Wall clock time and date at job start Tue Mar 31 2020 17:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47366 * 2 1 4 4 N 1.46495 * 109.47047 * 239.99320 * 2 1 3 5 5 C 1.34776 * 120.00037 * 85.00663 * 4 2 1 6 6 O 1.21274 * 119.99748 * 359.97438 * 5 4 2 7 7 C 1.50705 * 119.99929 * 179.97438 * 5 4 2 8 8 C 1.50700 * 109.46942 * 179.97438 * 7 5 4 9 9 C 1.37634 * 120.12443 * 264.99956 * 8 7 5 10 10 C 1.38616 * 120.24946 * 179.97438 * 9 8 7 11 11 C 1.38662 * 120.49675 * 0.02562 * 10 9 8 12 12 C 1.37596 * 120.24880 * 0.02562 * 11 10 9 13 13 C 1.40695 * 120.13028 * 84.72092 * 8 7 5 14 14 C 1.41402 * 120.24438 * 359.97438 * 13 8 7 15 15 H 1.08003 * 119.99609 * 332.04145 * 14 13 8 16 16 C 1.39946 * 120.00035 * 152.03871 * 14 13 8 17 17 N 1.30824 * 119.99812 * 349.00423 * 16 14 13 18 18 Si 1.86803 * 119.99847 * 169.00715 * 16 14 13 19 19 H 1.48502 * 109.47247 * 59.99958 * 18 16 14 20 20 H 1.48502 * 109.46955 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46799 * 299.99817 * 18 16 14 22 22 C 1.53007 * 109.46500 * 119.99471 * 2 1 3 23 23 H 1.08996 * 109.47120 * 64.30397 * 22 2 1 24 24 O 1.42894 * 109.47153 * 304.29983 * 22 2 1 25 25 C 1.53005 * 109.46726 * 184.29864 * 22 2 1 26 26 F 1.39895 * 109.47113 * 173.54655 * 25 22 2 27 27 F 1.39902 * 109.46824 * 293.54615 * 25 22 2 28 28 F 1.39903 * 109.47042 * 53.54549 * 25 22 2 29 29 H 1.09004 * 109.46725 * 65.37348 * 1 2 3 30 30 H 1.09000 * 109.47248 * 185.36824 * 1 2 3 31 31 H 1.08999 * 109.47268 * 305.37094 * 1 2 3 32 32 H 0.97010 * 120.00038 * 264.99938 * 4 2 1 33 33 H 1.08999 * 109.46931 * 299.99667 * 7 5 4 34 34 H 1.08999 * 109.47324 * 59.99605 * 7 5 4 35 35 H 1.08002 * 119.87882 * 359.97438 * 9 8 7 36 36 H 1.07993 * 119.75262 * 179.97438 * 10 9 8 37 37 H 1.08003 * 119.87354 * 179.97438 * 11 10 9 38 38 H 1.08003 * 120.12526 * 179.97438 * 12 11 10 39 39 H 0.97007 * 119.99318 * 180.02562 * 17 16 14 40 40 H 0.96709 * 113.99980 * 299.99899 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1472 -0.0185 -2.3571 6 8 1.8584 1.1581 -2.4117 7 6 2.6500 -0.7290 -3.5873 8 6 2.7002 0.2391 -4.7412 9 6 1.6450 0.3202 -5.6212 10 6 1.6881 1.2101 -6.6831 11 6 2.7923 2.0273 -6.8720 12 6 3.8590 1.9625 -6.0052 13 6 3.8232 1.0677 -4.9197 14 6 4.9104 0.9977 -4.0182 15 1 4.7451 0.6917 -2.9957 16 6 6.2004 1.3248 -4.4510 17 7 6.4412 1.4853 -5.7269 18 14 7.5784 1.5321 -3.2070 19 1 7.7626 0.2640 -2.4564 20 1 8.8374 1.8758 -3.9156 21 1 7.2306 2.6218 -2.2601 22 6 2.0399 -0.7212 1.2494 23 1 1.7408 -1.7687 1.2118 24 8 1.4828 -0.1083 2.4138 25 6 3.5661 -0.6283 1.3047 26 9 4.0219 -1.1571 2.5170 27 9 4.1162 -1.3544 0.2429 28 9 3.9556 0.7117 1.2046 29 1 -0.3633 0.4283 -0.9342 30 1 -0.3634 -1.0232 0.0961 31 1 -0.3634 0.5949 0.8380 32 1 2.2490 -1.6320 -1.1524 33 1 3.6493 -1.1208 -3.3976 34 1 1.9778 -1.5513 -3.8323 35 1 0.7801 -0.3119 -5.4839 36 1 0.8559 1.2668 -7.3690 37 1 2.8154 2.7168 -7.7030 38 1 4.7182 2.5996 -6.1544 39 1 7.3355 1.7117 -6.0268 40 1 1.7084 0.8270 2.5122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819566158.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:09 Heat of formation + Delta-G solvation = -227.827064 kcal Electronic energy + Delta-G solvation = -29596.499037 eV Core-core repulsion = 24960.639446 eV Total energy + Delta-G solvation = -4635.859591 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.25311 -47.76312 -47.73124 -39.69257 -38.20750 -37.22568 -34.82747 -33.57972 -31.93547 -30.58666 -29.40289 -28.99190 -26.73782 -24.99875 -24.02017 -22.05642 -20.89610 -20.59402 -19.45520 -18.84378 -18.68811 -18.45799 -17.24995 -16.97201 -16.50994 -15.55296 -15.38639 -14.78737 -14.71276 -14.57235 -14.44199 -14.30106 -14.12978 -13.87474 -13.87256 -13.76719 -13.60265 -13.47871 -13.12239 -12.76587 -12.54687 -12.37929 -12.14169 -11.70860 -11.53057 -11.46911 -11.13235 -11.00122 -10.96767 -10.75683 -10.65004 -10.36546 -9.48648 -9.36379 -9.23963 -9.16548 -8.94146 -7.29299 -7.24423 -6.66545 -4.33392 2.41512 2.78924 2.93954 3.08200 3.12654 3.18609 3.26039 3.29433 3.47546 3.50801 3.79753 3.97149 4.08253 4.37388 4.65486 4.70984 5.04409 5.16670 5.41784 5.60244 5.75762 5.81627 6.01896 6.07873 6.13099 6.29119 6.43678 6.52545 6.57181 6.77088 6.81330 7.12453 7.32486 7.45220 7.65166 7.77452 7.94360 8.10465 8.14993 8.34263 8.67713 8.76436 8.95124 9.03900 10.26180 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.012035 B = 0.004869 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.038634 B = 5749.112228 C = 7559.363747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.109 3.891 3 H 0.103 0.897 4 N -0.743 5.743 5 C 0.521 3.479 6 O -0.514 6.514 7 C -0.070 4.070 8 C -0.180 4.180 9 C -0.083 4.083 10 C -0.237 4.237 11 C -0.109 4.109 12 C -0.155 4.155 13 C 0.128 3.872 14 C -0.455 4.455 15 H 0.073 0.927 16 C 0.076 3.924 17 N -0.801 5.801 18 Si 0.902 3.098 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.265 1.265 22 C 0.068 3.932 23 H 0.144 0.856 24 O -0.523 6.523 25 C 0.418 3.582 26 F -0.180 7.180 27 F -0.171 7.171 28 F -0.178 7.178 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.399 0.601 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.121 0.879 39 H 0.279 0.721 40 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.430 -6.343 13.380 16.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.003 3.997 3 H 0.121 0.879 4 N -0.400 5.400 5 C 0.309 3.691 6 O -0.387 6.387 7 C -0.110 4.110 8 C -0.182 4.182 9 C -0.101 4.101 10 C -0.256 4.256 11 C -0.128 4.128 12 C -0.174 4.174 13 C 0.125 3.875 14 C -0.485 4.485 15 H 0.091 0.909 16 C -0.141 4.141 17 N -0.427 5.427 18 Si 0.727 3.273 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.189 1.189 22 C 0.006 3.994 23 H 0.162 0.838 24 O -0.328 6.328 25 C 0.363 3.637 26 F -0.161 7.161 27 F -0.152 7.152 28 F -0.159 7.159 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.233 0.767 33 H 0.116 0.884 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.139 0.861 39 H 0.090 0.910 40 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -6.637 -5.983 13.270 15.998 hybrid contribution 1.405 0.185 0.465 1.492 sum -5.231 -5.798 13.735 15.800 Atomic orbital electron populations 1.22043 0.93066 1.02537 1.03359 1.21512 0.96340 0.98545 0.83291 0.87935 1.46209 1.70361 1.14084 1.09363 1.21288 0.76277 0.87657 0.83902 1.90687 1.47677 1.15868 1.84487 1.20267 1.02191 0.97524 0.90975 1.19071 0.98446 1.02356 0.98334 1.20290 0.96082 0.98216 0.95523 1.20321 0.99316 1.04250 1.01749 1.20703 0.94680 0.98783 0.98603 1.21389 0.97935 1.00766 0.97359 1.17346 0.90615 0.88010 0.91483 1.19441 0.91244 1.40222 0.97585 0.90931 1.25850 1.00174 0.92600 0.95458 1.69788 1.22845 1.35276 1.14801 0.86454 0.79599 0.79962 0.81260 1.19038 1.20299 1.18932 1.23475 0.85224 1.02301 0.88388 0.83838 1.86694 1.74397 1.30202 1.41542 1.21599 0.93730 0.74362 0.74000 1.93202 1.91008 1.86369 1.45532 1.93221 1.87686 1.77579 1.56736 1.93222 1.92775 1.34185 1.95760 0.90974 0.92205 0.91154 0.76668 0.88384 0.90472 0.89784 0.89687 0.89588 0.86145 0.91004 0.76076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.20 37.16 0.34 -1.19 16 2 C 0.11 1.24 2.21 -67.93 -0.15 1.09 16 3 H 0.10 1.40 6.95 -51.93 -0.36 1.03 16 4 N -0.74 -9.78 4.02 -53.81 -0.22 -9.99 16 5 C 0.52 9.57 7.39 -10.98 -0.08 9.49 16 6 O -0.51 -11.68 15.70 5.56 0.09 -11.59 16 7 C -0.07 -1.33 5.18 -29.03 -0.15 -1.48 16 8 C -0.18 -4.28 4.43 -103.92 -0.46 -4.74 16 9 C -0.08 -1.89 9.66 -39.66 -0.38 -2.27 16 10 C -0.24 -5.49 10.05 -39.29 -0.39 -5.88 16 11 C -0.11 -2.66 10.02 -39.66 -0.40 -3.06 16 12 C -0.16 -4.15 8.67 -38.88 -0.34 -4.49 16 13 C 0.13 3.41 5.56 -106.83 -0.59 2.82 16 14 C -0.45 -12.03 8.11 -37.74 -0.31 -12.34 16 15 H 0.07 1.88 6.71 -52.48 -0.35 1.53 16 16 C 0.08 1.92 5.26 -17.34 -0.09 1.83 16 17 N -0.80 -20.86 10.78 55.55 0.60 -20.26 16 18 Si 0.90 19.34 29.57 -169.99 -5.03 14.31 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 22 C 0.07 0.61 2.70 -26.72 -0.07 0.54 16 23 H 0.14 0.99 8.14 -51.93 -0.42 0.57 16 24 O -0.52 -4.25 12.44 -35.23 -0.44 -4.68 16 25 C 0.42 4.82 2.86 37.16 0.11 4.93 16 26 F -0.18 -2.10 17.16 2.25 0.04 -2.06 16 27 F -0.17 -2.21 15.41 2.25 0.03 -2.18 16 28 F -0.18 -2.40 16.30 2.25 0.04 -2.37 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.61 7.76 -51.93 -0.40 0.21 16 32 H 0.40 4.14 7.80 -40.82 -0.32 3.82 16 33 H 0.10 1.87 7.11 -51.93 -0.37 1.50 16 34 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 35 H 0.08 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 38 H 0.12 3.33 6.14 -52.48 -0.32 3.01 16 39 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 40 H 0.39 2.16 8.88 45.56 0.40 2.57 16 LS Contribution 350.30 15.07 5.28 5.28 Total: -1.00 -31.87 350.30 -6.39 -38.25 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -3.81 Total: 10.06 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -2.97 Total: -14.77 kcal Atomic # 7 Polarization: -30.64 SS G_CDS: 0.38 Total: -30.26 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.35 Total: -16.28 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 0.11 Total: -6.61 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.87 -6.39 -38.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819566158.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.575 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds