Wall clock time and date at job start Tue Mar 31 2020 17:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46961 * 2 1 4 4 C 1.52999 * 109.47451 * 240.00367 * 2 1 3 5 5 O 1.45206 * 109.46777 * 304.99819 * 4 2 1 6 6 C 1.34224 * 117.00077 * 179.97438 * 5 4 2 7 7 O 1.20833 * 120.00103 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00302 * 180.02562 * 6 5 4 9 9 C 1.52999 * 109.47581 * 180.02562 * 8 6 5 10 10 C 1.50696 * 109.47581 * 180.02562 * 9 8 6 11 11 H 1.07998 * 119.99778 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00242 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00020 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 120.00050 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47407 * 89.99921 * 14 12 10 16 16 H 1.48499 * 109.47054 * 209.99937 * 14 12 10 17 17 H 1.48507 * 109.47204 * 329.99684 * 14 12 10 18 18 N 1.46500 * 109.47359 * 119.99953 * 2 1 3 19 19 C 1.34523 * 124.45717 * 59.70092 * 18 2 1 20 20 O 1.21441 * 125.71479 * 0.03099 * 19 18 2 21 21 C 1.47820 * 108.57924 * 179.90705 * 19 18 2 22 22 C 1.38566 * 134.30064 * 180.10232 * 21 19 18 23 23 C 1.38613 * 119.72060 * 180.27125 * 22 21 19 24 24 C 1.38232 * 120.45813 * 359.97438 * 23 22 21 25 25 C 1.38615 * 120.46040 * 0.02562 * 24 23 22 26 26 C 1.38559 * 119.71745 * 359.97438 * 25 24 23 27 27 C 1.34532 * 124.46077 * 240.00041 * 18 2 1 28 28 O 1.21445 * 125.71024 * 359.96717 * 27 18 2 29 29 H 1.09000 * 109.46961 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46954 * 299.99756 * 1 2 3 31 31 H 1.08996 * 109.47443 * 59.99741 * 1 2 3 32 32 H 1.09000 * 109.47486 * 184.99871 * 4 2 1 33 33 H 1.09001 * 109.47362 * 64.99148 * 4 2 1 34 34 H 1.09009 * 109.46972 * 299.99362 * 8 6 5 35 35 H 1.08995 * 109.47473 * 59.99636 * 8 6 5 36 36 H 1.09005 * 109.46903 * 300.00018 * 9 8 6 37 37 H 1.09000 * 109.47608 * 59.99121 * 9 8 6 38 38 H 0.97002 * 119.99990 * 179.97438 * 13 12 10 39 39 H 1.08001 * 120.13965 * 0.24501 * 22 21 19 40 40 H 1.08000 * 119.76844 * 180.02562 * 23 22 21 41 41 H 1.07995 * 119.76976 * 180.02562 * 24 23 22 42 42 H 1.07998 * 120.13856 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 8 1.4611 -2.0514 -1.3104 6 6 1.8092 -2.8200 -2.3543 7 8 2.5720 -2.3953 -3.1896 8 6 1.2477 -4.2124 -2.4852 9 6 1.8004 -4.8682 -3.7522 10 6 1.2384 -6.2603 -3.8834 11 1 0.5557 -6.6395 -3.1375 12 6 1.5959 -7.0498 -4.9557 13 7 1.1058 -8.2649 -5.0699 14 14 2.7762 -6.3937 -6.2463 15 1 4.1703 -6.7247 -5.8561 16 1 2.4690 -7.0150 -7.5596 17 1 2.6277 -4.9196 -6.3492 18 7 2.0184 -0.6906 1.1962 19 6 1.7445 -1.9720 1.5003 20 8 1.0642 -2.7283 0.8369 21 6 2.4127 -2.3065 2.7757 22 6 2.4880 -3.4472 3.5588 23 6 3.2172 -3.4248 4.7374 24 6 3.8696 -2.2732 5.1360 25 6 3.8032 -1.1246 4.3628 26 6 3.0780 -1.1323 3.1822 27 6 2.7950 -0.1251 2.1379 28 8 3.1967 1.0210 2.1310 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 3.1264 -0.7994 -1.2056 33 1 1.7516 -0.1583 -2.1370 34 1 1.5354 -4.8034 -1.6156 35 1 0.1607 -4.1615 -2.5465 36 1 1.5132 -4.2774 -4.6220 37 1 2.8875 -4.9191 -3.6905 38 1 1.3570 -8.8202 -5.8245 39 1 1.9802 -4.3498 3.2524 40 1 3.2767 -4.3136 5.3481 41 1 4.4349 -2.2682 6.0561 42 1 4.3153 -0.2278 4.6789 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813087994.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:20 Heat of formation + Delta-G solvation = -125.280184 kcal Electronic energy + Delta-G solvation = -28106.476918 eV Core-core repulsion = 24016.920833 eV Total energy + Delta-G solvation = -4089.556085 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.44481 -41.49834 -39.71939 -39.55091 -37.97379 -36.93715 -35.65367 -34.82326 -33.44138 -32.08229 -31.27312 -28.94794 -27.62137 -26.15790 -25.47412 -23.89218 -23.19193 -22.32799 -21.47447 -20.60449 -19.42250 -18.84636 -18.50240 -18.15463 -17.90766 -17.62244 -17.19898 -16.58948 -16.35770 -16.26509 -15.78388 -15.39415 -15.35618 -15.06137 -15.00486 -14.93436 -14.80177 -14.45235 -13.88461 -13.83954 -13.52466 -13.41158 -13.20336 -12.97543 -12.89805 -12.61267 -12.45176 -12.24746 -12.05443 -11.84758 -11.75098 -11.53688 -11.51002 -11.43958 -11.17242 -10.92393 -10.80740 -10.19066 -10.16596 -8.33482 -6.37890 -0.95975 0.01810 1.03000 1.16896 1.20681 1.32571 1.34299 1.48575 1.65538 1.87708 2.32956 2.60952 2.65558 3.01374 3.25139 3.40074 3.63075 3.63515 3.77694 3.97218 4.08382 4.10037 4.20898 4.23873 4.26869 4.33548 4.36207 4.37749 4.51866 4.69557 4.79282 4.84177 4.88054 4.96467 5.16532 5.22435 5.23847 5.30148 5.32616 5.33553 5.56385 5.59541 5.72659 6.14159 6.20085 6.60650 6.66622 6.79056 7.26972 8.82260 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015075 B = 0.003026 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.941770 B = 9250.116346 C =10323.420382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.145 0.855 4 C 0.041 3.959 5 O -0.327 6.327 6 C 0.467 3.533 7 O -0.544 6.544 8 C -0.087 4.087 9 C 0.005 3.995 10 C -0.533 4.533 11 H 0.049 0.951 12 C 0.016 3.984 13 N -0.941 5.941 14 Si 0.940 3.060 15 H -0.267 1.267 16 H -0.276 1.276 17 H -0.259 1.259 18 N -0.578 5.578 19 C 0.556 3.444 20 O -0.448 6.448 21 C -0.159 4.159 22 C -0.054 4.054 23 C -0.084 4.084 24 C -0.086 4.086 25 C -0.044 4.044 26 C -0.163 4.163 27 C 0.576 3.424 28 O -0.495 6.495 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.018 0.982 37 H 0.013 0.987 38 H 0.269 0.731 39 H 0.146 0.854 40 H 0.176 0.824 41 H 0.180 0.820 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.212 18.042 25.272 31.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.045 3.955 3 H 0.163 0.837 4 C -0.034 4.034 5 O -0.243 6.243 6 C 0.312 3.688 7 O -0.435 6.435 8 C -0.124 4.124 9 C -0.032 4.032 10 C -0.570 4.570 11 H 0.067 0.933 12 C -0.182 4.182 13 N -0.581 5.581 14 Si 0.764 3.236 15 H -0.192 1.192 16 H -0.202 1.202 17 H -0.183 1.183 18 N -0.321 5.321 19 C 0.345 3.655 20 O -0.318 6.318 21 C -0.163 4.163 22 C -0.073 4.073 23 C -0.102 4.102 24 C -0.104 4.104 25 C -0.063 4.063 26 C -0.167 4.167 27 C 0.367 3.633 28 O -0.369 6.369 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.115 0.885 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.036 0.964 37 H 0.032 0.968 38 H 0.078 0.922 39 H 0.164 0.836 40 H 0.193 0.807 41 H 0.198 0.802 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.226 18.284 24.478 30.844 hybrid contribution 0.379 0.015 -1.244 1.301 sum 4.605 18.300 23.234 29.931 Atomic orbital electron populations 1.22099 0.91471 1.03910 1.04367 1.21649 0.97420 0.96722 0.79752 0.83747 1.23616 0.98296 0.81842 0.99636 1.86843 1.65916 1.26555 1.44995 1.24305 0.77880 0.88657 0.77918 1.90600 1.35525 1.74735 1.42657 1.21235 1.02705 0.87254 1.01221 1.19300 0.96044 0.94350 0.93537 1.21311 1.28066 0.98376 1.09282 0.93295 1.25800 0.97628 0.94818 1.00001 1.70019 1.46144 1.09867 1.32105 0.85808 0.79598 0.79547 0.78658 1.19226 1.20156 1.18317 1.46834 1.48021 1.13894 1.23392 1.18823 0.79978 0.81078 0.85651 1.90881 1.34594 1.52105 1.54185 1.20654 1.02316 0.97101 0.96231 1.21150 0.96582 0.96281 0.93299 1.21931 0.93496 1.00280 0.94474 1.21938 0.97257 0.90855 1.00309 1.21167 0.94256 1.00623 0.90207 1.20569 1.04034 0.93802 0.98255 1.18698 0.76060 0.86603 0.81899 1.90771 1.50997 1.18108 1.77037 0.91956 0.90818 0.88496 0.91779 0.87845 0.87910 0.87342 0.96364 0.96814 0.92211 0.83629 0.80708 0.80222 0.82449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.00 71.98 0.65 -2.39 16 2 C 0.14 3.03 3.34 44.99 0.15 3.18 16 3 H 0.15 2.42 7.58 -2.39 -0.02 2.40 16 4 C 0.04 1.06 5.20 71.98 0.37 1.43 16 5 O -0.33 -10.80 5.87 -43.70 -0.26 -11.06 16 6 C 0.47 18.31 7.96 71.23 0.57 18.88 16 7 O -0.54 -23.89 15.73 21.94 0.35 -23.55 16 8 C -0.09 -3.63 5.75 29.85 0.17 -3.46 16 9 C 0.01 0.27 3.33 29.85 0.10 0.37 16 10 C -0.53 -31.28 9.66 25.60 0.25 -31.03 16 11 H 0.05 3.05 7.99 -2.91 -0.02 3.03 16 12 C 0.02 0.93 5.47 84.65 0.46 1.39 16 13 N -0.94 -59.20 13.96 21.45 0.30 -58.90 16 14 Si 0.94 46.51 27.47 68.60 1.88 48.40 16 15 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 16 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 17 H -0.26 -12.62 6.54 99.48 0.65 -11.97 16 18 N -0.58 -13.62 2.52 -740.46 -1.87 -15.49 16 19 C 0.56 14.48 7.30 86.82 0.63 15.11 16 20 O -0.45 -14.20 13.48 19.59 0.26 -13.94 16 21 C -0.16 -3.25 6.41 -20.00 -0.13 -3.38 16 22 C -0.05 -0.80 10.09 22.44 0.23 -0.57 16 23 C -0.08 -0.63 10.04 22.36 0.22 -0.40 16 24 C -0.09 -0.50 10.04 22.36 0.22 -0.28 16 25 C -0.04 -0.49 10.09 22.44 0.23 -0.26 16 26 C -0.16 -3.01 6.40 -20.00 -0.13 -3.14 16 27 C 0.58 13.09 8.02 86.82 0.70 13.78 16 28 O -0.49 -12.76 17.43 -3.54 -0.06 -12.82 16 29 H 0.06 1.52 6.26 -2.39 -0.01 1.51 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.76 8.13 -2.39 -0.02 1.74 16 33 H 0.10 2.38 8.13 -2.39 -0.02 2.36 16 34 H 0.10 4.19 8.14 -2.38 -0.02 4.17 16 35 H 0.11 4.28 8.14 -2.39 -0.02 4.26 16 36 H 0.02 0.94 7.15 -2.38 -0.02 0.92 16 37 H 0.01 0.70 7.53 -2.39 -0.02 0.68 16 38 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 39 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 40 H 0.18 0.15 8.06 -2.91 -0.02 0.13 16 41 H 0.18 -0.30 8.06 -2.91 -0.02 -0.33 16 42 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -79.24 361.22 6.30 -72.94 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 0.99 Total: 5.18 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 4.70 Total: 9.23 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -1.57 Total: -74.39 kcal Atomic # 8 Polarization: -61.66 SS G_CDS: 0.29 Total: -61.37 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.88 Total: 48.40 kcal Total: -79.24 6.30 -72.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813087994.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.335 kcal (2) G-P(sol) polarization free energy of solvation -79.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds