Wall clock time and date at job start Tue Mar 31 2020 16:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36309 * 120.85034 * 2 1 4 4 C 1.40091 * 119.90179 * 179.97438 * 3 2 1 5 5 O 1.35561 * 119.22400 * 180.02562 * 4 3 2 6 6 N 1.31494 * 121.55452 * 0.02562 * 4 3 2 7 7 C 1.33831 * 121.29173 * 359.97438 * 6 4 3 8 8 C 1.40401 * 120.83092 * 180.02562 * 7 6 4 9 9 C 1.38515 * 119.53782 * 179.97438 * 8 7 6 10 10 C 1.47765 * 119.72238 * 180.02562 * 9 8 7 11 11 O 1.21471 * 119.99747 * 359.97438 * 10 9 8 12 12 O 1.34712 * 119.99872 * 180.02562 * 10 9 8 13 13 C 1.45199 * 116.99759 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47075 * 179.97438 * 13 12 10 15 15 O 1.42904 * 109.47396 * 64.99635 * 14 13 12 16 16 C 1.42896 * 114.00313 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.46851 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00616 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99887 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99815 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00265 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47378 * 89.99191 * 21 19 17 23 23 H 1.48498 * 109.47222 * 209.99557 * 21 19 17 24 24 H 1.48506 * 109.46855 * 329.99448 * 21 19 17 25 25 C 1.40577 * 120.55140 * 0.27828 * 9 8 7 26 26 C 1.35838 * 120.71561 * 359.38716 * 25 9 8 27 27 C 1.40503 * 120.01216 * 0.64987 * 26 25 9 28 28 H 1.08998 * 109.46880 * 90.00053 * 1 2 3 29 29 H 1.08992 * 109.47122 * 210.00161 * 1 2 3 30 30 H 1.08999 * 109.47205 * 330.00331 * 1 2 3 31 31 H 1.08002 * 120.04843 * 359.95643 * 3 2 1 32 32 H 0.96702 * 114.00382 * 269.98129 * 5 4 3 33 33 H 1.08003 * 120.22998 * 359.95668 * 8 7 6 34 34 H 1.09002 * 109.47177 * 299.99657 * 13 12 10 35 35 H 1.09001 * 109.47399 * 59.99828 * 13 12 10 36 36 H 1.09001 * 109.47630 * 184.99956 * 14 13 12 37 37 H 1.09004 * 109.47346 * 305.00086 * 14 13 12 38 38 H 1.08999 * 109.46799 * 300.00326 * 16 15 14 39 39 H 1.08998 * 109.47187 * 59.99969 * 16 15 14 40 40 H 0.97003 * 120.00101 * 180.02562 * 20 19 17 41 41 H 1.07995 * 119.63842 * 179.72170 * 25 9 8 42 42 H 1.07995 * 119.99483 * 180.25642 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1702 0.0000 4 6 3.6067 1.1470 0.0005 5 8 4.2880 2.3190 0.0011 6 7 4.2762 0.0153 0.0006 7 6 3.6458 -1.1653 0.0006 8 6 4.3703 -2.3679 0.0011 9 6 3.6904 -3.5747 0.0017 10 6 4.4488 -4.8428 0.0028 11 8 5.6634 -4.8241 0.0028 12 8 3.7933 -6.0197 0.0028 13 6 4.6028 -7.2251 0.0034 14 6 3.6896 -8.4527 0.0040 15 8 2.9484 -8.4956 -1.2171 16 6 2.0594 -9.6098 -1.3186 17 6 1.3343 -9.5552 -2.6385 18 1 1.5321 -8.7499 -3.3305 19 6 0.4174 -10.5327 -2.9624 20 7 0.1761 -11.5130 -2.1196 21 14 -0.4820 -10.4647 -4.5981 22 1 0.2973 -11.2051 -5.6227 23 1 -1.8230 -11.0856 -4.4519 24 1 -0.6353 -9.0492 -5.0202 25 6 2.2849 -3.6031 -0.0042 26 6 1.5676 -2.4495 0.0019 27 6 2.2297 -1.2103 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6807 2.1139 -0.0007 32 1 4.4863 2.6591 -0.8822 33 1 5.4502 -2.3521 0.0008 34 1 5.2322 -7.2405 -0.8864 35 1 5.2316 -7.2401 0.8936 36 1 4.2940 -9.3552 0.0940 37 1 2.9997 -8.3920 0.8457 38 1 2.6298 -10.5365 -1.2558 39 1 1.3359 -9.5727 -0.5043 40 1 -0.4686 -12.2010 -2.3475 41 1 1.7699 -4.5523 -0.0083 42 1 0.4883 -2.4849 0.0015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815246603.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:02 Heat of formation + Delta-G solvation = -146.904232 kcal Electronic energy + Delta-G solvation = -26532.830088 eV Core-core repulsion = 22442.336314 eV Total energy + Delta-G solvation = -4090.493774 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.29453 -41.46820 -39.33345 -38.72819 -37.55104 -36.97050 -35.69527 -34.93620 -32.18043 -31.47459 -30.99260 -29.05833 -28.85118 -26.28134 -24.73633 -24.54172 -23.68644 -22.49125 -22.28377 -20.10920 -19.49844 -18.71363 -18.44910 -18.37973 -17.95085 -17.36562 -17.07282 -16.96503 -16.39200 -16.24612 -15.92466 -15.48822 -15.32464 -15.08877 -14.88882 -14.49327 -14.34381 -14.09714 -13.86974 -13.74061 -13.40068 -13.28822 -13.13465 -12.92071 -12.70404 -12.66891 -12.56889 -12.46534 -12.39332 -12.03635 -11.79736 -11.74611 -11.29133 -11.27065 -10.88931 -10.61893 -10.26221 -9.91456 -9.38210 -8.31292 -6.43170 -1.03113 -0.57760 0.60223 1.10045 1.41510 1.42504 1.43829 1.55965 1.86129 2.35307 2.49624 2.84788 3.02721 3.05795 3.29334 3.35534 3.49407 3.64518 3.82700 3.89534 3.91446 4.07734 4.10144 4.31274 4.38964 4.39583 4.48299 4.54708 4.61844 4.71573 4.78677 4.83858 4.87001 4.96952 5.08090 5.10650 5.18369 5.23004 5.31126 5.40031 5.55402 5.57076 5.96257 6.48707 6.51962 6.54022 6.76824 6.80584 7.28271 8.80753 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013964 B = 0.002332 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.655584 B =12004.873348 C =13445.155569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.005 4.005 3 C -0.177 4.177 4 C 0.344 3.656 5 O -0.490 6.490 6 N -0.532 5.532 7 C 0.123 3.877 8 C -0.034 4.034 9 C -0.103 4.103 10 C 0.508 3.492 11 O -0.531 6.531 12 O -0.345 6.345 13 C 0.077 3.923 14 C 0.055 3.945 15 O -0.409 6.409 16 C 0.208 3.792 17 C -0.548 4.548 18 H 0.060 0.940 19 C 0.007 3.993 20 N -0.929 5.929 21 Si 0.981 3.019 22 H -0.270 1.270 23 H -0.273 1.273 24 H -0.264 1.264 25 C -0.086 4.086 26 C -0.083 4.083 27 C -0.098 4.098 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.179 0.821 32 H 0.425 0.575 33 H 0.141 0.859 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.060 0.940 38 H -0.009 1.009 39 H -0.008 1.008 40 H 0.271 0.729 41 H 0.149 0.851 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.035 27.174 5.757 27.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.013 4.013 3 C -0.198 4.198 4 C 0.150 3.850 5 O -0.300 6.300 6 N -0.253 5.253 7 C 0.003 3.997 8 C -0.053 4.053 9 C -0.106 4.106 10 C 0.354 3.646 11 O -0.422 6.422 12 O -0.261 6.261 13 C 0.004 3.996 14 C -0.022 4.022 15 O -0.329 6.329 16 C 0.133 3.867 17 C -0.586 4.586 18 H 0.078 0.922 19 C -0.191 4.191 20 N -0.568 5.568 21 Si 0.804 3.196 22 H -0.195 1.195 23 H -0.198 1.198 24 H -0.188 1.188 25 C -0.104 4.104 26 C -0.101 4.101 27 C -0.100 4.100 28 H 0.117 0.883 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.197 0.803 32 H 0.287 0.713 33 H 0.158 0.842 34 H 0.092 0.908 35 H 0.129 0.871 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.009 0.991 39 H 0.010 0.990 40 H 0.080 0.920 41 H 0.167 0.833 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.202 27.029 6.233 27.764 hybrid contribution -0.344 -0.700 -0.815 1.128 sum 0.858 26.329 5.419 26.894 Atomic orbital electron populations 1.21078 0.86366 1.05542 1.04908 1.20536 0.98850 0.90244 0.91636 1.22092 0.92775 1.01181 1.03721 1.19645 0.88211 0.84764 0.92362 1.84694 1.77073 1.32079 1.36199 1.67389 1.42373 0.98404 1.17129 1.18288 0.90469 0.90502 1.00431 1.21127 1.00815 0.88972 0.94429 1.19061 0.94616 0.89311 1.07605 1.21416 0.85966 0.85040 0.72164 1.90804 1.15639 1.88532 1.47257 1.86618 1.41495 1.14758 1.83179 1.23293 0.92612 0.79669 1.04038 1.22642 0.95009 0.96025 0.88537 1.87866 1.57672 1.49431 1.37905 1.19873 0.87072 0.83380 0.96371 1.21370 1.23496 1.10749 1.02987 0.92209 1.25930 0.97137 0.94187 1.01878 1.70057 1.35386 1.13486 1.37862 0.85209 0.77625 0.78867 0.77880 1.19515 1.19817 1.18837 1.21275 0.91508 1.00968 0.96611 1.21294 1.02074 0.89270 0.97463 1.19144 0.93054 0.96060 1.01760 0.88266 0.89369 0.88348 0.80327 0.71261 0.84160 0.90845 0.87122 0.89862 0.92201 0.99105 0.99038 0.92020 0.83311 0.80662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 9.58 71.24 0.68 0.03 16 2 C -0.01 -0.07 5.92 -19.65 -0.12 -0.18 16 3 C -0.18 -2.17 9.64 22.27 0.21 -1.95 16 4 C 0.34 6.26 7.72 85.19 0.66 6.92 16 5 O -0.49 -6.93 13.54 -88.68 -1.20 -8.13 16 6 N -0.53 -13.21 10.36 -302.21 -3.13 -16.34 16 7 C 0.12 3.05 6.60 40.21 0.27 3.32 16 8 C -0.03 -0.93 9.56 22.86 0.22 -0.72 16 9 C -0.10 -2.84 5.87 -20.12 -0.12 -2.96 16 10 C 0.51 16.34 7.89 70.34 0.56 16.90 16 11 O -0.53 -18.91 16.09 19.93 0.32 -18.59 16 12 O -0.34 -11.55 9.40 -53.55 -0.50 -12.05 16 13 C 0.08 2.41 5.85 71.98 0.42 2.83 16 14 C 0.05 1.94 6.33 71.98 0.46 2.40 16 15 O -0.41 -19.75 10.30 -145.57 -1.50 -21.25 16 16 C 0.21 11.46 5.69 71.24 0.41 11.86 16 17 C -0.55 -32.34 9.43 25.60 0.24 -32.10 16 18 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 19 C 0.01 0.42 5.46 84.66 0.46 0.88 16 20 N -0.93 -54.89 13.29 21.45 0.28 -54.60 16 21 Si 0.98 43.72 29.54 68.60 2.03 45.75 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 24 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 25 C -0.09 -1.97 9.52 22.28 0.21 -1.76 16 26 C -0.08 -1.46 9.28 22.26 0.21 -1.25 16 27 C -0.10 -1.88 5.75 -21.21 -0.12 -2.00 16 28 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.09 0.39 6.49 -2.39 -0.02 0.37 16 30 H 0.10 0.18 8.10 -2.39 -0.02 0.16 16 31 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 32 H 0.43 1.58 9.06 -74.06 -0.67 0.91 16 33 H 0.14 3.99 7.61 -2.91 -0.02 3.96 16 34 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 36 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 37 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 38 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 39 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 40 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 41 H 0.15 3.45 7.57 -2.91 -0.02 3.43 16 42 H 0.18 1.82 6.39 -2.91 -0.02 1.80 16 Total: -1.00 -78.64 370.28 1.34 -77.30 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: 0.40 Total: 5.71 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 4.64 Total: 2.22 kcal Atomic # 7 Polarization: -68.10 SS G_CDS: -2.85 Total: -70.95 kcal Atomic # 8 Polarization: -57.15 SS G_CDS: -2.88 Total: -60.03 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -78.64 1.34 -77.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815246603.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.606 kcal (2) G-P(sol) polarization free energy of solvation -78.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds