Wall clock time and date at job start Tue Mar 31 2020 16:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47201 * 2 1 4 4 C 1.50693 * 109.46952 * 180.02562 * 3 2 1 5 5 O 1.21288 * 120.00231 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99857 * 180.02562 * 4 3 2 7 7 C 1.47602 * 122.42931 * 0.02590 * 6 4 3 8 8 S 1.84141 * 102.65790 * 155.19735 * 7 6 4 9 9 C 1.84214 * 93.88935 * 33.39095 * 8 7 6 10 10 C 1.45505 * 122.42682 * 179.97438 * 6 4 3 11 11 H 1.08996 * 108.63146 * 301.97495 * 10 6 4 12 12 C 1.50700 * 108.75353 * 60.13178 * 10 6 4 13 13 O 1.20825 * 120.00320 * 5.09233 * 12 10 6 14 14 O 1.34234 * 119.99823 * 185.08870 * 12 10 6 15 15 C 1.45194 * 117.00086 * 180.02562 * 14 12 10 16 16 C 1.52993 * 109.47275 * 180.02562 * 15 14 12 17 17 O 1.42898 * 109.47232 * 64.99674 * 16 15 14 18 18 C 1.42902 * 114.00036 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47205 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00317 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99837 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00040 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99754 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47096 * 59.99927 * 23 21 19 25 25 H 1.48494 * 109.46984 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46977 * 299.99683 * 23 21 19 27 27 H 1.09002 * 109.47217 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47170 * 299.99586 * 1 2 3 29 29 H 1.09005 * 109.47311 * 60.00148 * 1 2 3 30 30 H 1.09004 * 109.47187 * 240.00045 * 2 1 3 31 31 H 1.09001 * 109.47100 * 120.00571 * 2 1 3 32 32 H 1.08997 * 109.46720 * 60.00139 * 3 2 1 33 33 H 1.08992 * 109.46999 * 300.00329 * 3 2 1 34 34 H 1.09002 * 110.77131 * 273.45258 * 7 6 4 35 35 H 1.09003 * 110.77705 * 36.87770 * 7 6 4 36 36 H 1.09002 * 111.05238 * 209.75119 * 9 8 7 37 37 H 1.09004 * 111.05251 * 85.81393 * 9 8 7 38 38 H 1.09004 * 109.46940 * 300.00442 * 15 14 12 39 39 H 1.08993 * 109.47253 * 59.99879 * 15 14 12 40 40 H 1.08997 * 109.47558 * 185.00105 * 16 15 14 41 41 H 1.09002 * 109.46950 * 304.99645 * 16 15 14 42 42 H 1.09004 * 109.47313 * 300.00231 * 18 17 16 43 43 H 1.09006 * 109.47005 * 60.00129 * 18 17 16 44 44 H 0.97005 * 119.99536 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4424 -0.0006 5 8 4.1534 0.3920 -0.0015 6 7 4.2209 2.6097 -0.0002 7 6 3.5377 3.9181 0.0014 8 16 4.7973 5.0300 0.7550 9 6 6.2218 4.1165 0.0271 10 6 5.6746 2.6712 -0.0003 11 1 6.0457 2.1392 0.8757 12 6 6.1887 1.9822 -1.2380 13 8 5.4125 1.5780 -2.0710 14 8 7.5091 1.8175 -1.4150 15 6 7.9325 1.1457 -2.6306 16 6 9.4592 1.0506 -2.6554 17 8 9.9017 0.2121 -1.5863 18 6 11.3206 0.0562 -1.5189 19 6 11.6729 -0.8428 -0.3619 20 1 10.8914 -1.2543 0.2596 21 6 12.9929 -1.1399 -0.0967 22 7 13.9446 -0.6391 -0.8538 23 14 13.4295 -2.2548 1.3371 24 1 12.7949 -3.5831 1.1423 25 1 14.9039 -2.4166 1.4072 26 1 12.9367 -1.6513 2.6013 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 3.3036 4.2332 -1.0155 35 1 2.6366 3.8830 0.6137 36 1 7.1017 4.1898 0.6662 37 1 6.4413 4.4716 -0.9799 38 1 7.5057 0.1431 -2.6591 39 1 7.5892 1.7114 -3.4967 40 1 9.7815 0.6271 -3.6066 41 1 9.8872 2.0461 -2.5374 42 1 11.6819 -0.3878 -2.4466 43 1 11.7869 1.0312 -1.3770 44 1 14.8733 -0.8485 -0.6674 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815207499.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:04 Heat of formation + Delta-G solvation = -185.658211 kcal Electronic energy + Delta-G solvation = -26337.147356 eV Core-core repulsion = 22380.417035 eV Total energy + Delta-G solvation = -3956.730321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.19054 -40.77201 -38.82499 -37.82400 -37.23056 -35.41455 -34.97507 -33.08556 -31.56937 -29.11715 -28.87899 -28.48944 -25.78768 -24.59153 -23.99988 -23.05303 -21.92324 -20.48837 -19.29609 -18.82022 -18.61563 -18.28190 -17.79302 -17.66791 -17.08127 -16.78911 -16.53331 -16.27254 -16.26889 -15.60389 -15.20299 -15.07783 -14.86153 -14.51559 -14.45806 -14.11172 -14.02580 -13.72064 -13.42059 -13.26040 -13.15425 -12.96104 -12.89245 -12.72893 -12.71896 -12.50622 -12.27681 -12.04689 -11.99869 -11.83396 -11.66592 -11.45209 -11.32321 -11.02471 -10.91517 -10.30645 -10.17445 -8.99606 -8.34551 -6.46668 0.44511 0.72336 0.96029 1.09099 1.38341 1.42789 1.51294 1.52812 1.81014 2.32540 2.90567 2.99139 3.01453 3.34300 3.44916 3.75218 3.85360 3.90431 3.95943 4.04043 4.10535 4.21346 4.28408 4.33599 4.33941 4.45120 4.50645 4.59653 4.67341 4.68291 4.78944 4.82246 4.91792 5.15030 5.21878 5.24643 5.25727 5.44376 5.51592 5.91594 5.92721 6.45752 6.51466 6.76843 6.92214 7.24748 8.77281 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.012934 B = 0.002584 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.361943 B =10834.157110 C =11565.734266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C -0.124 4.124 4 C 0.523 3.477 5 O -0.570 6.570 6 N -0.607 5.607 7 C 0.152 3.848 8 S -0.253 6.253 9 C -0.054 4.054 10 C 0.143 3.857 11 H 0.117 0.883 12 C 0.453 3.547 13 O -0.519 6.519 14 O -0.351 6.351 15 C 0.081 3.919 16 C 0.055 3.945 17 O -0.412 6.412 18 C 0.209 3.791 19 C -0.553 4.553 20 H 0.056 0.944 21 C 0.009 3.991 22 N -0.927 5.927 23 Si 0.981 3.019 24 H -0.268 1.268 25 H -0.271 1.271 26 H -0.266 1.266 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.132 0.868 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.157 0.843 36 H 0.150 0.850 37 H 0.116 0.884 38 H 0.060 0.940 39 H 0.112 0.888 40 H 0.082 0.918 41 H 0.064 0.936 42 H -0.008 1.008 43 H -0.007 1.007 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.428 13.911 1.079 30.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C -0.163 4.163 4 C 0.313 3.687 5 O -0.448 6.448 6 N -0.344 5.344 7 C -0.080 4.080 8 S -0.026 6.026 9 C -0.203 4.203 10 C 0.035 3.965 11 H 0.135 0.865 12 C 0.294 3.706 13 O -0.407 6.407 14 O -0.267 6.267 15 C 0.007 3.993 16 C -0.022 4.022 17 O -0.332 6.332 18 C 0.134 3.866 19 C -0.591 4.591 20 H 0.075 0.925 21 C -0.189 4.189 22 N -0.566 5.566 23 Si 0.803 3.197 24 H -0.193 1.193 25 H -0.196 1.196 26 H -0.190 1.190 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.150 0.850 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.174 0.826 36 H 0.168 0.832 37 H 0.134 0.866 38 H 0.078 0.922 39 H 0.130 0.870 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.010 0.990 43 H 0.011 0.989 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -27.353 14.131 1.637 30.831 hybrid contribution 1.160 -1.698 -0.783 2.201 sum -26.193 12.432 0.854 29.006 Atomic orbital electron populations 1.21735 0.92887 1.02449 1.03106 1.21288 0.97325 0.94818 1.01696 1.21827 0.86775 1.00562 1.07182 1.21641 0.92297 0.81312 0.73454 1.90763 1.71609 1.32511 1.49885 1.48489 1.03325 1.07625 1.74980 1.24683 0.97549 0.80015 1.05717 1.88535 1.03028 1.42522 1.68533 1.24460 0.99993 0.88683 1.07130 1.20865 0.83027 0.98245 0.94375 0.86541 1.24299 0.80882 0.76921 0.88492 1.90615 1.57750 1.47134 1.45235 1.86560 1.24953 1.70852 1.44324 1.23190 0.93742 0.97347 0.85007 1.22642 0.92086 0.95614 0.91820 1.87882 1.24965 1.69029 1.51314 1.19869 0.76085 0.94820 0.95806 1.21345 0.92938 1.30545 1.14227 0.92523 1.25913 0.95357 0.97651 1.00025 1.70045 1.00784 1.45407 1.40361 0.85275 0.77402 0.78626 0.78376 1.19319 1.19607 1.19043 0.92630 0.90924 0.91479 0.93872 0.92905 0.85043 0.86088 0.86422 0.82564 0.83210 0.86574 0.92179 0.87010 0.90014 0.91812 0.99035 0.98884 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.91 71.98 0.71 -0.73 16 2 C -0.11 -1.88 5.22 30.59 0.16 -1.72 16 3 C -0.12 -1.58 4.49 29.85 0.13 -1.44 16 4 C 0.52 12.25 6.78 87.65 0.59 12.85 16 5 O -0.57 -20.09 14.81 13.34 0.20 -19.89 16 6 N -0.61 -11.79 2.73 -807.34 -2.20 -13.99 16 7 C 0.15 1.53 7.21 127.56 0.92 2.45 16 8 S -0.25 -3.49 23.44 -56.49 -1.32 -4.82 16 9 C -0.05 -0.88 6.98 72.51 0.51 -0.37 16 10 C 0.14 3.31 2.95 44.96 0.13 3.45 16 11 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 12 C 0.45 14.04 6.38 71.24 0.45 14.50 16 13 O -0.52 -18.21 14.64 27.68 0.41 -17.81 16 14 O -0.35 -11.92 10.13 -48.80 -0.49 -12.42 16 15 C 0.08 2.64 5.84 71.98 0.42 3.06 16 16 C 0.06 2.03 6.33 71.98 0.46 2.49 16 17 O -0.41 -20.83 10.30 -145.56 -1.50 -22.33 16 18 C 0.21 11.87 5.69 71.24 0.41 12.28 16 19 C -0.55 -33.75 9.43 25.60 0.24 -33.51 16 20 H 0.06 3.47 7.81 -2.91 -0.02 3.45 16 21 C 0.01 0.55 5.46 84.66 0.46 1.01 16 22 N -0.93 -55.82 13.29 21.45 0.28 -55.53 16 23 Si 0.98 45.18 29.54 68.60 2.03 47.20 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.04 0.95 8.10 -2.38 -0.02 0.93 16 31 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 32 H 0.13 0.73 7.63 -2.39 -0.02 0.71 16 33 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.16 0.50 7.13 -2.39 -0.02 0.48 16 36 H 0.15 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.12 1.72 7.85 -2.38 -0.02 1.70 16 38 H 0.06 2.18 8.13 -2.39 -0.02 2.16 16 39 H 0.11 2.87 8.13 -2.39 -0.02 2.85 16 40 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 42 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 43 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 44 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -82.69 383.65 3.97 -78.72 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 0.98 Total: 6.56 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 5.60 Total: 14.31 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -1.92 Total: -69.53 kcal Atomic # 8 Polarization: -71.05 SS G_CDS: -1.39 Total: -72.44 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.32 Total: -4.82 kcal Total: -82.69 3.97 -78.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815207499.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.939 kcal (2) G-P(sol) polarization free energy of solvation -82.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds