Wall clock time and date at job start Tue Mar 31 2020 16:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47274 * 2 1 4 4 C 1.50708 * 109.46707 * 179.97438 * 3 2 1 5 5 O 1.21275 * 119.99927 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99624 * 179.97438 * 4 3 2 7 7 C 1.47597 * 122.42914 * 359.97360 * 6 4 3 8 8 S 1.84080 * 102.63570 * 204.83196 * 7 6 4 9 9 C 1.84214 * 93.90826 * 326.56240 * 8 7 6 10 10 C 1.45498 * 122.42754 * 179.97438 * 6 4 3 11 11 H 1.08999 * 108.75128 * 57.93154 * 10 6 4 12 12 C 1.50701 * 108.75725 * 299.71015 * 10 6 4 13 13 O 1.20829 * 119.99721 * 359.97438 * 12 10 6 14 14 O 1.34222 * 120.00308 * 179.97438 * 12 10 6 15 15 C 1.45195 * 117.00364 * 179.97438 * 14 12 10 16 16 C 1.52996 * 109.47498 * 180.02562 * 15 14 12 17 17 O 1.42900 * 109.47042 * 65.00198 * 16 15 14 18 18 C 1.42901 * 114.00017 * 180.02562 * 17 16 15 19 19 C 1.50706 * 109.47038 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99917 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99901 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99995 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99893 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47341 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47084 * 119.99754 * 23 21 19 26 26 H 1.48503 * 109.46940 * 239.99532 * 23 21 19 27 27 H 1.08998 * 109.47624 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47484 * 300.00753 * 1 2 3 29 29 H 1.09008 * 109.46510 * 60.00052 * 1 2 3 30 30 H 1.09003 * 109.47484 * 239.99247 * 2 1 3 31 31 H 1.09008 * 109.46510 * 119.99948 * 2 1 3 32 32 H 1.08992 * 109.47225 * 59.99671 * 3 2 1 33 33 H 1.08995 * 109.46948 * 299.99500 * 3 2 1 34 34 H 1.09004 * 110.77865 * 86.54633 * 7 6 4 35 35 H 1.08997 * 110.94133 * 323.18793 * 7 6 4 36 36 H 1.09000 * 111.04980 * 150.26935 * 9 8 7 37 37 H 1.09000 * 111.04950 * 274.24641 * 9 8 7 38 38 H 1.09008 * 109.47496 * 300.00122 * 15 14 12 39 39 H 1.09003 * 109.47339 * 59.99837 * 15 14 12 40 40 H 1.08998 * 109.47508 * 184.99668 * 16 15 14 41 41 H 1.08999 * 109.47162 * 305.00005 * 16 15 14 42 42 H 1.08996 * 109.47208 * 299.99631 * 18 17 16 43 43 H 1.08996 * 109.47528 * 60.00129 * 18 17 16 44 44 H 0.97000 * 119.99909 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4423 0.0006 5 8 4.1534 0.3920 0.0015 6 7 4.2211 2.6095 0.0002 7 6 3.5380 3.9179 -0.0014 8 16 4.7973 5.0287 -0.7556 9 6 6.2220 4.1162 -0.0270 10 6 5.6747 2.6711 0.0013 11 1 6.0487 2.1377 -0.8726 12 6 6.1878 1.9860 1.2417 13 8 5.4103 1.5035 2.0308 14 8 7.5084 1.9119 1.4699 15 6 7.9307 1.2381 2.6848 16 6 9.4581 1.2537 2.7722 17 8 9.9137 2.6011 2.9093 18 6 11.3342 2.7281 2.9993 19 6 11.7005 4.1830 3.1410 20 1 10.9260 4.9355 3.1600 21 6 13.0245 4.5536 3.2453 22 7 13.9676 3.6373 3.2217 23 14 13.4785 6.3569 3.4217 24 1 12.2430 7.1808 3.4219 25 1 14.2099 6.5607 4.6979 26 1 14.3436 6.7630 2.2851 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6768 1.9562 -0.8900 34 1 3.3037 4.2331 1.0154 35 1 2.6357 3.8855 -0.6121 36 1 7.1020 4.1894 -0.6661 37 1 6.4408 4.4716 0.9800 38 1 7.5124 1.7528 3.5500 39 1 7.5777 0.2070 2.6699 40 1 9.7786 0.6721 3.6365 41 1 9.8783 0.8185 1.8654 42 1 11.6939 2.1770 3.8681 43 1 11.7930 2.3238 2.0970 44 1 14.8990 3.8980 3.2954 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815207500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:08 Heat of formation + Delta-G solvation = -162.985946 kcal Electronic energy + Delta-G solvation = -26325.406395 eV Core-core repulsion = 22369.659217 eV Total energy + Delta-G solvation = -3955.747178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.12809 -39.70356 -37.26395 -36.60428 -35.95529 -34.75696 -32.81924 -32.17755 -30.04407 -28.31085 -27.81079 -26.97180 -24.79527 -23.03901 -22.40581 -21.91825 -21.00051 -19.62120 -18.16423 -17.87283 -17.31728 -16.72050 -16.50660 -16.43765 -15.90761 -15.67499 -15.28899 -14.80102 -14.73214 -14.36589 -14.27172 -14.02753 -13.82249 -13.58461 -13.38096 -13.01616 -12.71056 -12.61395 -12.47721 -12.17962 -12.10515 -11.96348 -11.52529 -11.47701 -11.33300 -11.09572 -10.94402 -10.89749 -10.75859 -10.42896 -10.41087 -10.13276 -10.05245 -9.31091 -9.14736 -8.91279 -8.30221 -8.24749 -6.14832 -4.16681 1.13836 1.50025 1.95648 2.15776 2.36104 2.82573 3.26765 3.33415 3.39472 3.72352 4.15777 4.29511 4.40291 4.43967 4.48400 4.64544 4.65058 4.72489 4.76181 5.00140 5.09409 5.12936 5.18890 5.21115 5.21853 5.22139 5.34934 5.41076 5.61577 5.68847 5.79432 5.84132 5.90580 5.98036 6.04706 6.50991 6.71225 7.02715 7.36792 7.67398 7.74964 7.81169 8.09268 8.48501 8.95882 9.48213 10.96702 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.018289 B = 0.002508 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.620042 B =11163.194394 C =12405.661734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.134 4.134 4 C 0.535 3.465 5 O -0.514 6.514 6 N -0.607 5.607 7 C 0.150 3.850 8 S -0.252 6.252 9 C -0.059 4.059 10 C 0.145 3.855 11 H 0.126 0.874 12 C 0.454 3.546 13 O -0.493 6.493 14 O -0.337 6.337 15 C 0.077 3.923 16 C 0.062 3.938 17 O -0.391 6.391 18 C 0.194 3.806 19 C -0.514 4.514 20 H 0.067 0.933 21 C 0.055 3.945 22 N -0.898 5.898 23 Si 0.908 3.092 24 H -0.270 1.270 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.121 0.879 36 H 0.142 0.858 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.006 0.994 43 H 0.008 0.992 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.808 -2.864 -8.763 27.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.174 4.174 4 C 0.323 3.677 5 O -0.387 6.387 6 N -0.345 5.345 7 C -0.084 4.084 8 S -0.025 6.025 9 C -0.207 4.207 10 C 0.037 3.963 11 H 0.144 0.856 12 C 0.293 3.707 13 O -0.380 6.380 14 O -0.253 6.253 15 C 0.003 3.997 16 C -0.016 4.016 17 O -0.311 6.311 18 C 0.120 3.880 19 C -0.552 4.552 20 H 0.085 0.915 21 C -0.146 4.146 22 N -0.537 5.537 23 Si 0.735 3.265 24 H -0.195 1.195 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.139 0.861 36 H 0.160 0.840 37 H 0.132 0.868 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.024 0.976 43 H 0.025 0.975 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.713 -2.485 -9.215 27.427 hybrid contribution 0.737 -0.292 1.045 1.312 sum -24.976 -2.777 -8.170 26.424 Atomic orbital electron populations 1.21786 0.95255 1.02117 1.01785 1.21304 0.95403 0.94318 1.03833 1.21734 0.90437 1.00760 1.04451 1.20664 0.90448 0.81855 0.74758 1.90737 1.70257 1.30312 1.47392 1.48356 1.03875 1.06464 1.75847 1.24300 0.97426 0.82533 1.04126 1.88502 1.03145 1.42943 1.67905 1.24535 0.98977 0.90309 1.06894 1.20744 0.81835 0.97202 0.96506 0.85619 1.23581 0.81762 0.77919 0.87486 1.90649 1.57506 1.43362 1.46455 1.86560 1.23734 1.71034 1.43942 1.23239 0.95303 0.96587 0.84542 1.22321 0.90619 0.88185 1.00443 1.87902 1.26647 1.22156 1.94401 1.20247 0.74421 0.97888 0.95470 1.21069 0.92216 0.91725 1.50218 0.91477 1.24960 0.95949 0.98489 0.95174 1.69970 1.00334 1.33067 1.50328 0.86276 0.78526 0.83963 0.77711 1.19466 1.20837 1.20799 0.92277 0.92599 0.92665 0.91139 0.90977 0.88550 0.88683 0.88194 0.86055 0.83975 0.86752 0.90549 0.90346 0.91861 0.93085 0.97615 0.97452 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.11 -0.86 5.22 -26.73 -0.14 -1.00 16 3 C -0.13 -0.95 4.49 -27.88 -0.13 -1.07 16 4 C 0.53 6.07 6.75 -10.98 -0.07 5.99 16 5 O -0.51 -7.95 14.68 -13.67 -0.20 -8.15 16 6 N -0.61 -6.24 2.76 -169.16 -0.47 -6.71 16 7 C 0.15 1.07 7.21 60.45 0.44 1.50 16 8 S -0.25 -2.28 23.43 -107.50 -2.52 -4.80 16 9 C -0.06 -0.59 6.91 37.98 0.26 -0.33 16 10 C 0.14 1.68 2.96 -68.80 -0.20 1.47 16 11 H 0.13 1.38 8.14 -51.93 -0.42 0.96 16 12 C 0.45 6.89 6.55 36.01 0.24 7.12 16 13 O -0.49 -8.55 14.36 -25.28 -0.36 -8.92 16 14 O -0.34 -5.57 10.03 -42.00 -0.42 -5.99 16 15 C 0.08 1.24 5.84 37.16 0.22 1.46 16 16 C 0.06 1.13 6.33 37.16 0.24 1.36 16 17 O -0.39 -9.28 10.30 -38.80 -0.40 -9.68 16 18 C 0.19 5.23 5.69 36.01 0.20 5.44 16 19 C -0.51 -14.94 9.43 -34.44 -0.32 -15.26 16 20 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 21 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 22 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 23 Si 0.91 21.59 29.54 -169.99 -5.02 16.57 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.25 8.14 -51.92 -0.42 -0.17 16 30 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 31 H 0.07 0.69 8.10 -51.92 -0.42 0.27 16 32 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.43 7.63 -51.93 -0.40 0.04 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.12 0.51 7.14 -51.93 -0.37 0.14 16 36 H 0.14 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.11 1.25 7.84 -51.93 -0.41 0.84 16 38 H 0.08 1.25 8.14 -51.92 -0.42 0.82 16 39 H 0.08 1.13 8.13 -51.93 -0.42 0.70 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 43 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 383.23 15.07 5.78 5.78 Total: -1.00 -35.50 383.23 -8.94 -44.44 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -7.06 Total: -4.41 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 0.99 Total: 7.72 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: 0.27 Total: -32.56 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -1.38 Total: -32.73 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -2.28 SS G_CDS: -2.52 Total: -4.80 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.50 -8.94 -44.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815207500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.543 kcal (2) G-P(sol) polarization free energy of solvation -35.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds