Wall clock time and date at job start Tue Mar 31 2020 17:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 O 1.42895 * 109.47000 * 120.00235 * 2 1 3 5 5 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 6 6 H 1.09000 * 109.47486 * 299.99829 * 5 2 1 7 7 N 1.46505 * 109.47266 * 60.00137 * 5 2 1 8 8 C 1.34767 * 119.99959 * 274.99643 * 7 5 2 9 9 O 1.21287 * 120.00138 * 359.97438 * 8 7 5 10 10 C 1.50705 * 120.00276 * 179.97438 * 8 7 5 11 11 C 1.52999 * 117.49919 * 248.62619 * 10 8 7 12 12 C 1.52996 * 117.50179 * 180.02562 * 10 8 7 13 13 C 1.50706 * 109.46953 * 179.97438 * 5 2 1 14 14 O 1.20821 * 120.00138 * 240.00583 * 13 5 2 15 15 O 1.34228 * 120.00081 * 59.99802 * 13 5 2 16 16 C 1.45198 * 117.00171 * 179.97438 * 15 13 5 17 17 C 1.53009 * 109.47017 * 180.02562 * 16 15 13 18 18 C 1.52999 * 109.46874 * 180.02562 * 17 16 15 19 19 S 1.81002 * 109.46809 * 180.02562 * 18 17 16 20 20 C 1.76205 * 99.99684 * 179.97438 * 19 18 17 21 21 H 1.07992 * 119.99938 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99829 * 180.02562 * 20 19 18 23 23 N 1.31628 * 119.99963 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 120.00044 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46924 * 89.99854 * 24 22 20 26 26 H 1.48491 * 109.47210 * 210.00251 * 24 22 20 27 27 H 1.48500 * 109.47021 * 330.00245 * 24 22 20 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 0.96709 * 113.99981 * 179.97438 * 4 2 1 32 32 H 0.96998 * 119.99791 * 94.99814 * 7 5 2 33 33 H 1.08997 * 115.54387 * 34.32967 * 10 8 7 34 34 H 1.09004 * 117.50134 * 359.97438 * 11 10 8 35 35 H 1.08998 * 117.49878 * 145.02022 * 11 10 8 36 36 H 1.08994 * 117.49642 * 214.98227 * 12 10 8 37 37 H 1.09000 * 117.49672 * 359.97438 * 12 10 8 38 38 H 1.08992 * 109.47243 * 300.00533 * 16 15 13 39 39 H 1.08996 * 109.46629 * 60.00399 * 16 15 13 40 40 H 1.08995 * 109.46616 * 300.00350 * 17 16 15 41 41 H 1.08999 * 109.47049 * 60.00099 * 17 16 15 42 42 H 1.09002 * 109.46994 * 300.00132 * 18 17 16 43 43 H 1.08996 * 109.46851 * 60.00079 * 18 17 16 44 44 H 0.96997 * 119.99739 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0399 -0.7213 -1.2493 6 1 1.6766 -1.7490 -1.2493 7 7 1.5516 -0.0307 -2.4455 8 6 0.3297 -0.3165 -2.9369 9 8 -0.3655 -1.1458 -2.3891 10 6 -0.1730 0.3943 -4.1670 11 6 -1.3348 1.3743 -3.9915 12 6 -1.5683 0.0261 -4.6752 13 6 3.5470 -0.7208 -1.2496 14 8 4.1507 -0.1975 -2.1560 15 8 4.2186 -1.3016 -0.2430 16 6 5.6686 -1.2636 -0.3095 17 6 6.2539 -1.9706 0.9147 18 6 7.7818 -1.9300 0.8450 19 16 8.4742 -2.7671 2.2928 20 6 10.1945 -2.5767 1.9625 21 1 10.5193 -2.0611 1.0710 22 6 11.1321 -3.0895 2.8482 23 7 12.4172 -2.9469 2.6018 24 14 10.5701 -3.9809 4.3907 25 1 10.4202 -5.4292 4.0987 26 1 11.5780 -3.7943 5.4652 27 1 9.2654 -3.4278 4.8344 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 2.9704 -0.7122 1.2327 32 1 2.1077 0.6323 -2.8837 33 1 0.5851 0.6400 -4.9107 34 1 -1.7359 1.5046 -2.9864 35 1 -1.3412 2.2649 -4.6198 36 1 -1.7284 0.0294 -5.7533 37 1 -2.1226 -0.7306 -4.1200 38 1 6.0041 -1.7686 -1.2152 39 1 6.0044 -0.2268 -0.3258 40 1 5.9183 -1.4660 1.8207 41 1 5.9179 -3.0074 0.9307 42 1 8.1176 -2.4344 -0.0611 43 1 8.1173 -0.8931 0.8293 44 1 13.0724 -3.3050 3.2209 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805483496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:26 Heat of formation + Delta-G solvation = -180.523283 kcal Electronic energy + Delta-G solvation = -25725.888103 eV Core-core repulsion = 21769.380449 eV Total energy + Delta-G solvation = -3956.507654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.30792 -41.03856 -38.68747 -38.18336 -37.05965 -35.62658 -34.97613 -34.68552 -32.06868 -29.79313 -28.12040 -27.49058 -25.22995 -23.44440 -23.27744 -22.74613 -21.88335 -21.45453 -19.66685 -19.25969 -19.06789 -18.50624 -17.82267 -17.55784 -17.18140 -17.09098 -16.37884 -16.15140 -15.97123 -15.75248 -15.26312 -15.00554 -14.86183 -14.57669 -14.41345 -14.08227 -13.80078 -13.61857 -13.40675 -13.19179 -13.06041 -13.01086 -12.73870 -12.59098 -12.45600 -12.41477 -12.25141 -11.84745 -11.69441 -11.60149 -11.55996 -11.48032 -11.44714 -11.16931 -11.01418 -10.59593 -10.30388 -9.00277 -8.52430 -6.24231 0.75852 0.89031 1.16955 1.32893 1.37176 1.48159 1.72407 2.02249 2.24269 2.65871 2.85874 2.90563 3.05215 3.31152 3.41191 3.63030 3.81197 3.82926 3.85725 3.89798 3.99254 4.07953 4.18733 4.21544 4.27705 4.30672 4.44759 4.64545 4.75242 4.80873 4.85294 4.92314 4.95192 4.98993 5.01715 5.10151 5.23231 5.25285 5.26141 5.68956 6.10018 6.26948 6.33390 6.63087 6.91490 7.03026 8.60426 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.032785 B = 0.001893 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.833519 B =14791.224806 C =15335.542259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.103 3.897 3 H 0.077 0.923 4 O -0.566 6.566 5 C 0.128 3.872 6 H 0.125 0.875 7 N -0.703 5.703 8 C 0.546 3.454 9 O -0.560 6.560 10 C -0.203 4.203 11 C -0.139 4.139 12 C -0.151 4.151 13 C 0.462 3.538 14 O -0.512 6.512 15 O -0.348 6.348 16 C 0.079 3.921 17 C -0.091 4.091 18 C -0.074 4.074 19 S -0.208 6.208 20 C -0.526 4.526 21 H 0.052 0.948 22 C 0.038 3.962 23 N -0.922 5.922 24 Si 0.925 3.075 25 H -0.262 1.262 26 H -0.264 1.264 27 H -0.226 1.226 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.390 0.610 32 H 0.421 0.579 33 H 0.147 0.853 34 H 0.094 0.906 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.518 10.435 -12.677 33.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.042 3.958 3 H 0.095 0.905 4 O -0.376 6.376 5 C 0.021 3.979 6 H 0.143 0.857 7 N -0.359 5.359 8 C 0.335 3.665 9 O -0.438 6.438 10 C -0.224 4.224 11 C -0.176 4.176 12 C -0.189 4.189 13 C 0.304 3.696 14 O -0.400 6.400 15 O -0.264 6.264 16 C 0.004 3.996 17 C -0.129 4.129 18 C -0.223 4.223 19 S 0.020 5.980 20 C -0.673 4.673 21 H 0.070 0.930 22 C -0.167 4.167 23 N -0.559 5.559 24 Si 0.746 3.254 25 H -0.187 1.187 26 H -0.189 1.189 27 H -0.149 1.149 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.242 0.758 32 H 0.259 0.741 33 H 0.165 0.835 34 H 0.113 0.887 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -30.701 9.386 -11.476 34.093 hybrid contribution 2.594 0.390 -1.021 2.815 sum -28.107 9.775 -12.497 32.276 Atomic orbital electron populations 1.21761 0.91352 1.03138 1.02524 1.22140 0.96743 0.94859 0.82025 0.90494 1.86572 1.28944 1.79986 1.42056 1.21281 0.85711 1.01845 0.89103 0.85726 1.45603 1.18466 1.43594 1.28280 1.20194 0.80124 0.81612 0.84594 1.90744 1.56975 1.34827 1.61257 1.22238 0.95071 1.07166 0.97881 1.23074 0.96924 0.94395 1.03192 1.23031 0.94550 0.99029 1.02242 1.23741 0.91360 0.74730 0.79726 1.90687 1.70445 1.42678 1.36218 1.86332 1.23284 1.70940 1.45854 1.23171 0.74211 1.02518 0.99682 1.21190 0.90994 1.02805 0.97940 1.22972 0.97593 1.02666 0.99044 1.83866 1.04283 1.76584 1.33227 1.22363 0.90456 1.42824 1.11674 0.92970 1.25780 0.94148 0.95562 1.01222 1.70037 1.01483 1.45635 1.38785 0.85724 0.80877 0.79907 0.78918 1.18690 1.18873 1.14946 0.91137 0.90851 0.92393 0.75779 0.74079 0.83508 0.88716 0.85251 0.85870 0.89158 0.90600 0.89745 0.88951 0.89687 0.91180 0.90744 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 8.09 71.98 0.58 -1.67 16 2 C 0.10 1.73 3.40 30.60 0.10 1.83 16 3 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 4 O -0.57 -11.40 13.22 -132.59 -1.75 -13.15 16 5 C 0.13 2.22 2.58 44.25 0.11 2.33 16 6 H 0.13 2.49 7.58 -2.39 -0.02 2.47 16 7 N -0.70 -10.00 4.84 -446.08 -2.16 -12.16 16 8 C 0.55 8.57 5.97 87.66 0.52 9.10 16 9 O -0.56 -12.53 13.38 -3.05 -0.04 -12.57 16 10 C -0.20 -1.92 6.19 -11.54 -0.07 -1.99 16 11 C -0.14 -0.91 10.23 30.58 0.31 -0.60 16 12 C -0.15 -1.36 10.04 30.58 0.31 -1.05 16 13 C 0.46 9.08 7.26 71.24 0.52 9.60 16 14 O -0.51 -11.82 15.58 21.98 0.34 -11.48 16 15 O -0.35 -6.91 7.67 -45.68 -0.35 -7.26 16 16 C 0.08 1.70 5.47 71.99 0.39 2.09 16 17 C -0.09 -2.29 5.60 30.60 0.17 -2.12 16 18 C -0.07 -2.57 5.67 71.98 0.41 -2.17 16 19 S -0.21 -9.52 19.41 -56.49 -1.10 -10.61 16 20 C -0.53 -30.28 10.04 67.95 0.68 -29.60 16 21 H 0.05 3.27 8.03 -2.91 -0.02 3.25 16 22 C 0.04 2.18 5.50 84.86 0.47 2.65 16 23 N -0.92 -56.10 13.97 21.65 0.30 -55.80 16 24 Si 0.92 43.27 27.74 68.60 1.90 45.18 16 25 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 26 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.23 -10.10 6.74 99.48 0.67 -9.43 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.16 5.77 -2.39 -0.01 1.15 16 30 H 0.06 1.23 7.53 -2.39 -0.02 1.21 16 31 H 0.39 6.73 6.32 -74.05 -0.47 6.27 16 32 H 0.42 4.81 7.79 -92.71 -0.72 4.09 16 33 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.09 1.19 7.67 -2.39 -0.02 1.17 16 38 H 0.08 1.67 8.13 -2.39 -0.02 1.65 16 39 H 0.08 1.71 8.13 -2.39 -0.02 1.69 16 40 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.07 2.57 8.14 -2.40 -0.02 2.55 16 44 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -71.14 379.49 1.46 -69.68 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -0.20 Total: 19.77 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 4.51 Total: -11.61 kcal Atomic # 7 Polarization: -66.10 SS G_CDS: -1.86 Total: -67.96 kcal Atomic # 8 Polarization: -42.65 SS G_CDS: -1.80 Total: -44.45 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.90 Total: 45.18 kcal Atomic # 16 Polarization: -9.52 SS G_CDS: -1.10 Total: -10.61 kcal Total: -71.14 1.46 -69.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805483496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.846 kcal (2) G-P(sol) polarization free energy of solvation -71.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds