Wall clock time and date at job start Tue Mar 31 2020 17:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47102 * 2 1 4 4 N 1.46505 * 109.46998 * 120.00451 * 2 1 3 5 5 C 1.34783 * 119.99568 * 274.99955 * 4 2 1 6 6 O 1.21281 * 120.00235 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99576 * 180.02562 * 5 4 2 8 8 C 1.50703 * 109.46455 * 180.02562 * 7 5 4 9 9 C 1.37635 * 120.12455 * 264.99421 * 8 7 5 10 10 C 1.38610 * 120.24785 * 179.97438 * 9 8 7 11 11 C 1.38656 * 120.50063 * 0.02562 * 10 9 8 12 12 C 1.37595 * 120.24836 * 0.02562 * 11 10 9 13 13 C 1.40697 * 120.12865 * 84.73127 * 8 7 5 14 14 C 1.41395 * 120.24095 * 359.97438 * 13 8 7 15 15 H 1.07997 * 120.00636 * 333.90084 * 14 13 8 16 16 C 1.39952 * 119.99595 * 153.90222 * 14 13 8 17 17 N 1.30820 * 119.99863 * 343.71777 * 16 14 13 18 18 Si 1.86801 * 120.00088 * 163.72136 * 16 14 13 19 19 H 1.48500 * 109.47206 * 59.99637 * 18 16 14 20 20 H 1.48502 * 109.47141 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46895 * 299.99951 * 18 16 14 22 22 C 1.52998 * 109.47287 * 240.00017 * 2 1 3 23 23 H 1.09004 * 109.47015 * 65.00130 * 22 2 1 24 24 O 1.42896 * 109.47287 * 305.00116 * 22 2 1 25 25 C 1.53004 * 109.47169 * 185.00065 * 22 2 1 26 26 F 1.39895 * 109.47161 * 60.00188 * 25 22 2 27 27 F 1.39900 * 109.46897 * 180.02562 * 25 22 2 28 28 F 1.39900 * 109.46834 * 299.99857 * 25 22 2 29 29 H 1.08995 * 109.47356 * 299.99579 * 1 2 3 30 30 H 1.08998 * 109.46725 * 59.99982 * 1 2 3 31 31 H 1.09002 * 109.46864 * 179.97438 * 1 2 3 32 32 H 0.96996 * 120.00321 * 95.00266 * 4 2 1 33 33 H 1.09003 * 109.46811 * 299.99579 * 7 5 4 34 34 H 1.08995 * 109.47075 * 59.99756 * 7 5 4 35 35 H 1.07997 * 119.87842 * 0.02562 * 9 8 7 36 36 H 1.07999 * 119.75332 * 179.97438 * 10 9 8 37 37 H 1.08006 * 119.87738 * 180.02562 * 11 10 9 38 38 H 1.08005 * 120.13035 * 179.97438 * 12 11 10 39 39 H 0.97005 * 120.00058 * 179.97438 * 17 16 14 40 40 H 0.96696 * 114.00590 * 299.99808 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0184 2.3572 6 8 1.8590 1.1585 2.4116 7 6 2.6499 -0.7287 3.5875 8 6 2.6998 0.2395 4.7413 9 6 3.8719 0.8951 5.0427 10 6 3.9205 1.7865 6.1030 11 6 2.7921 2.0280 6.8717 12 6 1.6099 1.3831 6.5892 13 6 1.5471 0.4809 5.5110 14 6 0.3359 -0.1823 5.2069 15 1 0.1457 -0.5249 4.2005 16 6 -0.6166 -0.3947 6.2100 17 7 -0.2781 -0.2792 7.4684 18 14 -2.3712 -0.8432 5.7522 19 1 -2.3726 -2.1126 4.9815 20 1 -3.1770 -1.0139 6.9879 21 1 -2.9587 0.2398 4.9232 22 6 2.0401 -0.7212 -1.2492 23 1 1.7517 -0.1582 -2.1370 24 8 1.4703 -2.0303 -1.3095 25 6 3.5649 -0.8310 -1.1879 26 9 3.9350 -1.5536 -0.0486 27 9 4.0313 -1.4900 -2.3305 28 9 4.1227 0.4506 -1.1290 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6318 1.1526 33 1 1.9776 -1.5510 3.8325 34 1 3.6491 -1.1205 3.3979 35 1 4.7567 0.7149 4.4504 36 1 4.8445 2.2962 6.3327 37 1 2.8413 2.7250 7.6953 38 1 0.7322 1.5724 7.1895 39 1 -0.9383 -0.4260 8.1637 40 1 1.6858 -2.5885 -0.5499 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819566156.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:00 Heat of formation + Delta-G solvation = -222.954677 kcal Electronic energy + Delta-G solvation = -29498.976161 eV Core-core repulsion = 24863.327853 eV Total energy + Delta-G solvation = -4635.648309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.38626 -47.91149 -47.84540 -39.79597 -38.23163 -37.18120 -34.55350 -33.61491 -32.00419 -30.83336 -29.43925 -28.95350 -26.76283 -25.02349 -24.07437 -22.05840 -20.92360 -20.52964 -19.57069 -18.91547 -18.79076 -18.53131 -17.31325 -17.02006 -16.52960 -15.44698 -15.34820 -14.93870 -14.69134 -14.65788 -14.54427 -14.29084 -14.24267 -14.06605 -13.99509 -13.92532 -13.59539 -13.49567 -13.14811 -12.68443 -12.54738 -12.33540 -12.08666 -11.70103 -11.55870 -11.46594 -11.16197 -11.02335 -10.97932 -10.76318 -10.67222 -10.40633 -9.47963 -9.38212 -9.25255 -9.15142 -8.95173 -7.30267 -7.28691 -6.72994 -4.34044 2.33172 2.78220 2.93166 3.05714 3.08316 3.19979 3.23847 3.28246 3.32843 3.57446 3.60697 3.93079 4.00548 4.33640 4.66756 4.73210 5.07435 5.15067 5.43187 5.63173 5.78530 5.86688 6.01368 6.12639 6.21745 6.29996 6.42024 6.52357 6.53504 6.75745 6.80455 7.08938 7.30593 7.43304 7.62691 7.73921 7.94115 8.07214 8.14265 8.32196 8.64917 8.75475 8.92038 9.02373 10.21113 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.013975 B = 0.004118 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.099239 B = 6797.246202 C = 8214.655407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.109 3.891 3 H 0.108 0.892 4 N -0.748 5.748 5 C 0.521 3.479 6 O -0.513 6.513 7 C -0.070 4.070 8 C -0.182 4.182 9 C -0.081 4.081 10 C -0.239 4.239 11 C -0.107 4.107 12 C -0.159 4.159 13 C 0.130 3.870 14 C -0.457 4.457 15 H 0.073 0.927 16 C 0.077 3.923 17 N -0.795 5.795 18 Si 0.903 3.097 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.265 1.265 22 C 0.067 3.933 23 H 0.152 0.848 24 O -0.524 6.524 25 C 0.421 3.579 26 F -0.177 7.177 27 F -0.179 7.179 28 F -0.175 7.175 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.394 0.606 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.280 0.720 40 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.552 -4.647 -15.313 16.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.004 3.996 3 H 0.126 0.874 4 N -0.407 5.407 5 C 0.309 3.691 6 O -0.386 6.386 7 C -0.109 4.109 8 C -0.184 4.184 9 C -0.099 4.099 10 C -0.258 4.258 11 C -0.125 4.125 12 C -0.178 4.178 13 C 0.127 3.873 14 C -0.487 4.487 15 H 0.091 0.909 16 C -0.140 4.140 17 N -0.421 5.421 18 Si 0.728 3.272 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.189 1.189 22 C 0.005 3.995 23 H 0.170 0.830 24 O -0.330 6.330 25 C 0.366 3.634 26 F -0.158 7.158 27 F -0.161 7.161 28 F -0.156 7.156 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.230 0.770 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.135 0.865 39 H 0.091 0.909 40 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.040 -3.588 -15.560 16.098 hybrid contribution -0.123 -0.852 0.350 0.929 sum 1.918 -4.440 -15.210 15.960 Atomic orbital electron populations 1.22050 0.92831 1.03202 1.03272 1.21545 0.96613 0.98452 0.83024 0.87416 1.46417 1.70454 1.14025 1.09798 1.21279 0.76452 0.87664 0.83685 1.90690 1.47606 1.16101 1.84184 1.20261 1.01005 0.98920 0.90738 1.19039 0.94227 1.04317 1.00853 1.20304 0.95896 0.96935 0.96764 1.20305 0.97651 1.06409 1.01473 1.20681 0.94139 0.99392 0.98326 1.21295 0.96958 0.98598 1.00993 1.17322 0.91018 0.88958 0.89964 1.19420 1.00112 1.33176 0.95954 0.90863 1.25872 1.00434 0.93250 0.94457 1.69810 1.35620 1.36244 1.00388 0.86458 0.82054 0.79835 0.78892 1.19111 1.20359 1.18916 1.23647 0.84922 0.87704 1.03233 0.83029 1.86714 1.74076 1.23068 1.49151 1.21619 0.93747 0.74273 0.73766 1.93133 1.93147 1.78265 1.51298 1.93210 1.90713 1.81321 1.50830 1.93224 1.87494 1.38880 1.96028 0.90600 0.91649 0.91492 0.76977 0.88480 0.90507 0.89788 0.89687 0.89600 0.86536 0.90915 0.76559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.29 37.16 0.35 -1.40 16 2 C 0.11 1.23 2.30 -67.93 -0.16 1.08 16 3 H 0.11 1.40 7.38 -51.93 -0.38 1.02 16 4 N -0.75 -9.70 3.79 -53.80 -0.20 -9.90 16 5 C 0.52 9.53 7.40 -10.98 -0.08 9.45 16 6 O -0.51 -11.62 15.70 5.56 0.09 -11.53 16 7 C -0.07 -1.32 5.18 -29.03 -0.15 -1.47 16 8 C -0.18 -4.33 4.43 -103.91 -0.46 -4.79 16 9 C -0.08 -1.86 9.66 -39.66 -0.38 -2.24 16 10 C -0.24 -5.57 10.05 -39.29 -0.39 -5.97 16 11 C -0.11 -2.61 10.02 -39.66 -0.40 -3.00 16 12 C -0.16 -4.23 8.69 -38.88 -0.34 -4.57 16 13 C 0.13 3.42 5.56 -106.83 -0.59 2.83 16 14 C -0.46 -11.76 8.14 -37.74 -0.31 -12.07 16 15 H 0.07 1.81 6.67 -52.49 -0.35 1.46 16 16 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16 17 N -0.80 -20.31 10.96 55.55 0.61 -19.71 16 18 Si 0.90 18.54 29.59 -169.99 -5.03 13.51 16 19 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 20 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 21 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16 22 C 0.07 0.57 2.95 -26.73 -0.08 0.49 16 23 H 0.15 0.98 8.14 -51.93 -0.42 0.55 16 24 O -0.52 -4.23 12.40 -35.23 -0.44 -4.66 16 25 C 0.42 4.24 2.83 37.16 0.11 4.35 16 26 F -0.18 -1.87 14.03 2.25 0.03 -1.84 16 27 F -0.18 -1.87 17.26 2.25 0.04 -1.83 16 28 F -0.17 -2.06 16.89 2.25 0.04 -2.02 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.70 7.56 -51.93 -0.39 0.31 16 32 H 0.39 3.98 5.87 -40.82 -0.24 3.74 16 33 H 0.10 1.80 7.08 -51.93 -0.37 1.43 16 34 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 35 H 0.08 1.72 8.06 -52.49 -0.42 1.29 16 36 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 38 H 0.12 3.18 6.21 -52.48 -0.33 2.86 16 39 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 40 H 0.38 2.23 7.45 45.56 0.34 2.57 16 LS Contribution 346.75 15.07 5.23 5.23 Total: -1.00 -31.11 346.75 -6.43 -37.54 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -3.81 Total: 10.72 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -2.98 Total: -15.51 kcal Atomic # 7 Polarization: -30.01 SS G_CDS: 0.40 Total: -29.61 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.35 Total: -16.19 kcal Atomic # 9 Polarization: -5.81 SS G_CDS: 0.11 Total: -5.70 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.11 -6.43 -37.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819566156.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.410 kcal (2) G-P(sol) polarization free energy of solvation -31.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds