.38 -0.90 16 9 C -0.20 -3.26 9.94 -39.42 -0.39 -3.65 16 10 C 0.24 4.76 6.27 -83.80 -0.53 4.24 16 11 N -0.69 -14.77 5.30 -11.18 -0.06 -14.83 16 12 C 0.54 14.30 7.46 -13.07 -0.10 14.20 16 13 O -0.55 -16.73 12.69 5.16 0.07 -16.66 16 14 C -0.53 -14.05 9.54 -35.68 -0.34 -14.39 16 15 H 0.07 1.77 7.85 -52.48 -0.41 1.36 16 16 C 0.08 2.22 5.50 -17.35 -0.10 2.13 16 17 N -0.76 -21.36 11.82 55.55 0.66 -20.70 16 18 Si 0.91 18.94 29.56 -169.99 -5.02 13.91 16 19 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 C -0.15 -3.07 8.62 -39.43 -0.34 -3.41 16 23 C -0.03 -0.50 9.58 -39.22 -0.38 -0.88 16 24 C 0.39 4.09 6.21 -29.04 -0.18 3.91 16 25 O -0.43 -5.96 16.64 -13.23 -0.22 -6.18 16 26 C -0.22 -1.54 6.11 -91.77 -0.56 -2.10 16 27 C -0.15 -0.95 10.14 -26.69 -0.27 -1.22 16 28 C -0.15 -0.90 10.05 -26.69 -0.27 -1.17 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.13 1.84 7.60 -52.48 -0.40 1.44 16 33 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.40 7.08 8.79 -40.82 -0.36 6.72 16 35 H 0.27 6.97 8.29 -40.82 -0.34 6.64 16 36 H 0.15 3.45 6.41 -52.49 -0.34 3.11 16 37 H 0.13 2.27 7.64 -52.48 -0.40 1.87 16 38 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.11 0.76 7.89 -51.93 -0.41 0.35 16 LS Contribution 373.54 15.07 5.63 5.63 Total: -1.00 -34.12 373.54 -8.76 -42.88 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.20 Total: 9.64 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -3.90 Total: 1.00 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.60 Total: -35.52 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -0.87 Total: -37.54 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.91 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.12 -8.76 -42.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798569110.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.542 kcal (2) G-P(sol) polarization free energy of solvation -34.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds