Wall clock time and date at job start Tue Mar 31 2020 17:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47047 * 2 1 4 4 O 1.45200 * 109.46796 * 119.99654 * 2 1 3 5 5 C 1.34752 * 117.00135 * 270.00103 * 4 2 1 6 6 O 1.21513 * 119.99805 * 0.02562 * 5 4 2 7 7 C 1.47467 * 120.00087 * 180.02562 * 5 4 2 8 8 C 1.39840 * 120.06701 * 179.97438 * 7 5 4 9 9 C 1.37607 * 119.93135 * 180.22740 * 8 7 5 10 10 C 1.39274 * 120.06466 * 359.52445 * 9 8 7 11 11 N 1.39069 * 119.92960 * 180.22911 * 10 9 8 12 12 C 1.34775 * 120.00024 * 145.05147 * 11 10 9 13 13 O 1.21719 * 119.99873 * 4.56409 * 12 11 10 14 14 C 1.46200 * 120.00041 * 184.56167 * 12 11 10 15 15 H 1.08002 * 119.99719 * 0.02562 * 14 12 11 16 16 C 1.40120 * 120.00239 * 180.02562 * 14 12 11 17 17 N 1.30642 * 119.99831 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00349 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47185 * 59.99980 * 18 16 14 20 20 H 1.48497 * 109.46954 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.46892 * 300.00123 * 18 16 14 22 22 C 1.39264 * 120.13546 * 0.45814 * 10 9 8 23 23 C 1.37611 * 120.07011 * 359.79051 * 22 10 9 24 24 C 1.50698 * 109.47582 * 239.99599 * 2 1 3 25 25 O 1.20754 * 120.00253 * 260.00112 * 24 2 1 26 26 C 1.50700 * 119.99769 * 80.00140 * 24 2 1 27 27 C 1.52999 * 117.49899 * 223.75119 * 26 24 2 28 28 C 1.52997 * 117.50110 * 155.09193 * 26 24 2 29 29 H 1.09000 * 109.47047 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47528 * 300.00229 * 1 2 3 31 31 H 1.09006 * 109.46621 * 60.00588 * 1 2 3 32 32 H 1.08007 * 120.03268 * 359.96084 * 8 7 5 33 33 H 1.08000 * 119.96598 * 179.74638 * 9 8 7 34 34 H 0.97005 * 120.00121 * 325.04568 * 11 10 9 35 35 H 0.96997 * 119.99981 * 180.02562 * 17 16 14 36 36 H 1.08004 * 119.96436 * 179.77478 * 22 10 9 37 37 H 1.08005 * 120.03492 * 179.97438 * 23 22 10 38 38 H 1.09001 * 115.55335 * 9.41449 * 26 24 2 39 39 H 1.09003 * 117.49976 * 359.97438 * 27 26 24 40 40 H 1.08999 * 117.50274 * 145.01995 * 27 26 24 41 41 H 1.08997 * 117.50210 * 214.98162 * 28 26 24 42 42 H 1.09000 * 117.49650 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6844 1.1856 5 6 2.2178 0.0670 2.2854 6 8 1.9967 1.2615 2.2547 7 6 2.7091 -0.5602 3.5263 8 6 2.9217 0.2184 4.6683 9 6 3.3847 -0.3690 5.8234 10 6 3.6321 -1.7392 5.8587 11 7 4.0955 -2.3307 7.0289 12 6 3.7022 -3.5778 7.3550 13 8 3.0089 -4.2179 6.5862 14 6 4.1086 -4.1619 8.6322 15 1 4.7235 -3.5938 9.3145 16 6 3.7002 -5.4588 8.9711 17 7 2.9568 -6.1461 8.1455 18 14 4.2187 -6.2048 10.6032 19 1 3.7069 -5.3653 11.7161 20 1 3.6601 -7.5757 10.7206 21 1 5.7009 -6.2662 10.6707 22 6 3.4210 -2.5172 4.7231 23 6 2.9630 -1.9348 3.5635 24 6 2.0324 -0.7105 -1.2304 25 8 2.4049 -1.8567 -1.1559 26 6 2.0700 0.0096 -2.5537 27 6 1.5795 -0.7521 -3.7866 28 6 3.0744 -0.4826 -3.5975 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 2.7268 1.2804 4.6425 33 1 3.5530 0.2325 6.7045 34 1 4.7017 -1.8456 7.6104 35 1 2.6738 -7.0437 8.3802 36 1 3.6173 -3.5789 4.7525 37 1 2.7999 -2.5387 2.6831 38 1 1.8715 1.0806 -2.5120 39 1 1.2301 -1.7742 -3.6407 40 1 1.0589 -0.1823 -4.5562 41 1 3.5366 0.2645 -4.2427 42 1 3.7084 -1.3270 -3.3270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798569211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:11 Heat of formation + Delta-G solvation = -107.431468 kcal Electronic energy + Delta-G solvation = -26770.152683 eV Core-core repulsion = 22681.370577 eV Total energy + Delta-G solvation = -4088.782106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.85345 -39.89574 -39.09971 -37.11674 -36.57066 -36.12613 -33.68422 -32.62472 -32.34518 -30.53119 -29.50084 -26.58864 -26.37438 -24.34619 -22.89529 -22.72961 -22.28745 -20.87437 -19.83161 -19.68215 -18.00968 -17.75922 -17.37006 -16.65881 -16.22878 -16.04614 -15.65177 -15.35201 -15.15120 -14.53999 -14.46620 -14.10832 -13.89433 -13.51713 -13.25552 -13.19464 -13.00970 -12.80171 -12.69813 -12.56720 -12.06461 -11.99956 -11.95570 -11.75226 -11.37649 -11.14637 -11.13314 -10.98684 -10.92985 -10.80620 -10.69376 -10.44508 -10.42835 -9.79000 -9.48700 -8.99279 -8.61871 -7.86283 -7.34933 -6.44156 -4.92762 1.10734 1.44260 1.86721 2.44326 2.80076 3.04277 3.09473 3.11345 3.36220 3.56989 3.90993 4.13831 4.26839 4.39342 4.41776 4.46030 4.53955 4.58577 4.72603 4.79477 4.89717 5.15454 5.24102 5.32114 5.33830 5.36708 5.42284 5.50461 5.52213 5.64918 5.77073 5.77521 5.91679 6.08313 6.27273 6.45704 6.67051 6.79670 6.92113 7.14365 7.16708 7.22445 7.57460 7.87683 7.87838 8.02083 8.74850 9.04249 10.24585 10.45556 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.022006 B = 0.002145 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.073557 B =13051.116207 C =13818.192995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.045 3.955 3 H 0.111 0.889 4 O -0.333 6.333 5 C 0.519 3.481 6 O -0.523 6.523 7 C -0.188 4.188 8 C -0.027 4.027 9 C -0.193 4.193 10 C 0.235 3.765 11 N -0.694 5.694 12 C 0.538 3.462 13 O -0.555 6.555 14 C -0.535 4.535 15 H 0.073 0.927 16 C 0.085 3.915 17 N -0.756 5.756 18 Si 0.915 3.085 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.266 1.266 22 C -0.149 4.149 23 C -0.037 4.037 24 C 0.385 3.615 25 O -0.425 6.425 26 C -0.220 4.220 27 C -0.147 4.147 28 C -0.149 4.149 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.397 0.603 35 H 0.274 0.726 36 H 0.152 0.848 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.469 13.174 -17.339 21.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.011 4.011 3 H 0.129 0.871 4 O -0.250 6.250 5 C 0.367 3.633 6 O -0.414 6.414 7 C -0.191 4.191 8 C -0.046 4.046 9 C -0.215 4.215 10 C 0.133 3.867 11 N -0.336 5.336 12 C 0.346 3.654 13 O -0.436 6.436 14 C -0.571 4.571 15 H 0.092 0.908 16 C -0.137 4.137 17 N -0.384 5.384 18 Si 0.739 3.261 19 H -0.191 1.191 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.170 4.170 23 C -0.056 4.056 24 C 0.258 3.742 25 O -0.295 6.295 26 C -0.239 4.239 27 C -0.184 4.184 28 C -0.186 4.186 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.231 0.769 35 H 0.085 0.915 36 H 0.170 0.830 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.936 12.139 -17.813 21.642 hybrid contribution 0.363 0.243 1.173 1.251 sum -1.573 12.382 -16.640 20.801 Atomic orbital electron populations 1.22067 0.91653 1.04065 1.04133 1.22986 0.96592 0.98411 0.83125 0.87100 1.86742 1.77340 1.41320 1.19569 1.21376 0.73557 0.84849 0.83497 1.90769 1.50200 1.16064 1.84350 1.18754 1.14120 0.94710 0.91530 1.20811 0.93985 0.99282 0.90547 1.20841 1.07539 0.94230 0.98878 1.18324 0.89991 0.91353 0.87043 1.44267 1.49002 1.19193 1.21109 1.18467 0.80575 0.78042 0.88323 1.90633 1.40950 1.59483 1.52581 1.20822 1.34199 1.00183 1.01902 0.90838 1.25763 0.93230 0.96604 0.98063 1.69963 1.24500 1.09774 1.34116 0.86294 0.79679 0.78362 0.81729 1.19076 1.20321 1.19042 1.21519 1.02876 1.02278 0.90289 1.21325 0.93348 0.92776 0.98151 1.23644 0.73847 0.87602 0.89113 1.90442 1.34294 1.17924 1.86852 1.22709 1.09889 1.01305 0.89962 1.23001 0.97528 1.01456 0.96453 1.23026 0.92658 1.03637 0.99285 0.90901 0.90395 0.90029 0.85197 0.85418 0.76884 0.91474 0.83043 0.85005 0.85334 0.87825 0.87467 0.87513 0.87541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.53 37.16 0.35 -1.17 16 2 C 0.05 0.52 2.91 -27.88 -0.08 0.44 16 3 H 0.11 1.17 7.16 -51.93 -0.37 0.80 16 4 O -0.33 -5.10 8.73 -47.08 -0.41 -5.51 16 5 C 0.52 8.49 7.86 34.49 0.27 8.76 16 6 O -0.52 -8.82 15.60 -19.28 -0.30 -9.12 16 7 C -0.19 -3.24 5.88 -104.94 -0.62 -3.86 16 8 C -0.03 -0.44 9.58 -39.21 -0.38 -0.81 16 9 C -0.19 -3.22 9.95 -39.43 -0.39 -3.61 16 10 C 0.23 4.69 6.29 -83.81 -0.53 4.17 16 11 N -0.69 -14.76 5.29 -11.19 -0.06 -14.82 16 12 C 0.54 14.32 7.57 -13.06 -0.10 14.22 16 13 O -0.55 -16.67 12.42 5.17 0.06 -16.60 16 14 C -0.54 -14.07 9.54 -35.68 -0.34 -14.41 16 15 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 16 C 0.09 2.23 5.50 -17.35 -0.10 2.14 16 17 N -0.76 -21.37 11.83 55.55 0.66 -20.72 16 18 Si 0.92 18.96 29.56 -169.99 -5.02 13.94 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 20 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 C -0.15 -3.09 8.66 -39.43 -0.34 -3.43 16 23 C -0.04 -0.67 9.60 -39.22 -0.38 -1.05 16 24 C 0.39 4.28 6.18 -29.04 -0.18 4.10 16 25 O -0.42 -6.26 16.69 -12.82 -0.21 -6.47 16 26 C -0.22 -1.62 6.12 -91.77 -0.56 -2.18 16 27 C -0.15 -0.91 10.14 -26.70 -0.27 -1.18 16 28 C -0.15 -1.01 10.05 -26.70 -0.27 -1.28 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.13 1.86 7.64 -52.48 -0.40 1.46 16 33 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.40 7.07 8.79 -40.82 -0.36 6.71 16 35 H 0.27 7.05 8.29 -40.82 -0.34 6.71 16 36 H 0.15 3.57 6.20 -52.48 -0.33 3.25 16 37 H 0.13 2.26 7.60 -52.48 -0.40 1.86 16 38 H 0.13 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.11 0.88 7.89 -51.93 -0.41 0.47 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -33.95 373.31 -8.76 -42.70 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -5.19 Total: 10.13 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -3.90 Total: 0.85 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.60 Total: -35.54 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -0.86 Total: -37.71 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.95 -8.76 -42.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798569211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.727 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds