Wall clock time and date at job start Tue Mar 31 2020 16:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33476 * 116.93629 * 2 1 4 4 C 1.41797 * 119.80323 * 0.91188 * 3 2 1 5 5 O 1.21742 * 119.99406 * 267.68999 * 4 3 2 6 6 N 1.34767 * 120.00165 * 87.69460 * 4 3 2 7 7 C 1.46507 * 120.00274 * 185.59291 * 6 4 3 8 8 C 1.52992 * 109.47261 * 179.97438 * 7 6 4 9 9 C 1.53003 * 109.47516 * 299.99879 * 8 7 6 10 10 C 1.52997 * 109.47241 * 60.00075 * 8 7 6 11 11 C 1.53006 * 109.46877 * 180.02562 * 8 7 6 12 12 C 1.50703 * 109.46901 * 180.02562 * 11 8 7 13 13 H 1.08002 * 120.00059 * 0.02562 * 12 11 8 14 14 C 1.37877 * 119.99712 * 179.97438 * 12 11 8 15 15 N 1.31507 * 120.00240 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99903 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47029 * 60.00308 * 16 14 12 18 18 H 1.48493 * 109.46992 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47134 * 300.00423 * 16 14 12 20 20 S 1.76677 * 120.39467 * 181.18355 * 3 2 1 21 21 O 1.42103 * 104.57315 * 102.32858 * 20 3 2 22 22 O 1.42100 * 104.57532 * 230.80648 * 20 3 2 23 23 C 1.82368 * 102.64324 * 346.42837 * 20 3 2 24 24 C 1.53850 * 106.82852 * 43.14344 * 23 20 3 25 25 O 1.33132 * 116.93872 * 180.02562 * 2 1 3 26 26 H 1.09004 * 109.46891 * 88.96588 * 1 2 3 27 27 H 1.09004 * 109.47316 * 208.95957 * 1 2 3 28 28 H 1.08995 * 109.47526 * 328.96562 * 1 2 3 29 29 H 0.96999 * 120.00316 * 5.59393 * 6 4 3 30 30 H 1.09002 * 109.46658 * 300.00130 * 7 6 4 31 31 H 1.09006 * 109.46663 * 59.99572 * 7 6 4 32 32 H 1.09001 * 109.46854 * 60.00133 * 9 8 7 33 33 H 1.08991 * 109.47256 * 180.02562 * 9 8 7 34 34 H 1.08998 * 109.46716 * 300.00679 * 9 8 7 35 35 H 1.09000 * 109.47294 * 60.00221 * 10 8 7 36 36 H 1.09001 * 109.47253 * 179.97438 * 10 8 7 37 37 H 1.08991 * 109.47176 * 299.99851 * 10 8 7 38 38 H 1.08997 * 109.46721 * 299.99551 * 11 8 7 39 39 H 1.08993 * 109.47227 * 59.99916 * 11 8 7 40 40 H 0.97003 * 120.00469 * 179.97438 * 15 14 12 41 41 H 1.08995 * 110.18531 * 283.73581 * 23 20 3 42 42 H 1.08999 * 109.93696 * 162.41016 * 23 20 3 43 43 H 1.09005 * 109.53992 * 175.91587 * 24 23 20 44 44 H 1.09001 * 109.61807 * 55.69403 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1116 1.1899 0.0000 4 6 1.3341 2.3756 0.0196 5 8 1.0210 2.9153 -1.0257 6 7 0.9419 2.9048 1.1953 7 6 0.0379 4.0577 1.2145 8 6 -0.2481 4.4574 2.6633 9 6 -0.9020 3.2844 3.3965 10 6 1.0636 4.8262 3.3591 11 6 -1.1927 5.6609 2.6832 12 6 -1.4740 6.0550 4.1104 13 1 -1.0237 5.5027 4.9219 14 6 -2.3052 7.1215 4.3799 15 7 -2.8531 7.7944 3.3918 16 14 -2.6545 7.6096 6.1489 17 1 -1.3813 7.9676 6.8242 18 1 -3.5711 8.7777 6.1683 19 1 -3.2891 6.4712 6.8605 20 16 3.8749 1.2967 -0.0315 21 8 4.1893 1.6239 -1.3781 22 8 4.1991 2.1758 1.0369 23 6 4.3851 -0.4097 0.3608 24 6 3.4744 -1.3451 -0.4531 25 8 2.1101 -1.1869 -0.0005 26 1 -0.3633 0.0185 -1.0275 27 1 -0.3634 -0.8992 0.4976 28 1 -0.3634 0.8805 0.5298 29 1 1.2580 2.5226 2.0288 30 1 0.5036 4.8932 0.6918 31 1 -0.8968 3.7947 0.7191 32 1 -0.2295 2.4267 3.3822 33 1 -1.1062 3.5693 4.4285 34 1 -1.8365 3.0216 2.9007 35 1 1.5294 5.6620 2.8369 36 1 0.8597 5.1115 4.3912 37 1 1.7361 3.9686 3.3448 38 1 -0.7272 6.4967 2.1609 39 1 -2.1271 5.3977 2.1877 40 1 -3.4382 8.5445 3.5814 41 1 4.2609 -0.6039 1.4261 42 1 5.4257 -0.5617 0.0741 43 1 3.7894 -2.3784 -0.3070 44 1 3.5395 -1.0901 -1.5108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813706617.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:22 Heat of formation + Delta-G solvation = -128.201523 kcal Electronic energy + Delta-G solvation = -27583.392977 eV Core-core repulsion = 23629.154165 eV Total energy + Delta-G solvation = -3954.238812 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.96049 -39.57434 -37.36018 -37.09223 -36.21642 -34.25881 -33.44471 -32.41712 -31.88703 -28.89085 -27.06618 -26.45235 -26.21552 -25.28710 -23.09819 -21.79501 -20.50572 -19.31550 -18.79430 -18.27584 -17.60922 -17.14419 -16.33369 -16.10939 -15.87568 -15.82273 -15.44898 -14.83639 -14.55435 -14.46757 -13.93130 -13.78693 -13.55696 -13.45325 -13.06724 -12.75633 -12.73041 -12.60699 -12.40203 -12.29874 -12.20416 -12.08053 -12.02028 -11.25726 -11.12503 -11.02528 -10.95723 -10.83724 -10.58184 -10.37261 -10.23708 -10.02340 -9.82419 -9.54055 -9.13573 -8.89676 -8.66743 -8.32577 -5.96713 -3.97852 -0.45679 0.74074 1.97167 2.30352 2.77111 3.15998 3.34319 3.39595 3.40834 3.42541 3.66983 3.86435 4.14881 4.27847 4.44751 4.48392 4.63232 4.68968 4.83995 5.01534 5.09379 5.17462 5.38752 5.56460 5.62118 5.67714 5.81332 6.21585 6.30277 6.32336 6.45994 6.50438 6.61485 6.69205 6.82042 7.10172 7.14540 7.17623 7.67523 7.77118 7.80678 8.02180 8.40605 8.45437 9.06756 9.65005 11.14763 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.023687 B = 0.002905 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.818684 B = 9637.217588 C = 9830.568499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.277 3.723 3 C -0.837 4.837 4 C 0.595 3.405 5 O -0.531 6.531 6 N -0.709 5.709 7 C 0.125 3.875 8 C -0.073 4.073 9 C -0.127 4.127 10 C -0.130 4.130 11 C 0.037 3.963 12 C -0.511 4.511 13 H 0.059 0.941 14 C 0.056 3.944 15 N -0.895 5.895 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.278 1.278 20 S 2.498 3.502 21 O -0.915 6.915 22 O -0.914 6.914 23 C -0.654 4.654 24 C 0.070 3.930 25 O -0.302 6.302 26 H 0.106 0.894 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.401 0.599 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.028 0.972 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.033 0.967 38 H 0.019 0.981 39 H 0.018 0.982 40 H 0.260 0.740 41 H 0.154 0.846 42 H 0.159 0.841 43 H 0.142 0.858 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.404 -23.951 -5.905 28.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.224 3.776 3 C -0.928 4.928 4 C 0.379 3.621 5 O -0.408 6.408 6 N -0.361 5.361 7 C 0.002 3.998 8 C -0.073 4.073 9 C -0.184 4.184 10 C -0.187 4.187 11 C -0.001 4.001 12 C -0.549 4.549 13 H 0.077 0.923 14 C -0.145 4.145 15 N -0.534 5.534 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.204 1.204 20 S 2.673 3.327 21 O -0.912 6.912 22 O -0.911 6.911 23 C -0.781 4.781 24 C -0.004 4.004 25 O -0.212 6.212 26 H 0.125 0.875 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.237 0.763 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.070 0.930 41 H 0.172 0.828 42 H 0.177 0.823 43 H 0.160 0.840 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.452 -22.867 -6.804 27.389 hybrid contribution -0.343 -0.332 1.515 1.588 sum 13.108 -23.199 -5.289 27.166 Atomic orbital electron populations 1.21460 0.86694 1.05806 1.05652 1.20777 0.95299 0.82379 0.79123 1.30417 1.27036 1.00080 1.35219 1.15332 0.79685 0.82542 0.84550 1.90848 1.56077 1.61822 1.32059 1.46262 1.48667 1.33320 1.07865 1.21709 0.92271 0.87023 0.98783 1.20915 0.97225 0.98243 0.90966 1.21769 0.98927 0.95741 1.02011 1.21779 0.95482 0.99536 1.01907 1.19084 0.93074 0.90499 0.97408 1.21156 1.27775 1.13810 0.92184 0.92291 1.25008 0.96162 0.96547 0.96756 1.69951 1.31938 1.20639 1.30920 0.86711 0.78132 0.77958 0.85489 1.20315 1.21437 1.20373 1.05702 0.74430 0.76831 0.75689 1.93641 1.82561 1.80451 1.34524 1.93639 1.82345 1.58931 1.56210 1.31101 1.11114 1.23786 1.12127 1.23479 0.75957 1.03024 0.97934 1.85555 1.29568 1.28408 1.77673 0.87541 0.88905 0.87904 0.76270 0.91453 0.91667 0.95258 0.91379 0.93404 0.93250 0.91483 0.94820 0.96281 0.96377 0.93005 0.82779 0.82322 0.84033 0.88315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.53 36.01 0.34 -0.84 16 2 C 0.28 2.53 6.69 -35.97 -0.24 2.29 16 3 C -0.84 -10.30 5.35 -39.89 -0.21 -10.52 16 4 C 0.59 9.78 4.94 -14.90 -0.07 9.70 16 5 O -0.53 -10.84 17.10 5.15 0.09 -10.75 16 6 N -0.71 -11.25 4.56 -63.17 -0.29 -11.53 16 7 C 0.12 2.30 4.57 -4.04 -0.02 2.28 16 8 C -0.07 -1.42 0.54 -154.51 -0.08 -1.51 16 9 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 10 C -0.13 -2.44 8.05 37.16 0.30 -2.14 16 11 C 0.04 0.91 4.04 -27.88 -0.11 0.80 16 12 C -0.51 -13.69 7.65 -34.44 -0.26 -13.95 16 13 H 0.06 1.51 5.68 -52.49 -0.30 1.22 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 16 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 S 2.50 26.92 5.46 -107.50 -0.59 26.34 16 21 O -0.91 -13.02 17.97 -57.49 -1.03 -14.06 16 22 O -0.91 -12.80 17.87 -57.49 -1.03 -13.83 16 23 C -0.65 -2.67 6.87 37.60 0.26 -2.41 16 24 C 0.07 0.25 7.00 37.60 0.26 0.51 16 25 O -0.30 -1.90 9.94 -11.77 -0.12 -2.02 16 26 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.10 1.06 6.40 -51.93 -0.33 0.73 16 29 H 0.40 5.58 6.13 -40.82 -0.25 5.33 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 33 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 37 H 0.03 0.54 6.86 -51.93 -0.36 0.19 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 41 H 0.15 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.16 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.14 0.03 8.14 -51.93 -0.42 -0.40 16 44 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 366.94 15.07 5.53 5.53 Total: -1.00 -38.04 366.94 -7.85 -45.89 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.49 Total: 0.21 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 0.36 Total: -16.21 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.45 Total: -37.44 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -2.09 Total: -40.65 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 26.92 SS G_CDS: -0.59 Total: 26.34 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.04 -7.85 -45.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813706617.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.314 kcal (2) G-P(sol) polarization free energy of solvation -38.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds