Wall clock time and date at job start Tue Mar 31 2020 17:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47327 * 2 1 4 4 N 1.46500 * 109.47164 * 119.99842 * 2 1 3 5 5 C 1.34779 * 120.00208 * 275.00527 * 4 2 1 6 6 O 1.21282 * 119.99923 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00292 * 180.02562 * 5 4 2 8 8 C 1.50694 * 109.47129 * 179.97438 * 7 5 4 9 9 C 1.37640 * 120.12551 * 264.99998 * 8 7 5 10 10 C 1.38616 * 120.24968 * 179.70551 * 9 8 7 11 11 C 1.38657 * 120.50100 * 0.02562 * 10 9 8 12 12 C 1.37601 * 120.24762 * 0.02940 * 11 10 9 13 13 C 1.40699 * 120.13046 * 84.71818 * 8 7 5 14 14 C 1.41390 * 120.24182 * 0.26047 * 13 8 7 15 15 H 1.07996 * 119.99997 * 333.02991 * 14 13 8 16 16 C 1.39951 * 119.99901 * 153.03438 * 14 13 8 17 17 N 1.30816 * 119.99946 * 348.58025 * 16 14 13 18 18 Si 1.86806 * 119.99851 * 168.58006 * 16 14 13 19 19 H 1.48498 * 109.46930 * 59.99506 * 18 16 14 20 20 H 1.48497 * 109.47143 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46892 * 300.00187 * 18 16 14 22 22 C 1.52999 * 109.47294 * 239.99685 * 2 1 3 23 23 H 1.08999 * 109.47085 * 296.46338 * 22 2 1 24 24 O 1.42904 * 109.47125 * 56.46490 * 22 2 1 25 25 C 1.53005 * 109.46870 * 176.46293 * 22 2 1 26 26 F 1.39893 * 109.47319 * 66.35312 * 25 22 2 27 27 F 1.39903 * 109.46509 * 186.35262 * 25 22 2 28 28 F 1.39895 * 109.47077 * 306.35221 * 25 22 2 29 29 H 1.09002 * 109.46956 * 183.28168 * 1 2 3 30 30 H 1.08995 * 109.47280 * 303.28413 * 1 2 3 31 31 H 1.09000 * 109.47063 * 63.28757 * 1 2 3 32 32 H 0.97002 * 120.00167 * 94.99768 * 4 2 1 33 33 H 1.08991 * 109.47146 * 59.99592 * 7 5 4 34 34 H 1.09003 * 109.46922 * 299.99620 * 7 5 4 35 35 H 1.07998 * 119.87963 * 359.72053 * 9 8 7 36 36 H 1.08002 * 119.75435 * 179.97438 * 10 9 8 37 37 H 1.08004 * 119.87734 * 180.02562 * 11 10 9 38 38 H 1.08002 * 120.12847 * 179.97438 * 12 11 10 39 39 H 0.97007 * 119.99501 * 180.02562 * 17 16 14 40 40 H 0.96698 * 113.99924 * 59.99516 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8589 1.1586 2.4116 7 6 2.6499 -0.7285 3.5875 8 6 2.7009 0.2400 4.7410 9 6 3.8736 0.8950 5.0416 10 6 3.9218 1.7909 6.0983 11 6 2.7925 2.0375 6.8640 12 6 1.6097 1.3933 6.5822 13 6 1.5486 0.4826 5.5110 14 6 0.3384 -0.1841 5.2112 15 1 0.1417 -0.5190 4.2034 16 6 -0.6046 -0.4100 6.2203 17 7 -0.2829 -0.2113 7.4726 18 14 -2.3228 -0.9953 5.7788 19 1 -2.2354 -2.2979 5.0712 20 1 -3.1242 -1.1575 7.0185 21 1 -2.9748 0.0049 4.8958 22 6 2.0401 -0.7213 -1.2492 23 1 1.7294 -1.7656 -1.2180 24 8 1.4971 -0.0974 -2.4146 25 6 3.5675 -0.6446 -1.2944 26 9 4.1030 -1.3792 -0.2311 27 9 4.0253 -1.1754 -2.5052 28 9 3.9707 0.6907 -1.1884 29 1 -0.3633 -1.0260 0.0588 30 1 -0.3633 0.5639 0.8590 31 1 -0.3633 0.4619 -0.9180 32 1 2.2490 -1.6318 1.1527 33 1 3.6491 -1.1202 3.3980 34 1 1.9777 -1.5508 3.8326 35 1 4.7594 0.7105 4.4520 36 1 4.8463 2.3002 6.3274 37 1 2.8413 2.7379 7.6847 38 1 0.7313 1.5865 7.1802 39 1 -0.9365 -0.3683 8.1720 40 1 1.7333 0.8357 -2.5073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819566155.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:55 Heat of formation + Delta-G solvation = -248.930377 kcal Electronic energy + Delta-G solvation = -29315.854455 eV Core-core repulsion = 24679.079756 eV Total energy + Delta-G solvation = -4636.774700 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -51.19076 -48.71886 -48.66419 -41.00174 -39.45648 -38.67456 -35.93371 -35.46880 -33.55182 -31.80980 -31.27309 -29.82735 -28.38246 -26.84958 -24.95753 -23.09306 -22.77985 -21.97653 -21.04654 -19.71423 -19.60741 -19.39261 -19.04185 -18.20818 -17.65248 -17.22296 -16.52601 -16.23471 -16.19016 -15.62858 -15.51974 -15.43677 -15.15889 -15.10444 -15.07783 -14.86307 -14.80044 -14.76934 -14.38999 -14.32661 -13.86957 -13.55845 -13.33283 -13.17770 -12.95980 -12.84075 -12.74702 -12.65009 -12.47133 -12.24314 -12.09317 -11.57426 -11.32578 -11.19105 -11.03137 -10.77406 -10.13916 -9.19024 -9.14406 -8.52955 -6.28544 1.00936 1.15294 1.37964 1.48409 1.55645 1.56020 1.82263 2.10002 2.22085 2.58794 2.65688 2.82233 2.89357 3.33118 3.51908 3.77660 3.85366 4.13722 4.16989 4.34755 4.41956 4.48975 4.63231 4.72040 4.75912 4.82452 4.92291 5.08588 5.21989 5.26492 5.40435 5.46638 5.57401 5.79716 6.05691 6.19144 6.23322 6.23945 6.43949 6.58594 6.76843 7.02016 7.13605 7.41015 8.41505 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.003943 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.998382 B = 7098.709753 C = 8467.080582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.110 3.890 3 H 0.083 0.917 4 N -0.723 5.723 5 C 0.524 3.476 6 O -0.566 6.566 7 C -0.071 4.071 8 C -0.186 4.186 9 C -0.094 4.094 10 C -0.241 4.241 11 C -0.120 4.120 12 C -0.191 4.191 13 C 0.095 3.905 14 C -0.479 4.479 15 H 0.074 0.926 16 C 0.033 3.967 17 N -0.832 5.832 18 Si 0.974 3.026 19 H -0.251 1.251 20 H -0.271 1.271 21 H -0.270 1.270 22 C 0.087 3.913 23 H 0.171 0.829 24 O -0.522 6.522 25 C 0.417 3.583 26 F -0.178 7.178 27 F -0.179 7.179 28 F -0.191 7.191 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.092 0.908 32 H 0.415 0.585 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.284 0.716 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.768 -5.610 -17.845 18.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.005 3.995 3 H 0.101 0.899 4 N -0.380 5.380 5 C 0.313 3.687 6 O -0.443 6.443 7 C -0.110 4.110 8 C -0.187 4.187 9 C -0.112 4.112 10 C -0.260 4.260 11 C -0.138 4.138 12 C -0.211 4.211 13 C 0.093 3.907 14 C -0.509 4.509 15 H 0.092 0.908 16 C -0.181 4.181 17 N -0.459 5.459 18 Si 0.795 3.205 19 H -0.175 1.175 20 H -0.195 1.195 21 H -0.194 1.194 22 C 0.025 3.975 23 H 0.188 0.812 24 O -0.328 6.328 25 C 0.362 3.638 26 F -0.160 7.160 27 F -0.161 7.161 28 F -0.172 7.172 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.110 0.890 32 H 0.253 0.747 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 2.261 -5.362 -17.693 18.625 hybrid contribution -0.017 0.326 0.544 0.635 sum 2.244 -5.036 -17.149 18.013 Atomic orbital electron populations 1.22027 0.92577 1.03537 1.02839 1.21577 0.96778 0.97695 0.83469 0.89882 1.45931 1.68717 1.14734 1.08636 1.21041 0.76032 0.86914 0.84750 1.90676 1.50203 1.18259 1.85176 1.20285 1.03171 0.97887 0.89695 1.19559 0.93594 1.04254 1.01336 1.20730 0.96836 0.96615 0.97045 1.20715 0.98217 1.06045 1.01065 1.20961 0.94012 0.99646 0.99207 1.21416 0.97418 1.00038 1.02219 1.17740 0.92550 0.89535 0.90880 1.19613 1.01253 1.33928 0.96068 0.90794 1.26695 1.03676 0.93574 0.94143 1.69872 1.36777 1.38020 1.01232 0.85375 0.76737 0.79682 0.78690 1.17522 1.19509 1.19446 1.23354 0.83763 1.03267 0.87137 0.81174 1.86710 1.74335 1.31348 1.40455 1.21886 0.94624 0.73569 0.73682 1.93182 1.88456 1.77300 1.57048 1.93210 1.91028 1.86235 1.45597 1.93190 1.92678 1.35586 1.95778 0.90568 0.94320 0.88956 0.74681 0.87185 0.88105 0.86795 0.86895 0.87844 0.88098 0.90541 0.74694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.36 71.98 0.67 -2.50 16 2 C 0.11 2.30 2.20 44.99 0.10 2.40 16 3 H 0.08 2.10 6.98 -2.38 -0.02 2.09 16 4 N -0.72 -17.75 4.01 -442.52 -1.77 -19.52 16 5 C 0.52 18.91 7.41 87.66 0.65 19.56 16 6 O -0.57 -26.08 15.70 -3.04 -0.05 -26.13 16 7 C -0.07 -2.62 5.18 29.10 0.15 -2.47 16 8 C -0.19 -8.84 4.43 -19.41 -0.09 -8.92 16 9 C -0.09 -4.25 9.66 22.22 0.21 -4.04 16 10 C -0.24 -11.09 10.05 22.46 0.23 -10.86 16 11 C -0.12 -5.96 10.02 22.22 0.22 -5.74 16 12 C -0.19 -10.61 8.68 22.73 0.20 -10.42 16 13 C 0.10 5.17 5.57 -21.29 -0.12 5.05 16 14 C -0.48 -25.35 8.14 23.46 0.19 -25.16 16 15 H 0.07 3.75 6.68 -2.91 -0.02 3.73 16 16 C 0.03 1.65 5.26 85.26 0.45 2.09 16 17 N -0.83 -44.03 10.75 21.83 0.23 -43.79 16 18 Si 0.97 38.36 29.57 68.60 2.03 40.39 16 19 H -0.25 -9.21 7.11 99.48 0.71 -8.51 16 20 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 21 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 22 C 0.09 1.23 2.70 30.60 0.08 1.32 16 23 H 0.17 1.58 8.14 -2.39 -0.02 1.57 16 24 O -0.52 -6.56 12.31 -148.98 -1.83 -8.39 16 25 C 0.42 7.47 2.85 71.98 0.21 7.67 16 26 F -0.18 -3.48 15.35 44.97 0.69 -2.79 16 27 F -0.18 -3.31 17.16 44.97 0.77 -2.54 16 28 F -0.19 -4.12 16.31 44.97 0.73 -3.39 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 30 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.53 7.49 -2.39 -0.02 1.51 16 32 H 0.42 7.46 7.74 -92.71 -0.72 6.74 16 33 H 0.11 3.27 8.05 -2.39 -0.02 3.25 16 34 H 0.10 3.65 7.09 -2.39 -0.02 3.64 16 35 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 36 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 37 H 0.10 4.59 8.06 -2.91 -0.02 4.57 16 38 H 0.10 5.87 6.10 -2.91 -0.02 5.85 16 39 H 0.28 13.74 8.30 -92.70 -0.77 12.97 16 40 H 0.40 3.05 8.88 -74.06 -0.66 2.39 16 Total: -1.00 -70.35 349.87 3.70 -66.65 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: -0.26 Total: 31.53 kcal Atomic # 6 Polarization: -35.16 SS G_CDS: 3.16 Total: -32.01 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: -1.54 Total: -63.32 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -1.88 Total: -34.52 kcal Atomic # 9 Polarization: -10.92 SS G_CDS: 2.20 Total: -8.72 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Total: -70.35 3.70 -66.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819566155.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.281 kcal (2) G-P(sol) polarization free energy of solvation -70.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds