Wall clock time and date at job start Tue Mar 31 2020 17:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47047 * 2 1 4 4 O 1.45200 * 109.46796 * 119.99654 * 2 1 3 5 5 C 1.34752 * 117.00135 * 270.00103 * 4 2 1 6 6 O 1.21513 * 119.99805 * 0.02562 * 5 4 2 7 7 C 1.47467 * 120.00087 * 180.02562 * 5 4 2 8 8 C 1.39840 * 120.06701 * 179.97438 * 7 5 4 9 9 C 1.37607 * 119.93135 * 180.22740 * 8 7 5 10 10 C 1.39274 * 120.06466 * 359.52445 * 9 8 7 11 11 N 1.39069 * 119.92960 * 180.22911 * 10 9 8 12 12 C 1.34775 * 120.00024 * 145.05147 * 11 10 9 13 13 O 1.21719 * 119.99873 * 4.56409 * 12 11 10 14 14 C 1.46200 * 120.00041 * 184.56167 * 12 11 10 15 15 H 1.08002 * 119.99719 * 0.02562 * 14 12 11 16 16 C 1.40120 * 120.00239 * 180.02562 * 14 12 11 17 17 N 1.30642 * 119.99831 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00349 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47185 * 59.99980 * 18 16 14 20 20 H 1.48497 * 109.46954 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.46892 * 300.00123 * 18 16 14 22 22 C 1.39264 * 120.13546 * 0.45814 * 10 9 8 23 23 C 1.37611 * 120.07011 * 359.79051 * 22 10 9 24 24 C 1.50698 * 109.47582 * 239.99599 * 2 1 3 25 25 O 1.20754 * 120.00253 * 260.00112 * 24 2 1 26 26 C 1.50700 * 119.99769 * 80.00140 * 24 2 1 27 27 C 1.52999 * 117.49899 * 223.75119 * 26 24 2 28 28 C 1.52997 * 117.50110 * 155.09193 * 26 24 2 29 29 H 1.09000 * 109.47047 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47528 * 300.00229 * 1 2 3 31 31 H 1.09006 * 109.46621 * 60.00588 * 1 2 3 32 32 H 1.08007 * 120.03268 * 359.96084 * 8 7 5 33 33 H 1.08000 * 119.96598 * 179.74638 * 9 8 7 34 34 H 0.97005 * 120.00121 * 325.04568 * 11 10 9 35 35 H 0.96997 * 119.99981 * 180.02562 * 17 16 14 36 36 H 1.08004 * 119.96436 * 179.77478 * 22 10 9 37 37 H 1.08005 * 120.03492 * 179.97438 * 23 22 10 38 38 H 1.09001 * 115.55335 * 9.41449 * 26 24 2 39 39 H 1.09003 * 117.49976 * 359.97438 * 27 26 24 40 40 H 1.08999 * 117.50274 * 145.01995 * 27 26 24 41 41 H 1.08997 * 117.50210 * 214.98162 * 28 26 24 42 42 H 1.09000 * 117.49650 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6844 1.1856 5 6 2.2178 0.0670 2.2854 6 8 1.9967 1.2615 2.2547 7 6 2.7091 -0.5602 3.5263 8 6 2.9217 0.2184 4.6683 9 6 3.3847 -0.3690 5.8234 10 6 3.6321 -1.7392 5.8587 11 7 4.0955 -2.3307 7.0289 12 6 3.7022 -3.5778 7.3550 13 8 3.0089 -4.2179 6.5862 14 6 4.1086 -4.1619 8.6322 15 1 4.7235 -3.5938 9.3145 16 6 3.7002 -5.4588 8.9711 17 7 2.9568 -6.1461 8.1455 18 14 4.2187 -6.2048 10.6032 19 1 3.7069 -5.3653 11.7161 20 1 3.6601 -7.5757 10.7206 21 1 5.7009 -6.2662 10.6707 22 6 3.4210 -2.5172 4.7231 23 6 2.9630 -1.9348 3.5635 24 6 2.0324 -0.7105 -1.2304 25 8 2.4049 -1.8567 -1.1559 26 6 2.0700 0.0096 -2.5537 27 6 1.5795 -0.7521 -3.7866 28 6 3.0744 -0.4826 -3.5975 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 2.7268 1.2804 4.6425 33 1 3.5530 0.2325 6.7045 34 1 4.7017 -1.8456 7.6104 35 1 2.6738 -7.0437 8.3802 36 1 3.6173 -3.5789 4.7525 37 1 2.7999 -2.5387 2.6831 38 1 1.8715 1.0806 -2.5120 39 1 1.2301 -1.7742 -3.6407 40 1 1.0589 -0.1823 -4.5562 41 1 3.5366 0.2645 -4.2427 42 1 3.7084 -1.3270 -3.3270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798569211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:10 Heat of formation + Delta-G solvation = -127.353203 kcal Electronic energy + Delta-G solvation = -26771.016554 eV Core-core repulsion = 22681.370577 eV Total energy + Delta-G solvation = -4089.645977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.99020 -41.07295 -40.55541 -38.76403 -37.64151 -37.03517 -35.45525 -34.59911 -33.34669 -31.98795 -31.07276 -28.47769 -27.18107 -25.62611 -23.91360 -23.75587 -23.38294 -22.30216 -21.43414 -20.52668 -19.60093 -19.14778 -18.51204 -18.04063 -17.60795 -17.38489 -17.18424 -16.46109 -16.10638 -15.94262 -15.72254 -15.41577 -15.24838 -14.86032 -14.74655 -14.46859 -14.24862 -14.17023 -13.82525 -13.62256 -13.49439 -13.32276 -13.15380 -12.77871 -12.75339 -12.71827 -12.48767 -12.23501 -12.09186 -12.00927 -11.75718 -11.62056 -11.54902 -11.17563 -10.91017 -10.68272 -10.13967 -9.84039 -9.00836 -8.39925 -6.98464 -0.33042 0.41847 0.58694 1.36978 1.38694 1.40269 1.46860 1.55387 2.19062 2.33781 2.67718 2.75836 2.82815 2.85124 3.50741 3.57931 3.70178 3.79314 3.82675 3.87712 3.96004 3.97239 3.98416 4.17063 4.33274 4.42011 4.54390 4.61542 4.64066 4.70369 4.88760 4.96471 4.99449 5.01954 5.10878 5.16471 5.23006 5.28868 5.29557 5.38901 5.64387 5.75222 6.10845 6.22090 6.28892 6.60928 6.74637 7.24152 8.27962 8.52677 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.022006 B = 0.002145 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.073557 B =13051.116207 C =13818.192995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.033 3.967 3 H 0.127 0.873 4 O -0.350 6.350 5 C 0.524 3.476 6 O -0.525 6.525 7 C -0.187 4.187 8 C -0.019 4.019 9 C -0.172 4.172 10 C 0.207 3.793 11 N -0.686 5.686 12 C 0.526 3.474 13 O -0.602 6.602 14 C -0.561 4.561 15 H 0.098 0.902 16 C 0.028 3.972 17 N -0.811 5.811 18 Si 1.002 2.998 19 H -0.253 1.253 20 H -0.276 1.276 21 H -0.253 1.253 22 C -0.170 4.170 23 C -0.037 4.037 24 C 0.387 3.613 25 O -0.474 6.474 26 C -0.222 4.222 27 C -0.137 4.137 28 C -0.153 4.153 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.119 0.881 32 H 0.160 0.840 33 H 0.164 0.836 34 H 0.414 0.586 35 H 0.278 0.722 36 H 0.112 0.888 37 H 0.133 0.867 38 H 0.161 0.839 39 H 0.087 0.913 40 H 0.139 0.861 41 H 0.134 0.866 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.462 16.289 -17.482 23.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.022 4.022 3 H 0.145 0.855 4 O -0.267 6.267 5 C 0.372 3.628 6 O -0.416 6.416 7 C -0.189 4.189 8 C -0.038 4.038 9 C -0.193 4.193 10 C 0.107 3.893 11 N -0.330 5.330 12 C 0.333 3.667 13 O -0.488 6.488 14 C -0.596 4.596 15 H 0.116 0.884 16 C -0.188 4.188 17 N -0.440 5.440 18 Si 0.821 3.179 19 H -0.176 1.176 20 H -0.201 1.201 21 H -0.176 1.176 22 C -0.192 4.192 23 C -0.056 4.056 24 C 0.263 3.737 25 O -0.348 6.348 26 C -0.241 4.241 27 C -0.174 4.174 28 C -0.190 4.190 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.137 0.863 32 H 0.178 0.822 33 H 0.181 0.819 34 H 0.251 0.749 35 H 0.088 0.912 36 H 0.130 0.870 37 H 0.151 0.849 38 H 0.179 0.821 39 H 0.105 0.895 40 H 0.157 0.843 41 H 0.152 0.848 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.913 15.331 -17.981 23.707 hybrid contribution 0.326 -0.608 1.012 1.225 sum -1.587 14.723 -16.969 22.522 Atomic orbital electron populations 1.22093 0.89939 1.03846 1.05633 1.23475 0.98081 0.98866 0.81799 0.85532 1.86724 1.77297 1.42195 1.20472 1.21095 0.73449 0.84672 0.83571 1.90757 1.50351 1.15955 1.84560 1.19005 1.13003 0.94123 0.92791 1.21151 0.92545 1.00501 0.89576 1.21115 1.05378 0.92534 1.00281 1.18528 0.91675 0.92856 0.86218 1.43754 1.49375 1.17928 1.21898 1.18814 0.80177 0.79315 0.88378 1.90604 1.42999 1.61323 1.53850 1.21394 1.34749 1.01127 1.02346 0.88441 1.27034 0.92531 0.96879 1.02393 1.70136 1.26417 1.10474 1.36988 0.84994 0.79722 0.77248 0.75959 1.17638 1.20069 1.17645 1.21259 1.05010 1.00742 0.92142 1.21253 0.93317 0.93697 0.97305 1.24205 0.72054 0.86955 0.90462 1.90438 1.36706 1.19993 1.87640 1.22795 1.10894 1.02540 0.87878 1.23121 0.97219 1.00933 0.96134 1.23124 0.92921 1.03626 0.99339 0.91994 0.91074 0.86279 0.82219 0.81877 0.74941 0.91153 0.87011 0.84946 0.82093 0.89452 0.84334 0.84812 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.53 71.98 0.69 -2.04 16 2 C 0.03 0.73 2.91 29.85 0.09 0.81 16 3 H 0.13 2.38 7.16 -2.39 -0.02 2.36 16 4 O -0.35 -10.72 8.73 -50.45 -0.44 -11.16 16 5 C 0.52 16.61 7.86 70.25 0.55 17.16 16 6 O -0.52 -16.53 15.60 19.80 0.31 -16.22 16 7 C -0.19 -6.30 5.88 -20.07 -0.12 -6.42 16 8 C -0.02 -0.57 9.58 22.51 0.22 -0.35 16 9 C -0.17 -5.40 9.95 22.37 0.22 -5.18 16 10 C 0.21 8.42 6.29 38.49 0.24 8.67 16 11 N -0.69 -29.76 5.29 -307.52 -1.63 -31.39 16 12 C 0.53 29.10 7.57 86.31 0.65 29.76 16 13 O -0.60 -38.52 12.42 -4.41 -0.05 -38.57 16 14 C -0.56 -29.94 9.54 24.80 0.24 -29.71 16 15 H 0.10 4.54 7.85 -2.91 -0.02 4.51 16 16 C 0.03 1.51 5.50 85.33 0.47 1.98 16 17 N -0.81 -47.83 11.83 21.85 0.26 -47.57 16 18 Si 1.00 38.87 29.56 68.60 2.03 40.90 16 19 H -0.25 -9.18 7.11 99.48 0.71 -8.47 16 20 H -0.28 -10.46 7.11 99.48 0.71 -9.75 16 21 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 22 C -0.17 -7.52 8.66 22.37 0.19 -7.33 16 23 C -0.04 -1.40 9.60 22.51 0.22 -1.18 16 24 C 0.39 8.39 6.18 29.10 0.18 8.57 16 25 O -0.47 -14.54 16.69 16.57 0.28 -14.27 16 26 C -0.22 -2.76 6.12 -11.54 -0.07 -2.83 16 27 C -0.14 -1.39 10.14 30.62 0.31 -1.08 16 28 C -0.15 -1.81 10.05 30.62 0.31 -1.50 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.16 3.92 7.64 -2.91 -0.02 3.89 16 33 H 0.16 3.95 8.06 -2.91 -0.02 3.92 16 34 H 0.41 14.57 8.79 -92.70 -0.82 13.76 16 35 H 0.28 14.91 8.29 -92.71 -0.77 14.15 16 36 H 0.11 5.83 6.20 -2.91 -0.02 5.81 16 37 H 0.13 4.89 7.60 -2.91 -0.02 4.87 16 38 H 0.16 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.14 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 1.39 7.89 -2.39 -0.02 1.37 16 Total: -1.00 -79.31 373.31 5.39 -73.92 By element: Atomic # 1 Polarization: 34.77 SS G_CDS: 0.26 Total: 35.02 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 4.39 Total: 9.33 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -1.37 Total: -78.96 kcal Atomic # 8 Polarization: -80.31 SS G_CDS: 0.09 Total: -80.22 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -79.31 5.39 -73.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798569211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.430 kcal (2) G-P(sol) polarization free energy of solvation -79.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds