Wall clock time and date at job start Tue Mar 31 2020 17:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47102 * 2 1 4 4 N 1.46505 * 109.46998 * 120.00451 * 2 1 3 5 5 C 1.34783 * 119.99568 * 274.99955 * 4 2 1 6 6 O 1.21281 * 120.00235 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99576 * 180.02562 * 5 4 2 8 8 C 1.50703 * 109.46455 * 180.02562 * 7 5 4 9 9 C 1.37635 * 120.12455 * 264.99421 * 8 7 5 10 10 C 1.38610 * 120.24785 * 179.97438 * 9 8 7 11 11 C 1.38656 * 120.50063 * 0.02562 * 10 9 8 12 12 C 1.37595 * 120.24836 * 0.02562 * 11 10 9 13 13 C 1.40697 * 120.12865 * 84.73127 * 8 7 5 14 14 C 1.41395 * 120.24095 * 359.97438 * 13 8 7 15 15 H 1.07997 * 120.00636 * 333.90084 * 14 13 8 16 16 C 1.39952 * 119.99595 * 153.90222 * 14 13 8 17 17 N 1.30820 * 119.99863 * 343.71777 * 16 14 13 18 18 Si 1.86801 * 120.00088 * 163.72136 * 16 14 13 19 19 H 1.48500 * 109.47206 * 59.99637 * 18 16 14 20 20 H 1.48502 * 109.47141 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46895 * 299.99951 * 18 16 14 22 22 C 1.52998 * 109.47287 * 240.00017 * 2 1 3 23 23 H 1.09004 * 109.47015 * 65.00130 * 22 2 1 24 24 O 1.42896 * 109.47287 * 305.00116 * 22 2 1 25 25 C 1.53004 * 109.47169 * 185.00065 * 22 2 1 26 26 F 1.39895 * 109.47161 * 60.00188 * 25 22 2 27 27 F 1.39900 * 109.46897 * 180.02562 * 25 22 2 28 28 F 1.39900 * 109.46834 * 299.99857 * 25 22 2 29 29 H 1.08995 * 109.47356 * 299.99579 * 1 2 3 30 30 H 1.08998 * 109.46725 * 59.99982 * 1 2 3 31 31 H 1.09002 * 109.46864 * 179.97438 * 1 2 3 32 32 H 0.96996 * 120.00321 * 95.00266 * 4 2 1 33 33 H 1.09003 * 109.46811 * 299.99579 * 7 5 4 34 34 H 1.08995 * 109.47075 * 59.99756 * 7 5 4 35 35 H 1.07997 * 119.87842 * 0.02562 * 9 8 7 36 36 H 1.07999 * 119.75332 * 179.97438 * 10 9 8 37 37 H 1.08006 * 119.87738 * 180.02562 * 11 10 9 38 38 H 1.08005 * 120.13035 * 179.97438 * 12 11 10 39 39 H 0.97005 * 120.00058 * 179.97438 * 17 16 14 40 40 H 0.96696 * 114.00590 * 299.99808 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0184 2.3572 6 8 1.8590 1.1585 2.4116 7 6 2.6499 -0.7287 3.5875 8 6 2.6998 0.2395 4.7413 9 6 3.8719 0.8951 5.0427 10 6 3.9205 1.7865 6.1030 11 6 2.7921 2.0280 6.8717 12 6 1.6099 1.3831 6.5892 13 6 1.5471 0.4809 5.5110 14 6 0.3359 -0.1823 5.2069 15 1 0.1457 -0.5249 4.2005 16 6 -0.6166 -0.3947 6.2100 17 7 -0.2781 -0.2792 7.4684 18 14 -2.3712 -0.8432 5.7522 19 1 -2.3726 -2.1126 4.9815 20 1 -3.1770 -1.0139 6.9879 21 1 -2.9587 0.2398 4.9232 22 6 2.0401 -0.7212 -1.2492 23 1 1.7517 -0.1582 -2.1370 24 8 1.4703 -2.0303 -1.3095 25 6 3.5649 -0.8310 -1.1879 26 9 3.9350 -1.5536 -0.0486 27 9 4.0313 -1.4900 -2.3305 28 9 4.1227 0.4506 -1.1290 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6318 1.1526 33 1 1.9776 -1.5510 3.8325 34 1 3.6491 -1.1205 3.3979 35 1 4.7567 0.7149 4.4504 36 1 4.8445 2.2962 6.3327 37 1 2.8413 2.7250 7.6953 38 1 0.7322 1.5724 7.1895 39 1 -0.9383 -0.4260 8.1637 40 1 1.6858 -2.5885 -0.5499 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819566156.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:59 Heat of formation + Delta-G solvation = -243.212190 kcal Electronic energy + Delta-G solvation = -29499.854593 eV Core-core repulsion = 24863.327853 eV Total energy + Delta-G solvation = -4636.526740 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.20841 -48.74127 -48.67617 -41.06221 -39.52061 -38.65401 -35.62623 -35.47956 -33.58249 -32.05867 -31.31116 -29.79006 -28.41462 -26.85683 -24.95670 -23.16871 -22.79624 -21.80937 -21.14367 -19.73360 -19.64679 -19.35462 -19.05273 -18.27930 -17.67778 -17.22661 -16.34253 -16.26927 -16.17604 -15.67933 -15.52567 -15.48146 -15.17520 -15.08531 -15.06902 -14.88312 -14.84051 -14.79987 -14.43835 -14.34846 -13.80126 -13.54472 -13.35812 -13.22084 -12.91647 -12.85170 -12.74397 -12.65907 -12.46970 -12.25293 -12.11026 -11.54870 -11.31523 -11.20169 -11.01026 -10.77540 -10.15163 -9.21626 -9.15445 -8.57617 -6.27514 1.00852 1.14275 1.37395 1.47413 1.55529 1.55766 1.82030 2.11835 2.21059 2.57036 2.70214 2.80216 2.80923 3.26674 3.53479 3.76208 4.00699 4.12681 4.18027 4.30716 4.41290 4.47989 4.62219 4.71054 4.74320 4.81668 4.94602 5.07866 5.21272 5.28274 5.37932 5.44475 5.56167 5.78716 6.04971 6.17610 6.19807 6.22637 6.43206 6.54587 6.75403 7.00847 7.12877 7.39874 8.38662 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.013975 B = 0.004118 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.099239 B = 6797.246202 C = 8214.655407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.108 3.892 3 H 0.091 0.909 4 N -0.728 5.728 5 C 0.525 3.475 6 O -0.564 6.564 7 C -0.070 4.070 8 C -0.188 4.188 9 C -0.092 4.092 10 C -0.244 4.244 11 C -0.118 4.118 12 C -0.194 4.194 13 C 0.098 3.902 14 C -0.480 4.480 15 H 0.074 0.926 16 C 0.036 3.964 17 N -0.827 5.827 18 Si 0.971 3.029 19 H -0.251 1.251 20 H -0.270 1.270 21 H -0.270 1.270 22 C 0.086 3.914 23 H 0.180 0.820 24 O -0.524 6.524 25 C 0.418 3.582 26 F -0.181 7.181 27 F -0.179 7.179 28 F -0.186 7.186 29 H 0.037 0.963 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.411 0.589 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.285 0.715 40 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.655 -6.051 -17.446 18.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.002 3.998 3 H 0.109 0.891 4 N -0.386 5.386 5 C 0.313 3.687 6 O -0.441 6.441 7 C -0.110 4.110 8 C -0.190 4.190 9 C -0.110 4.110 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.213 4.213 13 C 0.096 3.904 14 C -0.510 4.510 15 H 0.093 0.907 16 C -0.178 4.178 17 N -0.453 5.453 18 Si 0.792 3.208 19 H -0.175 1.175 20 H -0.194 1.194 21 H -0.195 1.195 22 C 0.024 3.976 23 H 0.197 0.803 24 O -0.331 6.331 25 C 0.364 3.636 26 F -0.163 7.163 27 F -0.161 7.161 28 F -0.168 7.168 29 H 0.057 0.943 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.249 0.751 33 H 0.118 0.882 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 2.165 -5.051 -17.718 18.551 hybrid contribution -0.035 -0.419 0.983 1.069 sum 2.130 -5.470 -16.735 17.735 Atomic orbital electron populations 1.21992 0.92469 1.03715 1.02677 1.21650 0.96845 0.98000 0.83260 0.89071 1.46134 1.68813 1.14647 1.09026 1.21027 0.76016 0.86931 0.84730 1.90676 1.50112 1.18214 1.85136 1.20280 1.03046 0.97882 0.89777 1.19532 0.93592 1.04405 1.01444 1.20725 0.96816 0.96552 0.96951 1.20694 0.98239 1.06274 1.01068 1.20942 0.93973 0.99535 0.99150 1.21310 0.97314 1.00502 1.02200 1.17718 0.92473 0.89523 0.90733 1.19597 1.00950 1.34167 0.96286 0.90745 1.26673 1.04152 0.92861 0.94121 1.69881 1.37046 1.37036 1.01363 0.85424 0.76818 0.79749 0.78805 1.17519 1.19431 1.19524 1.23563 0.83570 0.87968 1.02473 0.80300 1.86725 1.73775 1.22733 1.49835 1.21881 0.94457 0.73716 0.73569 1.93119 1.93290 1.78313 1.51578 1.93211 1.90797 1.81255 1.50809 1.93206 1.87797 1.39735 1.96069 0.94343 0.89127 0.90358 0.75059 0.88198 0.87347 0.86854 0.86907 0.87816 0.88538 0.90419 0.75354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.29 71.98 0.67 -2.45 16 2 C 0.11 2.23 2.30 44.99 0.10 2.34 16 3 H 0.09 2.29 7.38 -2.39 -0.02 2.27 16 4 N -0.73 -17.68 3.79 -442.51 -1.68 -19.35 16 5 C 0.52 18.86 7.40 87.66 0.65 19.51 16 6 O -0.56 -25.93 15.70 -3.03 -0.05 -25.98 16 7 C -0.07 -2.60 5.18 29.10 0.15 -2.45 16 8 C -0.19 -8.95 4.43 -19.40 -0.09 -9.03 16 9 C -0.09 -4.17 9.66 22.22 0.21 -3.96 16 10 C -0.24 -11.19 10.05 22.46 0.23 -10.97 16 11 C -0.12 -5.84 10.02 22.22 0.22 -5.61 16 12 C -0.19 -10.72 8.69 22.73 0.20 -10.52 16 13 C 0.10 5.31 5.56 -21.29 -0.12 5.19 16 14 C -0.48 -25.38 8.14 23.46 0.19 -25.19 16 15 H 0.07 3.77 6.67 -2.91 -0.02 3.75 16 16 C 0.04 1.83 5.16 85.26 0.44 2.27 16 17 N -0.83 -43.56 10.96 21.83 0.24 -43.32 16 18 Si 0.97 38.31 29.59 68.60 2.03 40.33 16 19 H -0.25 -9.23 7.11 99.48 0.71 -8.53 16 20 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 21 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 22 C 0.09 1.21 2.95 30.59 0.09 1.30 16 23 H 0.18 1.61 8.14 -2.38 -0.02 1.59 16 24 O -0.52 -6.57 12.40 -148.98 -1.85 -8.42 16 25 C 0.42 7.41 2.83 71.98 0.20 7.62 16 26 F -0.18 -3.39 14.03 44.97 0.63 -2.76 16 27 F -0.18 -3.27 17.26 44.97 0.78 -2.50 16 28 F -0.19 -4.08 16.89 44.97 0.76 -3.33 16 29 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.43 7.56 -2.39 -0.02 1.42 16 32 H 0.41 7.26 5.87 -92.71 -0.54 6.72 16 33 H 0.10 3.62 7.08 -2.39 -0.02 3.61 16 34 H 0.11 3.25 8.05 -2.39 -0.02 3.23 16 35 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 36 H 0.11 4.46 8.06 -2.91 -0.02 4.43 16 37 H 0.10 4.59 8.06 -2.91 -0.02 4.56 16 38 H 0.10 5.59 6.21 -2.91 -0.02 5.57 16 39 H 0.29 13.71 8.30 -92.70 -0.77 12.95 16 40 H 0.40 3.18 7.45 -74.06 -0.55 2.63 16 Total: -1.00 -69.86 346.75 4.03 -65.82 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: 0.02 Total: 31.44 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: 3.15 Total: -31.95 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: -1.44 Total: -62.67 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -1.90 Total: -34.39 kcal Atomic # 9 Polarization: -10.75 SS G_CDS: 2.17 Total: -8.58 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.33 kcal Total: -69.86 4.03 -65.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819566156.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.388 kcal (2) G-P(sol) polarization free energy of solvation -69.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds