Wall clock time and date at job start Tue Mar 31 2020 16:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47201 * 2 1 4 4 C 1.50693 * 109.46952 * 180.02562 * 3 2 1 5 5 O 1.21288 * 120.00231 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99857 * 180.02562 * 4 3 2 7 7 C 1.47602 * 122.42931 * 0.02590 * 6 4 3 8 8 S 1.84141 * 102.65790 * 155.19735 * 7 6 4 9 9 C 1.84214 * 93.88935 * 33.39095 * 8 7 6 10 10 C 1.45505 * 122.42682 * 179.97438 * 6 4 3 11 11 H 1.08996 * 108.63146 * 301.97495 * 10 6 4 12 12 C 1.50700 * 108.75353 * 60.13178 * 10 6 4 13 13 O 1.20825 * 120.00320 * 5.09233 * 12 10 6 14 14 O 1.34234 * 119.99823 * 185.08870 * 12 10 6 15 15 C 1.45194 * 117.00086 * 180.02562 * 14 12 10 16 16 C 1.52993 * 109.47275 * 180.02562 * 15 14 12 17 17 O 1.42898 * 109.47232 * 64.99674 * 16 15 14 18 18 C 1.42902 * 114.00036 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47205 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00317 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99837 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00040 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99754 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47096 * 59.99927 * 23 21 19 25 25 H 1.48494 * 109.46984 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46977 * 299.99683 * 23 21 19 27 27 H 1.09002 * 109.47217 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47170 * 299.99586 * 1 2 3 29 29 H 1.09005 * 109.47311 * 60.00148 * 1 2 3 30 30 H 1.09004 * 109.47187 * 240.00045 * 2 1 3 31 31 H 1.09001 * 109.47100 * 120.00571 * 2 1 3 32 32 H 1.08997 * 109.46720 * 60.00139 * 3 2 1 33 33 H 1.08992 * 109.46999 * 300.00329 * 3 2 1 34 34 H 1.09002 * 110.77131 * 273.45258 * 7 6 4 35 35 H 1.09003 * 110.77705 * 36.87770 * 7 6 4 36 36 H 1.09002 * 111.05238 * 209.75119 * 9 8 7 37 37 H 1.09004 * 111.05251 * 85.81393 * 9 8 7 38 38 H 1.09004 * 109.46940 * 300.00442 * 15 14 12 39 39 H 1.08993 * 109.47253 * 59.99879 * 15 14 12 40 40 H 1.08997 * 109.47558 * 185.00105 * 16 15 14 41 41 H 1.09002 * 109.46950 * 304.99645 * 16 15 14 42 42 H 1.09004 * 109.47313 * 300.00231 * 18 17 16 43 43 H 1.09006 * 109.47005 * 60.00129 * 18 17 16 44 44 H 0.97005 * 119.99536 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4424 -0.0006 5 8 4.1534 0.3920 -0.0015 6 7 4.2209 2.6097 -0.0002 7 6 3.5377 3.9181 0.0014 8 16 4.7973 5.0300 0.7550 9 6 6.2218 4.1165 0.0271 10 6 5.6746 2.6712 -0.0003 11 1 6.0457 2.1392 0.8757 12 6 6.1887 1.9822 -1.2380 13 8 5.4125 1.5780 -2.0710 14 8 7.5091 1.8175 -1.4150 15 6 7.9325 1.1457 -2.6306 16 6 9.4592 1.0506 -2.6554 17 8 9.9017 0.2121 -1.5863 18 6 11.3206 0.0562 -1.5189 19 6 11.6729 -0.8428 -0.3619 20 1 10.8914 -1.2543 0.2596 21 6 12.9929 -1.1399 -0.0967 22 7 13.9446 -0.6391 -0.8538 23 14 13.4295 -2.2548 1.3371 24 1 12.7949 -3.5831 1.1423 25 1 14.9039 -2.4166 1.4072 26 1 12.9367 -1.6513 2.6013 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 3.3036 4.2332 -1.0155 35 1 2.6366 3.8830 0.6137 36 1 7.1017 4.1898 0.6662 37 1 6.4413 4.4716 -0.9799 38 1 7.5057 0.1431 -2.6591 39 1 7.5892 1.7114 -3.4967 40 1 9.7815 0.6271 -3.6066 41 1 9.8872 2.0461 -2.5374 42 1 11.6819 -0.3878 -2.4466 43 1 11.7869 1.0312 -1.3770 44 1 14.8733 -0.8485 -0.6674 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815207499.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:05 Heat of formation + Delta-G solvation = -162.240391 kcal Electronic energy + Delta-G solvation = -26336.131883 eV Core-core repulsion = 22380.417035 eV Total energy + Delta-G solvation = -3955.714848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.12293 -39.69582 -37.26446 -36.59669 -35.94592 -34.72711 -32.79037 -32.20185 -30.04868 -28.30067 -27.84161 -26.94712 -24.83493 -23.02683 -22.37670 -21.90481 -20.99647 -19.60094 -18.20165 -17.87789 -17.32704 -16.71572 -16.48508 -16.41474 -15.87561 -15.69997 -15.34162 -14.80545 -14.62852 -14.45476 -14.31580 -13.98024 -13.82632 -13.60022 -13.37513 -13.06033 -12.69623 -12.62068 -12.49350 -12.20121 -12.08259 -11.96306 -11.48993 -11.44649 -11.36122 -11.05676 -10.94096 -10.83464 -10.75719 -10.44944 -10.40071 -10.11194 -10.03742 -9.31012 -9.14188 -8.87622 -8.38637 -8.21664 -6.11713 -4.13324 1.06206 1.41216 1.96106 2.13596 2.37246 2.83717 3.33255 3.35443 3.39963 3.68458 4.15929 4.32150 4.36327 4.39987 4.51064 4.64227 4.66340 4.70097 4.74923 4.98435 5.03455 5.11580 5.15183 5.18499 5.22960 5.24830 5.37303 5.45480 5.60659 5.72975 5.83333 5.83528 5.90597 6.02879 6.05137 6.50983 6.71596 7.04126 7.38913 7.68778 7.78422 7.82389 8.12391 8.52001 8.99115 9.51425 10.99745 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.012934 B = 0.002584 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.361943 B =10834.157110 C =11565.734266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.133 4.133 4 C 0.532 3.468 5 O -0.508 6.508 6 N -0.608 5.608 7 C 0.152 3.848 8 S -0.252 6.252 9 C -0.058 4.058 10 C 0.142 3.858 11 H 0.129 0.871 12 C 0.456 3.544 13 O -0.495 6.495 14 O -0.337 6.337 15 C 0.076 3.924 16 C 0.062 3.938 17 O -0.390 6.390 18 C 0.195 3.805 19 C -0.515 4.515 20 H 0.066 0.934 21 C 0.056 3.944 22 N -0.899 5.899 23 Si 0.909 3.091 24 H -0.274 1.274 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.122 0.878 36 H 0.142 0.858 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.006 0.994 43 H 0.007 0.993 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.756 12.466 0.285 28.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.173 4.173 4 C 0.320 3.680 5 O -0.381 6.381 6 N -0.346 5.346 7 C -0.082 4.082 8 S -0.025 6.025 9 C -0.207 4.207 10 C 0.035 3.965 11 H 0.146 0.854 12 C 0.295 3.705 13 O -0.382 6.382 14 O -0.252 6.252 15 C 0.003 3.997 16 C -0.015 4.015 17 O -0.310 6.310 18 C 0.121 3.879 19 C -0.554 4.554 20 H 0.085 0.915 21 C -0.145 4.145 22 N -0.538 5.538 23 Si 0.736 3.264 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.199 1.199 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.140 0.860 36 H 0.160 0.840 37 H 0.127 0.873 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.024 0.976 43 H 0.025 0.975 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -25.651 12.625 0.852 28.602 hybrid contribution 0.693 -1.306 -0.472 1.552 sum -24.958 11.319 0.380 27.407 Atomic orbital electron populations 1.21781 0.95253 1.02153 1.01705 1.21316 0.95396 0.94287 1.03990 1.21727 0.90354 1.00818 1.04369 1.20709 0.90503 0.81883 0.74923 1.90790 1.70151 1.30222 1.46950 1.48348 1.03810 1.06407 1.76070 1.24305 0.97348 0.82568 1.03944 1.88495 1.03115 1.42563 1.68341 1.24485 0.99318 0.90637 1.06270 1.20757 0.81865 0.96893 0.96987 0.85362 1.23547 0.81741 0.77494 0.87728 1.90640 1.57520 1.46059 1.44020 1.86562 1.23739 1.70800 1.44098 1.23243 0.95389 0.97489 0.83612 1.22312 0.90673 0.95826 0.92716 1.87938 1.26863 1.67458 1.48711 1.20236 0.74493 0.96126 0.97074 1.21017 0.92298 1.29030 1.13015 0.91537 1.24948 0.95855 0.96473 0.97194 1.69954 1.00205 1.44731 1.38952 0.86379 0.77031 0.80852 0.82144 1.19987 1.21144 1.19950 0.92241 0.92672 0.92661 0.90931 0.91019 0.88687 0.88603 0.88223 0.86038 0.84029 0.87303 0.90382 0.90493 0.91886 0.93171 0.97625 0.97483 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.54 16 2 C -0.11 -0.95 5.22 -26.73 -0.14 -1.09 16 3 C -0.13 -0.99 4.49 -27.89 -0.13 -1.11 16 4 C 0.53 6.35 6.78 -10.99 -0.07 6.27 16 5 O -0.51 -8.54 14.81 -11.60 -0.17 -8.71 16 6 N -0.61 -6.28 2.73 -169.12 -0.46 -6.74 16 7 C 0.15 1.00 7.21 60.45 0.44 1.44 16 8 S -0.25 -2.03 23.44 -107.50 -2.52 -4.54 16 9 C -0.06 -0.50 6.98 37.98 0.27 -0.24 16 10 C 0.14 1.66 2.95 -68.80 -0.20 1.45 16 11 H 0.13 1.56 8.14 -51.93 -0.42 1.14 16 12 C 0.46 6.95 6.38 36.01 0.23 7.18 16 13 O -0.50 -8.57 14.64 -24.73 -0.36 -8.93 16 14 O -0.34 -5.61 10.13 -42.04 -0.43 -6.04 16 15 C 0.08 1.24 5.84 37.15 0.22 1.46 16 16 C 0.06 1.15 6.33 37.15 0.24 1.38 16 17 O -0.39 -9.58 10.30 -38.81 -0.40 -9.98 16 18 C 0.19 5.36 5.69 36.01 0.20 5.57 16 19 C -0.52 -15.38 9.43 -34.44 -0.32 -15.70 16 20 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 22 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 23 Si 0.91 22.09 29.54 -169.99 -5.02 17.07 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 31 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 32 H 0.09 0.46 7.63 -51.93 -0.40 0.06 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.12 0.48 7.13 -51.93 -0.37 0.11 16 36 H 0.14 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.11 0.88 7.85 -51.93 -0.41 0.47 16 38 H 0.08 1.36 8.13 -51.93 -0.42 0.94 16 39 H 0.08 1.03 8.13 -51.93 -0.42 0.60 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 43 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 383.65 15.07 5.78 5.78 Total: -1.00 -36.71 383.65 -8.91 -45.61 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -7.06 Total: -4.94 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 0.99 Total: 7.62 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.27 Total: -32.95 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -1.36 Total: -33.65 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: -2.03 SS G_CDS: -2.52 Total: -4.54 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.71 -8.91 -45.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815207499.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.625 kcal (2) G-P(sol) polarization free energy of solvation -36.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds