Wall clock time and date at job start Tue Mar 31 2020 17:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47327 * 2 1 4 4 N 1.46500 * 109.47164 * 119.99842 * 2 1 3 5 5 C 1.34779 * 120.00208 * 275.00527 * 4 2 1 6 6 O 1.21282 * 119.99923 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00292 * 180.02562 * 5 4 2 8 8 C 1.50694 * 109.47129 * 179.97438 * 7 5 4 9 9 C 1.37640 * 120.12551 * 264.99998 * 8 7 5 10 10 C 1.38616 * 120.24968 * 179.70551 * 9 8 7 11 11 C 1.38657 * 120.50100 * 0.02562 * 10 9 8 12 12 C 1.37601 * 120.24762 * 0.02940 * 11 10 9 13 13 C 1.40699 * 120.13046 * 84.71818 * 8 7 5 14 14 C 1.41390 * 120.24182 * 0.26047 * 13 8 7 15 15 H 1.07996 * 119.99997 * 333.02991 * 14 13 8 16 16 C 1.39951 * 119.99901 * 153.03438 * 14 13 8 17 17 N 1.30816 * 119.99946 * 348.58025 * 16 14 13 18 18 Si 1.86806 * 119.99851 * 168.58006 * 16 14 13 19 19 H 1.48498 * 109.46930 * 59.99506 * 18 16 14 20 20 H 1.48497 * 109.47143 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46892 * 300.00187 * 18 16 14 22 22 C 1.52999 * 109.47294 * 239.99685 * 2 1 3 23 23 H 1.08999 * 109.47085 * 296.46338 * 22 2 1 24 24 O 1.42904 * 109.47125 * 56.46490 * 22 2 1 25 25 C 1.53005 * 109.46870 * 176.46293 * 22 2 1 26 26 F 1.39893 * 109.47319 * 66.35312 * 25 22 2 27 27 F 1.39903 * 109.46509 * 186.35262 * 25 22 2 28 28 F 1.39895 * 109.47077 * 306.35221 * 25 22 2 29 29 H 1.09002 * 109.46956 * 183.28168 * 1 2 3 30 30 H 1.08995 * 109.47280 * 303.28413 * 1 2 3 31 31 H 1.09000 * 109.47063 * 63.28757 * 1 2 3 32 32 H 0.97002 * 120.00167 * 94.99768 * 4 2 1 33 33 H 1.08991 * 109.47146 * 59.99592 * 7 5 4 34 34 H 1.09003 * 109.46922 * 299.99620 * 7 5 4 35 35 H 1.07998 * 119.87963 * 359.72053 * 9 8 7 36 36 H 1.08002 * 119.75435 * 179.97438 * 10 9 8 37 37 H 1.08004 * 119.87734 * 180.02562 * 11 10 9 38 38 H 1.08002 * 120.12847 * 179.97438 * 12 11 10 39 39 H 0.97007 * 119.99501 * 180.02562 * 17 16 14 40 40 H 0.96698 * 113.99924 * 59.99516 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8589 1.1586 2.4116 7 6 2.6499 -0.7285 3.5875 8 6 2.7009 0.2400 4.7410 9 6 3.8736 0.8950 5.0416 10 6 3.9218 1.7909 6.0983 11 6 2.7925 2.0375 6.8640 12 6 1.6097 1.3933 6.5822 13 6 1.5486 0.4826 5.5110 14 6 0.3384 -0.1841 5.2112 15 1 0.1417 -0.5190 4.2034 16 6 -0.6046 -0.4100 6.2203 17 7 -0.2829 -0.2113 7.4726 18 14 -2.3228 -0.9953 5.7788 19 1 -2.2354 -2.2979 5.0712 20 1 -3.1242 -1.1575 7.0185 21 1 -2.9748 0.0049 4.8958 22 6 2.0401 -0.7213 -1.2492 23 1 1.7294 -1.7656 -1.2180 24 8 1.4971 -0.0974 -2.4146 25 6 3.5675 -0.6446 -1.2944 26 9 4.1030 -1.3792 -0.2311 27 9 4.0253 -1.1754 -2.5052 28 9 3.9707 0.6907 -1.1884 29 1 -0.3633 -1.0260 0.0588 30 1 -0.3633 0.5639 0.8590 31 1 -0.3633 0.4619 -0.9180 32 1 2.2490 -1.6318 1.1527 33 1 3.6491 -1.1202 3.3980 34 1 1.9777 -1.5508 3.8326 35 1 4.7594 0.7105 4.4520 36 1 4.8463 2.3002 6.3274 37 1 2.8413 2.7379 7.6847 38 1 0.7313 1.5865 7.1802 39 1 -0.9365 -0.3683 8.1720 40 1 1.7333 0.8357 -2.5073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819566155.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:56 Heat of formation + Delta-G solvation = -228.064563 kcal Electronic energy + Delta-G solvation = -29314.949646 eV Core-core repulsion = 24679.079756 eV Total energy + Delta-G solvation = -4635.869890 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.36592 -47.87268 -47.84559 -39.69153 -38.22276 -37.22948 -34.82709 -33.59933 -31.93371 -30.58706 -29.40698 -29.00276 -26.73117 -25.01905 -24.05669 -22.06700 -20.90831 -20.59434 -19.46222 -18.90903 -18.78808 -18.54651 -17.26983 -16.97824 -16.50906 -15.56407 -15.44013 -14.84118 -14.69050 -14.64143 -14.52733 -14.33820 -14.24421 -13.98772 -13.97604 -13.80081 -13.62780 -13.47931 -13.12799 -12.72647 -12.55408 -12.37674 -12.07039 -11.70063 -11.54045 -11.48138 -11.14210 -11.00811 -10.97928 -10.77774 -10.66485 -10.38100 -9.49286 -9.36401 -9.24197 -9.18218 -8.93522 -7.29166 -7.25880 -6.68089 -4.34647 2.33761 2.77931 2.93021 3.06061 3.08597 3.17101 3.25384 3.28142 3.38340 3.46507 3.74181 3.93961 4.05463 4.32142 4.62103 4.69549 5.08551 5.17848 5.44530 5.66495 5.78214 5.85045 6.01914 6.13850 6.20283 6.30432 6.42812 6.53185 6.57687 6.75276 6.80946 7.10252 7.32607 7.45151 7.64581 7.77290 7.94684 8.09093 8.15221 8.33367 8.66641 8.76507 8.93536 9.03335 10.24335 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.003943 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.998382 B = 7098.709753 C = 8467.080582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.111 3.889 3 H 0.101 0.899 4 N -0.743 5.743 5 C 0.521 3.479 6 O -0.515 6.515 7 C -0.070 4.070 8 C -0.180 4.180 9 C -0.083 4.083 10 C -0.237 4.237 11 C -0.109 4.109 12 C -0.157 4.157 13 C 0.128 3.872 14 C -0.455 4.455 15 H 0.073 0.927 16 C 0.075 3.925 17 N -0.800 5.800 18 Si 0.906 3.094 19 H -0.267 1.267 20 H -0.279 1.279 21 H -0.265 1.265 22 C 0.068 3.932 23 H 0.145 0.855 24 O -0.523 6.523 25 C 0.419 3.581 26 F -0.173 7.173 27 F -0.179 7.179 28 F -0.180 7.180 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.399 0.601 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.122 0.878 39 H 0.279 0.721 40 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.624 -4.046 -15.749 16.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.005 3.995 3 H 0.119 0.881 4 N -0.401 5.401 5 C 0.309 3.691 6 O -0.387 6.387 7 C -0.110 4.110 8 C -0.182 4.182 9 C -0.101 4.101 10 C -0.256 4.256 11 C -0.127 4.127 12 C -0.176 4.176 13 C 0.125 3.875 14 C -0.485 4.485 15 H 0.091 0.909 16 C -0.142 4.142 17 N -0.426 5.426 18 Si 0.730 3.270 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.190 1.190 22 C 0.005 3.995 23 H 0.162 0.838 24 O -0.327 6.327 25 C 0.365 3.635 26 F -0.154 7.154 27 F -0.160 7.160 28 F -0.161 7.161 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.233 0.767 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.139 0.861 39 H 0.090 0.910 40 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 2.094 -3.760 -15.560 16.144 hybrid contribution -0.089 -0.205 -0.055 0.230 sum 2.005 -3.965 -15.615 16.235 Atomic orbital electron populations 1.22090 0.92916 1.03060 1.03448 1.21496 0.96590 0.98242 0.83163 0.88078 1.46220 1.70357 1.14095 1.09388 1.21283 0.76474 0.87653 0.83703 1.90689 1.47689 1.16129 1.84224 1.20261 1.01062 0.98929 0.90707 1.19067 0.94241 1.04164 1.00764 1.20306 0.95903 0.97019 0.96878 1.20324 0.97637 1.06176 1.01479 1.20705 0.94164 0.99486 0.98385 1.21404 0.97062 0.98138 1.00979 1.17342 0.91066 0.88977 0.90097 1.19430 1.00424 1.32949 0.95717 0.90931 1.25872 1.00073 0.93738 0.94509 1.69788 1.35401 1.37181 1.00265 0.86414 0.81850 0.79884 0.78811 1.19129 1.20357 1.18990 1.23488 0.85129 1.02357 0.88505 0.83761 1.86710 1.74581 1.30153 1.41288 1.21618 0.93871 0.74148 0.73907 1.93197 1.88242 1.77233 1.56765 1.93209 1.90940 1.86291 1.45600 1.93205 1.92464 1.34712 1.95740 0.92030 0.90608 0.91053 0.76654 0.90448 0.88426 0.89775 0.89690 0.89594 0.86069 0.90991 0.76132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.36 37.16 0.35 -1.42 16 2 C 0.11 1.26 2.20 -67.93 -0.15 1.11 16 3 H 0.10 1.32 6.98 -51.93 -0.36 0.95 16 4 N -0.74 -9.80 4.01 -53.80 -0.22 -10.02 16 5 C 0.52 9.58 7.41 -10.98 -0.08 9.50 16 6 O -0.51 -11.69 15.70 5.56 0.09 -11.60 16 7 C -0.07 -1.33 5.18 -29.04 -0.15 -1.48 16 8 C -0.18 -4.29 4.43 -103.91 -0.46 -4.75 16 9 C -0.08 -1.91 9.66 -39.66 -0.38 -2.29 16 10 C -0.24 -5.53 10.05 -39.29 -0.39 -5.92 16 11 C -0.11 -2.66 10.02 -39.66 -0.40 -3.06 16 12 C -0.16 -4.17 8.68 -38.87 -0.34 -4.51 16 13 C 0.13 3.37 5.57 -106.83 -0.60 2.78 16 14 C -0.46 -11.76 8.14 -37.74 -0.31 -12.07 16 15 H 0.07 1.80 6.68 -52.49 -0.35 1.45 16 16 C 0.07 1.85 5.26 -17.34 -0.09 1.76 16 17 N -0.80 -20.52 10.75 55.55 0.60 -19.92 16 18 Si 0.91 18.60 29.57 -169.99 -5.03 13.58 16 19 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 20 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 22 C 0.07 0.58 2.70 -26.73 -0.07 0.51 16 23 H 0.14 0.99 8.14 -51.93 -0.42 0.56 16 24 O -0.52 -4.10 12.31 -35.23 -0.43 -4.54 16 25 C 0.42 4.26 2.85 37.16 0.11 4.36 16 26 F -0.17 -1.91 15.35 2.25 0.03 -1.87 16 27 F -0.18 -1.88 17.16 2.25 0.04 -1.84 16 28 F -0.18 -2.08 16.31 2.25 0.04 -2.04 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.07 0.67 7.49 -51.93 -0.39 0.29 16 32 H 0.40 4.15 7.74 -40.82 -0.32 3.84 16 33 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 34 H 0.10 1.81 7.09 -51.93 -0.37 1.45 16 35 H 0.08 1.72 8.06 -52.49 -0.42 1.29 16 36 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 38 H 0.12 3.33 6.10 -52.49 -0.32 3.00 16 39 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 40 H 0.39 1.98 8.88 45.56 0.40 2.39 16 LS Contribution 349.87 15.07 5.27 5.27 Total: -1.00 -31.33 349.87 -6.37 -37.70 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -3.79 Total: 10.77 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -2.97 Total: -15.49 kcal Atomic # 7 Polarization: -30.32 SS G_CDS: 0.38 Total: -29.94 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.35 Total: -16.14 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 0.11 Total: -5.76 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.33 -6.37 -37.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819566155.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.364 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds