Wall clock time and date at job start Tue Mar 31 2020 16:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36309 * 120.85034 * 2 1 4 4 C 1.40091 * 119.90179 * 179.97438 * 3 2 1 5 5 O 1.35561 * 119.22400 * 180.02562 * 4 3 2 6 6 N 1.31494 * 121.55452 * 0.02562 * 4 3 2 7 7 C 1.33831 * 121.29173 * 359.97438 * 6 4 3 8 8 C 1.40401 * 120.83092 * 180.02562 * 7 6 4 9 9 C 1.38515 * 119.53782 * 179.97438 * 8 7 6 10 10 C 1.47765 * 119.72238 * 180.02562 * 9 8 7 11 11 O 1.21471 * 119.99747 * 359.97438 * 10 9 8 12 12 O 1.34712 * 119.99872 * 180.02562 * 10 9 8 13 13 C 1.45199 * 116.99759 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47075 * 179.97438 * 13 12 10 15 15 O 1.42904 * 109.47396 * 64.99635 * 14 13 12 16 16 C 1.42896 * 114.00313 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.46851 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00616 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99887 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99815 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00265 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47378 * 89.99191 * 21 19 17 23 23 H 1.48498 * 109.47222 * 209.99557 * 21 19 17 24 24 H 1.48506 * 109.46855 * 329.99448 * 21 19 17 25 25 C 1.40577 * 120.55140 * 0.27828 * 9 8 7 26 26 C 1.35838 * 120.71561 * 359.38716 * 25 9 8 27 27 C 1.40503 * 120.01216 * 0.64987 * 26 25 9 28 28 H 1.08998 * 109.46880 * 90.00053 * 1 2 3 29 29 H 1.08992 * 109.47122 * 210.00161 * 1 2 3 30 30 H 1.08999 * 109.47205 * 330.00331 * 1 2 3 31 31 H 1.08002 * 120.04843 * 359.95643 * 3 2 1 32 32 H 0.96702 * 114.00382 * 269.98129 * 5 4 3 33 33 H 1.08003 * 120.22998 * 359.95668 * 8 7 6 34 34 H 1.09002 * 109.47177 * 299.99657 * 13 12 10 35 35 H 1.09001 * 109.47399 * 59.99828 * 13 12 10 36 36 H 1.09001 * 109.47630 * 184.99956 * 14 13 12 37 37 H 1.09004 * 109.47346 * 305.00086 * 14 13 12 38 38 H 1.08999 * 109.46799 * 300.00326 * 16 15 14 39 39 H 1.08998 * 109.47187 * 59.99969 * 16 15 14 40 40 H 0.97003 * 120.00101 * 180.02562 * 20 19 17 41 41 H 1.07995 * 119.63842 * 179.72170 * 25 9 8 42 42 H 1.07995 * 119.99483 * 180.25642 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1702 0.0000 4 6 3.6067 1.1470 0.0005 5 8 4.2880 2.3190 0.0011 6 7 4.2762 0.0153 0.0006 7 6 3.6458 -1.1653 0.0006 8 6 4.3703 -2.3679 0.0011 9 6 3.6904 -3.5747 0.0017 10 6 4.4488 -4.8428 0.0028 11 8 5.6634 -4.8241 0.0028 12 8 3.7933 -6.0197 0.0028 13 6 4.6028 -7.2251 0.0034 14 6 3.6896 -8.4527 0.0040 15 8 2.9484 -8.4956 -1.2171 16 6 2.0594 -9.6098 -1.3186 17 6 1.3343 -9.5552 -2.6385 18 1 1.5321 -8.7499 -3.3305 19 6 0.4174 -10.5327 -2.9624 20 7 0.1761 -11.5130 -2.1196 21 14 -0.4820 -10.4647 -4.5981 22 1 0.2973 -11.2051 -5.6227 23 1 -1.8230 -11.0856 -4.4519 24 1 -0.6353 -9.0492 -5.0202 25 6 2.2849 -3.6031 -0.0042 26 6 1.5676 -2.4495 0.0019 27 6 2.2297 -1.2103 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6807 2.1139 -0.0007 32 1 4.4863 2.6591 -0.8822 33 1 5.4502 -2.3521 0.0008 34 1 5.2322 -7.2405 -0.8864 35 1 5.2316 -7.2401 0.8936 36 1 4.2940 -9.3552 0.0940 37 1 2.9997 -8.3920 0.8457 38 1 2.6298 -10.5365 -1.2558 39 1 1.3359 -9.5727 -0.5043 40 1 -0.4686 -12.2010 -2.3475 41 1 1.7699 -4.5523 -0.0083 42 1 0.4883 -2.4849 0.0015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815246603.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:04 Heat of formation + Delta-G solvation = -121.129228 kcal Electronic energy + Delta-G solvation = -26531.712400 eV Core-core repulsion = 22442.336314 eV Total energy + Delta-G solvation = -4089.376086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.48856 -40.31399 -38.55386 -37.15527 -36.29690 -35.99542 -35.00245 -32.80027 -31.14878 -30.46326 -29.87880 -28.36428 -26.99065 -25.30051 -23.94796 -22.61594 -22.26590 -21.54171 -21.34374 -19.31032 -18.61655 -17.70067 -17.37708 -16.60198 -16.53706 -16.27627 -16.13295 -15.39572 -15.12975 -14.73473 -14.68291 -14.45445 -14.34975 -14.22705 -13.75591 -13.54947 -13.43226 -12.96862 -12.88680 -12.73933 -12.34236 -12.08941 -11.99130 -11.74512 -11.67637 -11.45765 -10.97765 -10.88005 -10.81268 -10.61536 -10.54225 -10.41894 -10.07840 -9.88624 -9.15934 -9.12068 -8.90700 -8.58380 -8.24348 -6.14621 -4.16322 -0.20192 0.20083 1.41298 2.00820 2.56718 2.78356 3.19762 3.28011 3.33148 3.38288 3.66737 4.00868 4.07450 4.29603 4.29805 4.48771 4.56115 4.69043 4.74678 4.76478 4.93706 5.00851 5.07754 5.18964 5.20349 5.22006 5.41541 5.43816 5.47302 5.55458 5.63975 5.83055 5.87305 5.94040 6.01395 6.02086 6.08459 6.32914 6.48036 7.02496 7.03073 7.36821 7.45668 7.72999 7.75730 8.09656 8.49239 8.96254 9.48487 10.96860 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013964 B = 0.002332 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.655584 B =12004.873348 C =13445.155569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.012 4.012 3 C -0.182 4.182 4 C 0.342 3.658 5 O -0.482 6.482 6 N -0.490 5.490 7 C 0.139 3.861 8 C -0.024 4.024 9 C -0.092 4.092 10 C 0.507 3.493 11 O -0.507 6.507 12 O -0.333 6.333 13 C 0.075 3.925 14 C 0.061 3.939 15 O -0.391 6.391 16 C 0.194 3.806 17 C -0.515 4.515 18 H 0.067 0.933 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.908 3.092 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.271 1.271 25 C -0.069 4.069 26 C -0.103 4.103 27 C -0.087 4.087 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.145 0.855 32 H 0.404 0.596 33 H 0.154 0.846 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.006 0.994 39 H 0.007 0.993 40 H 0.264 0.736 41 H 0.152 0.848 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.236 25.162 6.308 26.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.019 4.019 3 C -0.203 4.203 4 C 0.148 3.852 5 O -0.289 6.289 6 N -0.209 5.209 7 C 0.018 3.982 8 C -0.042 4.042 9 C -0.095 4.095 10 C 0.351 3.649 11 O -0.397 6.397 12 O -0.249 6.249 13 C 0.002 3.998 14 C -0.016 4.016 15 O -0.311 6.311 16 C 0.120 3.880 17 C -0.553 4.553 18 H 0.085 0.915 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.735 3.265 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.196 1.196 25 C -0.087 4.087 26 C -0.121 4.121 27 C -0.090 4.090 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.163 0.837 32 H 0.262 0.738 33 H 0.171 0.829 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.024 0.976 39 H 0.025 0.975 40 H 0.074 0.926 41 H 0.170 0.830 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.387 24.996 6.783 26.120 hybrid contribution -1.075 -0.259 -1.057 1.530 sum 2.312 24.737 5.726 25.496 Atomic orbital electron populations 1.20941 0.89146 1.04140 1.03699 1.20139 0.97086 0.91351 0.93342 1.21771 0.93813 0.99729 1.05009 1.19262 0.87077 0.84994 0.93877 1.84745 1.77038 1.32966 1.34192 1.67442 1.41068 0.97621 1.14805 1.18216 0.89389 0.90790 0.99769 1.21200 1.01269 0.88387 0.93387 1.19137 0.93868 0.90495 1.05957 1.21016 0.86058 0.84756 0.73076 1.90831 1.14670 1.88301 1.45892 1.86627 1.40989 1.14262 1.83000 1.23284 0.93177 0.80573 1.02810 1.22331 0.94777 0.93988 0.90534 1.87919 1.57617 1.50713 1.34821 1.20238 0.87201 0.83004 0.97536 1.21042 1.22081 1.10193 1.01980 0.91515 1.24952 0.96715 0.95015 0.97835 1.69958 1.34952 1.12958 1.35884 0.86330 0.78733 0.78429 0.82971 1.20458 1.21063 1.19600 1.21274 0.92301 1.00177 0.94934 1.20968 1.00681 0.90371 1.00088 1.18898 0.93691 0.94623 1.01749 0.89622 0.90051 0.90376 0.83732 0.73796 0.82884 0.90245 0.90186 0.91792 0.93105 0.97608 0.97470 0.92619 0.83022 0.83953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 9.58 36.00 0.34 -0.24 16 2 C -0.01 -0.09 5.92 -104.29 -0.62 -0.71 16 3 C -0.18 -1.39 9.64 -39.58 -0.38 -1.77 16 4 C 0.34 3.35 7.72 -17.00 -0.13 3.22 16 5 O -0.48 -3.80 13.54 -18.38 -0.25 -4.05 16 6 N -0.49 -6.03 10.36 -11.06 -0.11 -6.15 16 7 C 0.14 1.69 6.60 -84.87 -0.56 1.13 16 8 C -0.02 -0.30 9.56 -38.67 -0.37 -0.67 16 9 C -0.09 -1.20 5.87 -105.02 -0.62 -1.82 16 10 C 0.51 7.79 7.89 34.63 0.27 8.06 16 11 O -0.51 -8.63 16.09 -19.24 -0.31 -8.94 16 12 O -0.33 -5.44 9.40 -43.30 -0.41 -5.84 16 13 C 0.07 1.16 5.85 37.16 0.22 1.38 16 14 C 0.06 1.09 6.33 37.16 0.24 1.32 16 15 O -0.39 -9.24 10.30 -38.80 -0.40 -9.64 16 16 C 0.19 5.21 5.69 36.00 0.20 5.42 16 17 C -0.51 -14.95 9.43 -34.44 -0.32 -15.27 16 18 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 21 Si 0.91 21.53 29.54 -169.99 -5.02 16.51 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 C -0.07 -0.79 9.52 -39.56 -0.38 -1.16 16 26 C -0.10 -0.98 9.28 -39.59 -0.37 -1.34 16 27 C -0.09 -0.90 5.75 -106.70 -0.61 -1.51 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.35 6.49 -51.93 -0.34 0.02 16 30 H 0.08 0.26 8.10 -51.93 -0.42 -0.16 16 31 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.40 1.10 9.06 45.56 0.41 1.51 16 33 H 0.15 1.95 7.61 -52.48 -0.40 1.55 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.15 1.73 7.57 -52.49 -0.40 1.33 16 42 H 0.14 0.96 6.39 -52.49 -0.34 0.63 16 LS Contribution 370.28 15.07 5.58 5.58 Total: -1.00 -35.61 370.28 -7.77 -43.38 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -4.40 Total: -2.66 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -3.18 Total: -2.46 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 0.62 Total: -31.87 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -1.37 Total: -28.47 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.61 -7.77 -43.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815246603.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.751 kcal (2) G-P(sol) polarization free energy of solvation -35.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds