Wall clock time and date at job start Tue Mar 31 2020 16:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 C 1.38677 * 119.89581 * 59.73101 * 4 2 1 6 6 C 1.37849 * 120.64827 * 179.70282 * 5 4 2 7 7 C 1.38974 * 119.97411 * 0.58690 * 6 5 4 8 8 O 1.34908 * 133.10011 * 179.71691 * 7 6 5 9 9 C 1.33779 * 111.36342 * 179.97438 * 8 7 6 10 10 C 1.36145 * 109.83708 * 359.97438 * 9 8 7 11 11 C 1.46917 * 127.14486 * 179.97438 * 10 9 8 12 12 O 1.21579 * 119.99636 * 180.02562 * 11 10 9 13 13 O 1.34818 * 120.00454 * 0.02707 * 11 10 9 14 14 C 1.45202 * 117.00072 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47092 * 179.97438 * 14 13 11 16 16 O 1.21297 * 119.99774 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00132 * 179.97438 * 15 14 13 18 18 C 1.37091 * 120.00131 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00056 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00056 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00406 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99923 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47261 * 89.99993 * 22 20 18 24 24 H 1.48503 * 109.47113 * 210.00129 * 22 20 18 25 25 H 1.48500 * 109.47253 * 329.99682 * 22 20 18 26 26 C 1.40217 * 119.24811 * 359.68736 * 7 6 5 27 27 C 1.37849 * 119.90046 * 239.99913 * 4 2 1 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.08000 * 119.68056 * 359.97254 * 5 4 2 36 36 H 1.08004 * 120.01382 * 180.30173 * 6 5 4 37 37 H 1.07996 * 125.07668 * 180.02562 * 9 8 7 38 38 H 1.08993 * 109.47251 * 299.99662 * 14 13 11 39 39 H 1.08999 * 109.46810 * 59.99615 * 14 13 11 40 40 H 0.97005 * 120.00159 * 0.02562 * 17 15 14 41 41 H 0.96993 * 120.00142 * 179.97438 * 21 20 18 42 42 H 1.07994 * 120.18837 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 1.6914 -0.2381 -2.4890 6 6 2.1473 -0.8723 -3.6249 7 6 2.9468 -2.0037 -3.5149 8 8 3.5223 -2.8176 -4.4240 9 6 4.2149 -3.7971 -3.8318 10 6 4.1272 -3.6721 -2.4789 11 6 4.7414 -4.5413 -1.4661 12 8 4.5766 -4.3080 -0.2843 13 8 5.4877 -5.5974 -1.8471 14 6 6.0632 -6.4127 -0.7923 15 6 6.8576 -7.5379 -1.4040 16 8 6.9319 -7.6420 -2.6102 17 7 7.4863 -8.4277 -0.6108 18 6 8.2094 -9.4509 -1.1671 19 1 8.2756 -9.5437 -2.2411 20 6 8.8572 -10.3687 -0.3493 21 7 8.7772 -10.2556 0.9575 22 14 9.8431 -11.7625 -1.1075 23 1 11.2476 -11.3238 -1.3072 24 1 9.8159 -12.9383 -0.2008 25 1 9.2494 -12.1335 -2.4171 26 6 3.2852 -2.4823 -2.2412 27 6 2.8247 -1.8311 -1.1016 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.0662 0.6378 -2.5801 36 1 1.8794 -0.4928 -4.5999 37 1 4.7624 -4.5706 -4.3496 38 1 6.7186 -5.7985 -0.1750 39 1 5.2648 -6.8254 -0.1757 40 1 7.4272 -8.3442 0.3539 41 1 9.2290 -10.8965 1.5283 42 1 3.0869 -2.2010 -0.1215 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805595330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:44 Heat of formation + Delta-G solvation = -103.970950 kcal Electronic energy + Delta-G solvation = -26696.499951 eV Core-core repulsion = 22607.867904 eV Total energy + Delta-G solvation = -4088.632047 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.84365 -40.03275 -39.04102 -38.11394 -36.05240 -35.14987 -34.02093 -33.17687 -31.40192 -30.33555 -29.46007 -28.31177 -27.46448 -24.97644 -24.06000 -23.38368 -23.26868 -20.69515 -20.12395 -19.59102 -18.25679 -18.08773 -17.25197 -16.66624 -16.54968 -16.39967 -16.06833 -15.90852 -15.23038 -14.69654 -14.54265 -14.19602 -13.99414 -13.98822 -13.81388 -13.79471 -13.38813 -13.16447 -12.86909 -12.67127 -12.35912 -12.17251 -12.02272 -11.63691 -11.53856 -11.42669 -11.24163 -11.14763 -10.95958 -10.52819 -10.45659 -10.43301 -10.41261 -10.30810 -9.62290 -8.76431 -8.55017 -8.51875 -8.10203 -6.51494 -3.93668 0.51181 0.99505 1.45720 2.34576 2.66780 2.94195 3.12227 3.22618 3.28609 3.44520 3.71886 4.08530 4.09721 4.32149 4.41422 4.53750 4.65402 4.81804 4.86833 4.90887 4.98254 5.13269 5.13685 5.19943 5.28525 5.28970 5.47181 5.49173 5.50395 5.59979 5.67460 5.68443 5.82726 5.90815 5.91535 5.94094 6.02717 6.08295 6.28236 6.35299 6.57310 6.78516 7.46296 7.83404 7.94696 8.46427 9.05259 9.37427 9.86944 10.65665 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.025005 B = 0.002074 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.517396 B =13496.356616 C =14424.816006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.087 4.087 5 C -0.090 4.090 6 C -0.099 4.099 7 C 0.040 3.960 8 O -0.181 6.181 9 C 0.109 3.891 10 C -0.224 4.224 11 C 0.535 3.465 12 O -0.509 6.509 13 O -0.325 6.325 14 C 0.064 3.936 15 C 0.439 3.561 16 O -0.578 6.578 17 N -0.552 5.552 18 C -0.303 4.303 19 H 0.106 0.894 20 C 0.025 3.975 21 N -0.896 5.896 22 Si 0.934 3.066 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.268 1.268 26 C -0.084 4.084 27 C -0.062 4.062 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.233 0.767 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.395 0.605 41 H 0.274 0.726 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.290 21.612 -3.503 26.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.074 4.074 3 C -0.202 4.202 4 C -0.087 4.087 5 C -0.108 4.108 6 C -0.118 4.118 7 C -0.006 4.006 8 O -0.080 6.080 9 C 0.041 3.959 10 C -0.227 4.227 11 C 0.380 3.620 12 O -0.399 6.399 13 O -0.240 6.240 14 C -0.014 4.014 15 C 0.223 3.777 16 O -0.462 6.462 17 N -0.189 5.189 18 C -0.432 4.432 19 H 0.124 0.876 20 C -0.178 4.178 21 N -0.537 5.537 22 Si 0.761 3.239 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.193 1.193 26 C -0.085 4.085 27 C -0.080 4.080 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.249 0.751 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.229 0.771 41 H 0.084 0.916 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.224 21.510 -4.081 26.667 hybrid contribution 0.648 -0.898 0.630 1.274 sum -14.576 20.612 -3.451 25.480 Atomic orbital electron populations 1.21865 0.94168 1.02212 1.01924 1.20114 0.96016 0.96049 0.95218 1.21861 1.01451 0.94927 1.01921 1.19781 0.98274 0.95695 0.94998 1.20739 0.99634 0.99735 0.90700 1.19898 0.98681 0.93120 1.00058 1.19546 1.00021 0.94997 0.86081 1.83896 1.54222 1.33919 1.35985 1.24986 0.90164 0.88920 0.91816 1.19950 1.09541 1.00368 0.92798 1.19828 0.76068 0.79076 0.87073 1.90827 1.59012 1.71532 1.18508 1.86576 1.60497 1.37427 1.39471 1.22764 0.97988 0.92241 0.88395 1.19293 0.85523 0.85017 0.87838 1.90551 1.65654 1.75931 1.14051 1.41700 1.44002 1.24291 1.08886 1.19722 1.25810 1.03288 0.94349 0.87586 1.25323 0.98032 0.99216 0.95217 1.69611 1.43560 1.37642 1.02877 0.85790 0.79608 0.79648 0.78855 1.20252 1.20806 1.19275 1.19292 0.99851 0.95203 0.94149 1.20576 0.95702 0.93777 0.97960 0.92447 0.92251 0.92381 0.90065 0.92260 0.92382 0.92445 0.84706 0.84734 0.75107 0.89384 0.89393 0.77117 0.91598 0.84483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.00 37.16 0.33 -0.57 16 2 C -0.06 -0.41 3.09 -91.77 -0.28 -0.70 16 3 C -0.14 -0.90 9.01 37.15 0.33 -0.57 16 4 C -0.09 -0.82 4.78 -104.60 -0.50 -1.32 16 5 C -0.09 -0.73 8.68 -39.56 -0.34 -1.08 16 6 C -0.10 -0.90 10.06 -39.45 -0.40 -1.30 16 7 C 0.04 0.47 7.39 -38.57 -0.28 0.18 16 8 O -0.18 -2.10 10.53 5.41 0.06 -2.05 16 9 C 0.11 1.29 11.82 29.98 0.35 1.64 16 10 C -0.22 -3.23 6.30 -103.28 -0.65 -3.88 16 11 C 0.53 9.09 7.94 34.24 0.27 9.36 16 12 O -0.51 -9.38 16.08 -19.33 -0.31 -9.69 16 13 O -0.32 -6.05 9.60 -47.50 -0.46 -6.50 16 14 C 0.06 1.21 5.96 36.01 0.21 1.43 16 15 C 0.44 10.46 7.86 -10.99 -0.09 10.38 16 16 O -0.58 -15.74 16.08 -14.12 -0.23 -15.97 16 17 N -0.55 -13.86 5.29 -10.97 -0.06 -13.92 16 18 C -0.30 -8.29 9.68 -14.94 -0.14 -8.43 16 19 H 0.11 3.02 7.16 -52.49 -0.38 2.65 16 20 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 21 N -0.90 -23.96 13.05 55.50 0.72 -23.23 16 22 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 C -0.08 -1.13 6.29 -104.98 -0.66 -1.79 16 27 C -0.06 -0.76 9.50 -39.41 -0.37 -1.13 16 28 H 0.06 0.31 7.36 -51.93 -0.38 -0.07 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.63 7.87 -51.93 -0.41 0.22 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.31 7.39 -51.93 -0.38 -0.07 16 35 H 0.14 0.74 7.07 -52.49 -0.37 0.37 16 36 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.23 2.14 8.06 -52.49 -0.42 1.71 16 38 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.40 9.42 7.90 -40.82 -0.32 9.10 16 41 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 42 H 0.14 1.75 7.42 -52.49 -0.39 1.36 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -32.81 369.78 -7.18 -39.99 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -5.15 Total: 7.44 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -2.31 Total: 2.78 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.67 Total: -37.15 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -0.94 Total: -34.21 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.81 -7.18 -39.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805595330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.981 kcal (2) G-P(sol) polarization free energy of solvation -32.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds