Wall clock time and date at job start Tue Mar 31 2020 16:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 C 1.38677 * 119.89581 * 59.73101 * 4 2 1 6 6 C 1.37849 * 120.64827 * 179.70282 * 5 4 2 7 7 C 1.38974 * 119.97411 * 0.58690 * 6 5 4 8 8 O 1.34908 * 133.10011 * 179.71691 * 7 6 5 9 9 C 1.33779 * 111.36342 * 179.97438 * 8 7 6 10 10 C 1.36145 * 109.83708 * 359.97438 * 9 8 7 11 11 C 1.46917 * 127.14486 * 179.97438 * 10 9 8 12 12 O 1.21579 * 119.99636 * 180.02562 * 11 10 9 13 13 O 1.34818 * 120.00454 * 0.02707 * 11 10 9 14 14 C 1.45202 * 117.00072 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47092 * 179.97438 * 14 13 11 16 16 O 1.21297 * 119.99774 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00132 * 179.97438 * 15 14 13 18 18 C 1.37091 * 120.00131 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00056 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00056 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00406 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99923 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47261 * 89.99993 * 22 20 18 24 24 H 1.48503 * 109.47113 * 210.00129 * 22 20 18 25 25 H 1.48500 * 109.47253 * 329.99682 * 22 20 18 26 26 C 1.40217 * 119.24811 * 359.68736 * 7 6 5 27 27 C 1.37849 * 119.90046 * 239.99913 * 4 2 1 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.08000 * 119.68056 * 359.97254 * 5 4 2 36 36 H 1.08004 * 120.01382 * 180.30173 * 6 5 4 37 37 H 1.07996 * 125.07668 * 180.02562 * 9 8 7 38 38 H 1.08993 * 109.47251 * 299.99662 * 14 13 11 39 39 H 1.08999 * 109.46810 * 59.99615 * 14 13 11 40 40 H 0.97005 * 120.00159 * 0.02562 * 17 15 14 41 41 H 0.96993 * 120.00142 * 179.97438 * 21 20 18 42 42 H 1.07994 * 120.18837 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 1.6914 -0.2381 -2.4890 6 6 2.1473 -0.8723 -3.6249 7 6 2.9468 -2.0037 -3.5149 8 8 3.5223 -2.8176 -4.4240 9 6 4.2149 -3.7971 -3.8318 10 6 4.1272 -3.6721 -2.4789 11 6 4.7414 -4.5413 -1.4661 12 8 4.5766 -4.3080 -0.2843 13 8 5.4877 -5.5974 -1.8471 14 6 6.0632 -6.4127 -0.7923 15 6 6.8576 -7.5379 -1.4040 16 8 6.9319 -7.6420 -2.6102 17 7 7.4863 -8.4277 -0.6108 18 6 8.2094 -9.4509 -1.1671 19 1 8.2756 -9.5437 -2.2411 20 6 8.8572 -10.3687 -0.3493 21 7 8.7772 -10.2556 0.9575 22 14 9.8431 -11.7625 -1.1075 23 1 11.2476 -11.3238 -1.3072 24 1 9.8159 -12.9383 -0.2008 25 1 9.2494 -12.1335 -2.4171 26 6 3.2852 -2.4823 -2.2412 27 6 2.8247 -1.8311 -1.1016 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.0662 0.6378 -2.5801 36 1 1.8794 -0.4928 -4.5999 37 1 4.7624 -4.5706 -4.3496 38 1 6.7186 -5.7985 -0.1750 39 1 5.2648 -6.8254 -0.1757 40 1 7.4272 -8.3442 0.3539 41 1 9.2290 -10.8965 1.5283 42 1 3.0869 -2.2010 -0.1215 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805595330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:43 Heat of formation + Delta-G solvation = -122.401190 kcal Electronic energy + Delta-G solvation = -26697.299146 eV Core-core repulsion = 22607.867904 eV Total energy + Delta-G solvation = -4089.431242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.75466 -41.47196 -40.00892 -39.78252 -37.51684 -36.04839 -35.82265 -34.13412 -33.42946 -31.23443 -30.34644 -29.82323 -27.94055 -26.78202 -25.27095 -24.33738 -24.01328 -21.69988 -21.44822 -21.03395 -20.09179 -19.35885 -18.29789 -17.87912 -17.74854 -17.71304 -17.26048 -16.99318 -16.74962 -16.20869 -15.75720 -15.70407 -15.38046 -15.04413 -14.68100 -14.48316 -14.38781 -14.17778 -14.02535 -13.83656 -13.59442 -13.55924 -13.18772 -12.94895 -12.79379 -12.48670 -12.31935 -12.12655 -11.98976 -11.94005 -11.89980 -11.84102 -11.58989 -11.53553 -11.36313 -10.54140 -10.13557 -9.56365 -9.39834 -8.53524 -6.04338 -0.41336 0.16358 0.48023 1.17516 1.35164 1.43103 1.54404 1.58797 1.77365 1.85587 2.28640 2.60995 2.99195 3.11948 3.22942 3.41842 3.67123 3.76571 3.86845 4.01407 4.11690 4.14476 4.18830 4.22221 4.27000 4.33277 4.43440 4.64335 4.71074 4.86249 4.90464 5.03203 5.03248 5.10144 5.11455 5.20034 5.30138 5.34923 5.36028 5.43259 5.49620 5.63144 5.87187 5.94994 6.42459 6.55171 7.01043 7.37693 7.90397 8.63489 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.025005 B = 0.002074 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.517396 B =13496.356616 C =14424.816006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.058 4.058 3 C -0.141 4.141 4 C -0.077 4.077 5 C -0.084 4.084 6 C -0.090 4.090 7 C 0.022 3.978 8 O -0.176 6.176 9 C 0.136 3.864 10 C -0.263 4.263 11 C 0.537 3.463 12 O -0.531 6.531 13 O -0.336 6.336 14 C 0.073 3.927 15 C 0.438 3.562 16 O -0.615 6.615 17 N -0.557 5.557 18 C -0.337 4.337 19 H 0.086 0.914 20 C -0.010 4.010 21 N -0.916 5.916 22 Si 0.999 3.001 23 H -0.269 1.269 24 H -0.270 1.270 25 H -0.270 1.270 26 C -0.107 4.107 27 C -0.093 4.093 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.173 0.827 36 H 0.167 0.833 37 H 0.255 0.745 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.400 0.600 41 H 0.281 0.719 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.450 23.272 -4.373 28.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.076 4.076 3 C -0.199 4.199 4 C -0.077 4.077 5 C -0.101 4.101 6 C -0.108 4.108 7 C -0.024 4.024 8 O -0.074 6.074 9 C 0.067 3.933 10 C -0.265 4.265 11 C 0.385 3.615 12 O -0.423 6.423 13 O -0.251 6.251 14 C -0.004 4.004 15 C 0.225 3.775 16 O -0.502 6.502 17 N -0.195 5.195 18 C -0.466 4.466 19 H 0.104 0.896 20 C -0.211 4.211 21 N -0.555 5.555 22 Si 0.822 3.178 23 H -0.194 1.194 24 H -0.195 1.195 25 H -0.194 1.194 26 C -0.108 4.108 27 C -0.111 4.111 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.190 0.810 36 H 0.185 0.815 37 H 0.270 0.730 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.234 0.766 41 H 0.090 0.910 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.399 23.194 -4.926 28.829 hybrid contribution 0.931 -1.303 0.907 1.841 sum -15.468 21.890 -4.019 27.103 Atomic orbital electron populations 1.21853 0.92818 1.01881 1.03315 1.20178 0.97037 0.96569 0.93823 1.21848 1.00703 0.93998 1.03309 1.20081 0.96584 0.94368 0.96686 1.21170 0.99086 1.00308 0.89546 1.20386 0.96897 0.91593 1.01901 1.19921 1.01150 0.96062 0.85236 1.83906 1.53933 1.33741 1.35830 1.25347 0.88499 0.88480 0.90993 1.19965 1.11752 1.01451 0.93355 1.20205 0.75335 0.78496 0.87511 1.90803 1.59950 1.72006 1.19519 1.86565 1.61064 1.38070 1.39448 1.22548 0.98363 0.91231 0.88229 1.19989 0.84805 0.85366 0.87340 1.90515 1.66873 1.77014 1.15777 1.41737 1.44163 1.24367 1.09184 1.19734 1.27925 1.05121 0.93853 0.89572 1.26159 0.98313 1.00994 0.95629 1.69673 1.43722 1.38415 1.03733 0.84834 0.78141 0.76770 0.78035 1.19441 1.19488 1.19439 1.19490 1.00513 0.95367 0.95435 1.20580 0.97949 0.95603 0.96953 0.90860 0.91094 0.93573 0.91340 0.91100 0.93579 0.90864 0.81000 0.81523 0.72972 0.87566 0.87576 0.76574 0.90953 0.86511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.00 71.98 0.65 -0.81 16 2 C -0.06 -0.78 3.09 -11.54 -0.04 -0.82 16 3 C -0.14 -1.46 9.01 71.98 0.65 -0.81 16 4 C -0.08 -1.37 4.78 -19.85 -0.09 -1.47 16 5 C -0.08 -1.11 8.68 22.28 0.19 -0.91 16 6 C -0.09 -1.37 10.06 22.35 0.22 -1.14 16 7 C 0.02 0.49 7.39 22.93 0.17 0.66 16 8 O -0.18 -3.88 10.53 -3.57 -0.04 -3.91 16 9 C 0.14 3.14 11.82 67.33 0.80 3.94 16 10 C -0.26 -7.78 6.30 -18.99 -0.12 -7.90 16 11 C 0.54 18.92 7.94 70.09 0.56 19.47 16 12 O -0.53 -20.43 16.08 19.58 0.31 -20.12 16 13 O -0.34 -12.77 9.60 -50.92 -0.49 -13.26 16 14 C 0.07 2.84 5.96 71.24 0.42 3.26 16 15 C 0.44 21.41 7.86 87.66 0.69 22.10 16 16 O -0.62 -34.46 16.08 15.72 0.25 -34.21 16 17 N -0.56 -28.64 5.29 -306.99 -1.62 -30.26 16 18 C -0.34 -18.88 9.68 84.04 0.81 -18.07 16 19 H 0.09 5.09 7.16 -2.91 -0.02 5.06 16 20 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 21 N -0.92 -48.73 13.05 21.66 0.28 -48.45 16 22 Si 1.00 41.96 29.55 68.60 2.03 43.98 16 23 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 24 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 C -0.11 -2.93 6.29 -20.09 -0.13 -3.06 16 27 C -0.09 -2.34 9.50 22.38 0.21 -2.13 16 28 H 0.07 0.53 7.36 -2.39 -0.02 0.51 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.07 1.09 7.87 -2.39 -0.02 1.08 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.07 0.53 7.39 -2.39 -0.02 0.51 16 35 H 0.17 1.01 7.07 -2.91 -0.02 0.99 16 36 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 37 H 0.25 4.48 8.06 -2.91 -0.02 4.46 16 38 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 39 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 40 H 0.40 19.44 7.90 -92.70 -0.73 18.71 16 41 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 42 H 0.12 3.30 7.42 -2.91 -0.02 3.28 16 Total: -1.00 -72.56 369.78 6.53 -66.02 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.34 Total: 27.96 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 5.47 Total: 12.24 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -1.34 Total: -78.71 kcal Atomic # 8 Polarization: -71.54 SS G_CDS: 0.04 Total: -71.50 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Total: -72.56 6.53 -66.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805595330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.378 kcal (2) G-P(sol) polarization free energy of solvation -72.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds