Wall clock time and date at job start Tue Mar 31 2020 16:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47274 * 2 1 4 4 C 1.50708 * 109.46707 * 179.97438 * 3 2 1 5 5 O 1.21275 * 119.99927 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99624 * 179.97438 * 4 3 2 7 7 C 1.47597 * 122.42914 * 359.97360 * 6 4 3 8 8 S 1.84080 * 102.63570 * 204.83196 * 7 6 4 9 9 C 1.84214 * 93.90826 * 326.56240 * 8 7 6 10 10 C 1.45498 * 122.42754 * 179.97438 * 6 4 3 11 11 H 1.08999 * 108.75128 * 57.93154 * 10 6 4 12 12 C 1.50701 * 108.75725 * 299.71015 * 10 6 4 13 13 O 1.20829 * 119.99721 * 359.97438 * 12 10 6 14 14 O 1.34222 * 120.00308 * 179.97438 * 12 10 6 15 15 C 1.45195 * 117.00364 * 179.97438 * 14 12 10 16 16 C 1.52996 * 109.47498 * 180.02562 * 15 14 12 17 17 O 1.42900 * 109.47042 * 65.00198 * 16 15 14 18 18 C 1.42901 * 114.00017 * 180.02562 * 17 16 15 19 19 C 1.50706 * 109.47038 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99917 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99901 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99995 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99893 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47341 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47084 * 119.99754 * 23 21 19 26 26 H 1.48503 * 109.46940 * 239.99532 * 23 21 19 27 27 H 1.08998 * 109.47624 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47484 * 300.00753 * 1 2 3 29 29 H 1.09008 * 109.46510 * 60.00052 * 1 2 3 30 30 H 1.09003 * 109.47484 * 239.99247 * 2 1 3 31 31 H 1.09008 * 109.46510 * 119.99948 * 2 1 3 32 32 H 1.08992 * 109.47225 * 59.99671 * 3 2 1 33 33 H 1.08995 * 109.46948 * 299.99500 * 3 2 1 34 34 H 1.09004 * 110.77865 * 86.54633 * 7 6 4 35 35 H 1.08997 * 110.94133 * 323.18793 * 7 6 4 36 36 H 1.09000 * 111.04980 * 150.26935 * 9 8 7 37 37 H 1.09000 * 111.04950 * 274.24641 * 9 8 7 38 38 H 1.09008 * 109.47496 * 300.00122 * 15 14 12 39 39 H 1.09003 * 109.47339 * 59.99837 * 15 14 12 40 40 H 1.08998 * 109.47508 * 184.99668 * 16 15 14 41 41 H 1.08999 * 109.47162 * 305.00005 * 16 15 14 42 42 H 1.08996 * 109.47208 * 299.99631 * 18 17 16 43 43 H 1.08996 * 109.47528 * 60.00129 * 18 17 16 44 44 H 0.97000 * 119.99909 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4423 0.0006 5 8 4.1534 0.3920 0.0015 6 7 4.2211 2.6095 0.0002 7 6 3.5380 3.9179 -0.0014 8 16 4.7973 5.0287 -0.7556 9 6 6.2220 4.1162 -0.0270 10 6 5.6747 2.6711 0.0013 11 1 6.0487 2.1377 -0.8726 12 6 6.1878 1.9860 1.2417 13 8 5.4103 1.5035 2.0308 14 8 7.5084 1.9119 1.4699 15 6 7.9307 1.2381 2.6848 16 6 9.4581 1.2537 2.7722 17 8 9.9137 2.6011 2.9093 18 6 11.3342 2.7281 2.9993 19 6 11.7005 4.1830 3.1410 20 1 10.9260 4.9355 3.1600 21 6 13.0245 4.5536 3.2453 22 7 13.9676 3.6373 3.2217 23 14 13.4785 6.3569 3.4217 24 1 12.2430 7.1808 3.4219 25 1 14.2099 6.5607 4.6979 26 1 14.3436 6.7630 2.2851 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6768 1.9562 -0.8900 34 1 3.3037 4.2331 1.0154 35 1 2.6357 3.8855 -0.6121 36 1 7.1020 4.1894 -0.6661 37 1 6.4408 4.4716 0.9800 38 1 7.5124 1.7528 3.5500 39 1 7.5777 0.2070 2.6699 40 1 9.7786 0.6721 3.6365 41 1 9.8783 0.8185 1.8654 42 1 11.6939 2.1770 3.8681 43 1 11.7930 2.3238 2.0970 44 1 14.8990 3.8980 3.2954 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815207500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:07 Heat of formation + Delta-G solvation = -184.846540 kcal Electronic energy + Delta-G solvation = -26326.354341 eV Core-core repulsion = 22369.659217 eV Total energy + Delta-G solvation = -3956.695124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.18726 -40.75392 -38.81095 -37.79840 -37.23664 -35.39101 -34.95792 -33.08791 -31.55733 -29.10088 -28.86126 -28.49506 -25.77976 -24.58406 -23.99161 -23.04526 -21.91318 -20.49028 -19.25726 -18.81423 -18.60703 -18.27526 -17.82320 -17.65548 -17.07016 -16.78260 -16.47112 -16.35790 -16.15741 -15.60994 -15.19014 -15.07848 -14.92560 -14.49921 -14.28321 -14.17907 -14.01613 -13.79661 -13.35548 -13.25540 -13.15508 -12.92771 -12.86440 -12.73669 -12.70565 -12.51934 -12.27044 -12.03519 -11.99762 -11.81925 -11.64796 -11.43273 -11.27884 -11.00905 -10.91106 -10.30065 -10.16334 -9.00594 -8.32913 -6.44949 0.44208 0.72677 1.01652 1.05239 1.40717 1.41730 1.55194 1.56402 1.80205 2.33809 2.90037 3.00739 3.01265 3.34965 3.45795 3.73985 3.85613 3.91571 3.96408 4.02243 4.11816 4.20650 4.29400 4.33925 4.36582 4.44887 4.52119 4.58728 4.68403 4.70402 4.78898 4.84166 4.92666 5.15967 5.22528 5.25887 5.26203 5.45551 5.53951 5.93231 5.93946 6.46068 6.51742 6.77965 6.93133 7.26522 8.79472 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.018289 B = 0.002508 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.620042 B =11163.194394 C =12405.661734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.127 4.127 4 C 0.526 3.474 5 O -0.565 6.565 6 N -0.608 5.608 7 C 0.152 3.848 8 S -0.255 6.255 9 C -0.057 4.057 10 C 0.148 3.852 11 H 0.130 0.870 12 C 0.451 3.549 13 O -0.517 6.517 14 O -0.351 6.351 15 C 0.081 3.919 16 C 0.056 3.944 17 O -0.405 6.405 18 C 0.207 3.793 19 C -0.546 4.546 20 H 0.062 0.938 21 C 0.006 3.994 22 N -0.930 5.930 23 Si 0.983 3.017 24 H -0.264 1.264 25 H -0.272 1.272 26 H -0.271 1.271 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.117 0.883 33 H 0.131 0.869 34 H 0.112 0.888 35 H 0.160 0.840 36 H 0.149 0.851 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.056 0.944 42 H -0.009 1.009 43 H -0.010 1.010 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.652 -1.054 -9.351 29.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.149 4.149 3 C -0.166 4.166 4 C 0.317 3.683 5 O -0.442 6.442 6 N -0.345 5.345 7 C -0.080 4.080 8 S -0.028 6.028 9 C -0.206 4.206 10 C 0.040 3.960 11 H 0.147 0.853 12 C 0.292 3.708 13 O -0.406 6.406 14 O -0.266 6.266 15 C 0.008 3.992 16 C -0.021 4.021 17 O -0.325 6.325 18 C 0.132 3.868 19 C -0.584 4.584 20 H 0.080 0.920 21 C -0.193 4.193 22 N -0.569 5.569 23 Si 0.806 3.194 24 H -0.187 1.187 25 H -0.198 1.198 26 H -0.197 1.197 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.135 0.865 33 H 0.149 0.851 34 H 0.130 0.870 35 H 0.177 0.823 36 H 0.167 0.833 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.075 0.925 42 H 0.009 0.991 43 H 0.008 0.992 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -27.587 -0.660 -9.810 29.287 hybrid contribution 1.255 -0.942 1.219 1.987 sum -26.332 -1.601 -8.591 27.744 Atomic orbital electron populations 1.21744 0.93125 1.02454 1.02989 1.21273 0.97129 0.94637 1.01845 1.21837 0.87010 1.00718 1.07024 1.21546 0.92133 0.81239 0.73428 1.90712 1.71524 1.32179 1.49791 1.48502 1.03310 1.07580 1.75065 1.24640 0.97585 0.80217 1.05572 1.88524 1.03073 1.43313 1.67913 1.24443 0.99988 0.89543 1.06624 1.20837 0.83026 0.97668 0.94503 0.85304 1.24338 0.80916 0.77350 0.88210 1.90627 1.57775 1.44527 1.47633 1.86560 1.24914 1.71249 1.43922 1.23156 0.93669 0.97746 0.84633 1.22596 0.92020 0.85911 1.01543 1.87850 1.24583 1.25601 1.94497 1.19888 0.76099 0.96959 0.93814 1.21391 0.92867 0.92577 1.51542 0.91968 1.25960 0.95547 1.03714 0.94083 1.70070 1.00947 1.35536 1.50344 0.85137 0.78447 0.77614 0.78226 1.18750 1.19773 1.19652 0.92502 0.91739 0.91006 0.92546 0.93744 0.86497 0.85119 0.86952 0.82252 0.83270 0.87892 0.90850 0.88335 0.90055 0.92545 0.99135 0.99236 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 71.98 0.71 -0.57 16 2 C -0.11 -1.62 5.22 30.59 0.16 -1.46 16 3 C -0.13 -1.48 4.49 29.85 0.13 -1.34 16 4 C 0.53 11.43 6.75 87.66 0.59 12.02 16 5 O -0.56 -17.85 14.68 15.38 0.23 -17.62 16 6 N -0.61 -11.61 2.76 -807.48 -2.23 -13.84 16 7 C 0.15 1.72 7.21 127.56 0.92 2.64 16 8 S -0.26 -4.15 23.43 -56.49 -1.32 -5.47 16 9 C -0.06 -1.13 6.91 72.51 0.50 -0.63 16 10 C 0.15 3.38 2.96 44.96 0.13 3.52 16 11 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 12 C 0.45 13.88 6.55 71.24 0.47 14.34 16 13 O -0.52 -18.17 14.36 28.20 0.40 -17.76 16 14 O -0.35 -11.78 10.03 -48.69 -0.49 -12.26 16 15 C 0.08 2.65 5.84 71.98 0.42 3.07 16 16 C 0.06 2.07 6.33 71.98 0.46 2.52 16 17 O -0.41 -19.64 10.30 -145.57 -1.50 -21.14 16 18 C 0.21 11.51 5.69 71.24 0.41 11.91 16 19 C -0.55 -32.21 9.43 25.60 0.24 -31.97 16 20 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 21 C 0.01 0.31 5.46 84.65 0.46 0.78 16 22 N -0.93 -55.37 13.29 21.45 0.28 -55.09 16 23 Si 0.98 43.93 29.54 68.60 2.03 45.95 16 24 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.06 0.97 8.10 -2.39 -0.02 0.95 16 31 H 0.04 0.88 8.10 -2.38 -0.02 0.86 16 32 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.13 0.62 7.63 -2.39 -0.02 0.60 16 34 H 0.11 1.08 8.14 -2.38 -0.02 1.07 16 35 H 0.16 0.61 7.14 -2.39 -0.02 0.59 16 36 H 0.15 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.10 2.27 7.84 -2.39 -0.02 2.25 16 38 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 39 H 0.10 2.81 8.13 -2.39 -0.02 2.79 16 40 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 41 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 42 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 43 H -0.01 -0.59 8.14 -2.39 -0.02 -0.60 16 44 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -78.41 383.23 3.99 -74.43 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 0.98 Total: 7.97 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 5.60 Total: 14.83 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: -1.94 Total: -68.92 kcal Atomic # 8 Polarization: -67.43 SS G_CDS: -1.36 Total: -68.79 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -4.15 SS G_CDS: -1.32 Total: -5.47 kcal Total: -78.41 3.99 -74.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815207500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.420 kcal (2) G-P(sol) polarization free energy of solvation -78.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds