Wall clock time and date at job start Tue Mar 31 2020 17:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47366 * 2 1 4 4 N 1.46495 * 109.47047 * 239.99320 * 2 1 3 5 5 C 1.34776 * 120.00037 * 85.00663 * 4 2 1 6 6 O 1.21274 * 119.99748 * 359.97438 * 5 4 2 7 7 C 1.50705 * 119.99929 * 179.97438 * 5 4 2 8 8 C 1.50700 * 109.46942 * 179.97438 * 7 5 4 9 9 C 1.37634 * 120.12443 * 264.99956 * 8 7 5 10 10 C 1.38616 * 120.24946 * 179.97438 * 9 8 7 11 11 C 1.38662 * 120.49675 * 0.02562 * 10 9 8 12 12 C 1.37596 * 120.24880 * 0.02562 * 11 10 9 13 13 C 1.40695 * 120.13028 * 84.72092 * 8 7 5 14 14 C 1.41402 * 120.24438 * 359.97438 * 13 8 7 15 15 H 1.08003 * 119.99609 * 332.04145 * 14 13 8 16 16 C 1.39946 * 120.00035 * 152.03871 * 14 13 8 17 17 N 1.30824 * 119.99812 * 349.00423 * 16 14 13 18 18 Si 1.86803 * 119.99847 * 169.00715 * 16 14 13 19 19 H 1.48502 * 109.47247 * 59.99958 * 18 16 14 20 20 H 1.48502 * 109.46955 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46799 * 299.99817 * 18 16 14 22 22 C 1.53007 * 109.46500 * 119.99471 * 2 1 3 23 23 H 1.08996 * 109.47120 * 64.30397 * 22 2 1 24 24 O 1.42894 * 109.47153 * 304.29983 * 22 2 1 25 25 C 1.53005 * 109.46726 * 184.29864 * 22 2 1 26 26 F 1.39895 * 109.47113 * 173.54655 * 25 22 2 27 27 F 1.39902 * 109.46824 * 293.54615 * 25 22 2 28 28 F 1.39903 * 109.47042 * 53.54549 * 25 22 2 29 29 H 1.09004 * 109.46725 * 65.37348 * 1 2 3 30 30 H 1.09000 * 109.47248 * 185.36824 * 1 2 3 31 31 H 1.08999 * 109.47268 * 305.37094 * 1 2 3 32 32 H 0.97010 * 120.00038 * 264.99938 * 4 2 1 33 33 H 1.08999 * 109.46931 * 299.99667 * 7 5 4 34 34 H 1.08999 * 109.47324 * 59.99605 * 7 5 4 35 35 H 1.08002 * 119.87882 * 359.97438 * 9 8 7 36 36 H 1.07993 * 119.75262 * 179.97438 * 10 9 8 37 37 H 1.08003 * 119.87354 * 179.97438 * 11 10 9 38 38 H 1.08003 * 120.12526 * 179.97438 * 12 11 10 39 39 H 0.97007 * 119.99318 * 180.02562 * 17 16 14 40 40 H 0.96709 * 113.99980 * 299.99899 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1472 -0.0185 -2.3571 6 8 1.8584 1.1581 -2.4117 7 6 2.6500 -0.7290 -3.5873 8 6 2.7002 0.2391 -4.7412 9 6 1.6450 0.3202 -5.6212 10 6 1.6881 1.2101 -6.6831 11 6 2.7923 2.0273 -6.8720 12 6 3.8590 1.9625 -6.0052 13 6 3.8232 1.0677 -4.9197 14 6 4.9104 0.9977 -4.0182 15 1 4.7451 0.6917 -2.9957 16 6 6.2004 1.3248 -4.4510 17 7 6.4412 1.4853 -5.7269 18 14 7.5784 1.5321 -3.2070 19 1 7.7626 0.2640 -2.4564 20 1 8.8374 1.8758 -3.9156 21 1 7.2306 2.6218 -2.2601 22 6 2.0399 -0.7212 1.2494 23 1 1.7408 -1.7687 1.2118 24 8 1.4828 -0.1083 2.4138 25 6 3.5661 -0.6283 1.3047 26 9 4.0219 -1.1571 2.5170 27 9 4.1162 -1.3544 0.2429 28 9 3.9556 0.7117 1.2046 29 1 -0.3633 0.4283 -0.9342 30 1 -0.3634 -1.0232 0.0961 31 1 -0.3634 0.5949 0.8380 32 1 2.2490 -1.6320 -1.1524 33 1 3.6493 -1.1208 -3.3976 34 1 1.9778 -1.5513 -3.8323 35 1 0.7801 -0.3119 -5.4839 36 1 0.8559 1.2668 -7.3690 37 1 2.8154 2.7168 -7.7030 38 1 4.7182 2.5996 -6.1544 39 1 7.3355 1.7117 -6.0268 40 1 1.7084 0.8270 2.5122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819566158.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:08 Heat of formation + Delta-G solvation = -249.341870 kcal Electronic energy + Delta-G solvation = -29597.431989 eV Core-core repulsion = 24960.639446 eV Total energy + Delta-G solvation = -4636.792543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.20394 -48.74093 -48.68149 -41.00116 -39.45936 -38.67573 -35.93060 -35.48065 -33.54949 -31.80189 -31.28369 -29.82555 -28.38610 -26.85133 -24.96718 -23.09838 -22.77667 -21.96938 -21.04573 -19.72941 -19.61995 -19.41136 -19.05757 -18.21316 -17.67750 -17.19415 -16.52857 -16.31843 -16.16300 -15.63956 -15.53759 -15.45129 -15.14752 -15.11412 -15.09369 -14.86718 -14.80401 -14.77748 -14.38087 -14.34259 -13.89312 -13.53365 -13.36068 -13.17922 -12.95645 -12.88063 -12.77698 -12.65171 -12.47901 -12.25059 -12.12224 -11.57425 -11.32649 -11.20089 -11.06387 -10.76934 -10.13394 -9.18418 -9.14250 -8.55539 -6.30669 0.99467 1.14760 1.32827 1.42420 1.51081 1.55798 1.81849 2.11108 2.18251 2.59508 2.64836 2.80139 2.87083 3.31177 3.50459 3.76667 3.85880 4.13562 4.18070 4.35513 4.43230 4.49527 4.63858 4.72858 4.77016 4.83012 4.94756 5.09427 5.21045 5.26589 5.39770 5.47039 5.56706 5.79269 6.04956 6.18528 6.21161 6.23050 6.43423 6.58903 6.76335 7.00645 7.12551 7.41386 8.39104 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.012035 B = 0.004869 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.038634 B = 5749.112228 C = 7559.363747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.107 3.893 3 H 0.076 0.924 4 N -0.723 5.723 5 C 0.524 3.476 6 O -0.566 6.566 7 C -0.071 4.071 8 C -0.184 4.184 9 C -0.092 4.092 10 C -0.238 4.238 11 C -0.120 4.120 12 C -0.190 4.190 13 C 0.094 3.906 14 C -0.480 4.480 15 H 0.068 0.932 16 C 0.036 3.964 17 N -0.831 5.831 18 Si 0.964 3.036 19 H -0.257 1.257 20 H -0.265 1.265 21 H -0.271 1.271 22 C 0.090 3.910 23 H 0.175 0.825 24 O -0.521 6.521 25 C 0.410 3.590 26 F -0.180 7.180 27 F -0.181 7.181 28 F -0.194 7.194 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.415 0.585 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.284 0.716 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.768 -8.217 14.928 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.002 3.998 3 H 0.094 0.906 4 N -0.380 5.380 5 C 0.313 3.687 6 O -0.443 6.443 7 C -0.111 4.111 8 C -0.186 4.186 9 C -0.110 4.110 10 C -0.257 4.257 11 C -0.139 4.139 12 C -0.209 4.209 13 C 0.092 3.908 14 C -0.510 4.510 15 H 0.086 0.914 16 C -0.178 4.178 17 N -0.458 5.458 18 Si 0.786 3.214 19 H -0.181 1.181 20 H -0.189 1.189 21 H -0.196 1.196 22 C 0.027 3.973 23 H 0.193 0.807 24 O -0.327 6.327 25 C 0.356 3.644 26 F -0.161 7.161 27 F -0.163 7.163 28 F -0.176 7.176 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.253 0.747 33 H 0.113 0.887 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -7.981 -7.900 14.847 18.615 hybrid contribution 1.710 0.751 -0.014 1.868 sum -6.271 -7.148 14.833 17.620 Atomic orbital electron populations 1.21973 0.91546 1.04098 1.02593 1.21620 0.97400 0.97431 0.83373 0.90563 1.45916 1.68754 1.14723 1.08585 1.21038 0.75815 0.86891 0.84998 1.90673 1.50316 1.17919 1.85429 1.20297 1.03175 0.97537 0.90074 1.19573 0.97469 1.01946 0.99565 1.20741 0.96877 0.98454 0.94926 1.20749 0.99469 1.03297 1.02174 1.20969 0.94602 0.99526 0.98769 1.21384 0.98498 1.01854 0.99195 1.17730 0.92125 0.89025 0.91941 1.19563 0.92147 1.41872 0.97437 0.91399 1.26577 1.02079 0.92035 0.97072 1.69859 1.23601 1.36098 1.16256 0.85519 0.77165 0.79828 0.78874 1.18065 1.18920 1.19643 1.23398 0.82977 1.03562 0.87334 0.80750 1.86695 1.73961 1.31323 1.40713 1.22117 0.95142 0.73498 0.73656 1.93200 1.91183 1.86266 1.45454 1.93196 1.88069 1.77726 1.57270 1.93194 1.93097 1.35471 1.95821 0.93684 0.89858 0.89558 0.74691 0.88720 0.86523 0.86277 0.86626 0.87782 0.88317 0.90527 0.74757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.20 71.98 0.66 -1.89 16 2 C 0.11 2.24 2.21 45.00 0.10 2.34 16 3 H 0.08 2.06 6.95 -2.39 -0.02 2.04 16 4 N -0.72 -17.72 4.02 -442.54 -1.78 -19.50 16 5 C 0.52 18.89 7.39 87.66 0.65 19.54 16 6 O -0.57 -26.06 15.70 -3.01 -0.05 -26.11 16 7 C -0.07 -2.63 5.18 29.10 0.15 -2.48 16 8 C -0.18 -8.70 4.43 -19.41 -0.09 -8.79 16 9 C -0.09 -4.05 9.66 22.22 0.21 -3.83 16 10 C -0.24 -10.70 10.05 22.46 0.23 -10.47 16 11 C -0.12 -5.93 10.02 22.22 0.22 -5.71 16 12 C -0.19 -10.57 8.67 22.73 0.20 -10.37 16 13 C 0.09 5.16 5.56 -21.29 -0.12 5.04 16 14 C -0.48 -26.25 8.11 23.46 0.19 -26.06 16 15 H 0.07 3.64 6.71 -2.91 -0.02 3.62 16 16 C 0.04 1.87 5.26 85.26 0.45 2.32 16 17 N -0.83 -44.86 10.78 21.83 0.24 -44.62 16 18 Si 0.96 40.44 29.57 68.60 2.03 42.47 16 19 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 20 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 22 C 0.09 1.35 2.70 30.60 0.08 1.44 16 23 H 0.18 1.61 8.14 -2.39 -0.02 1.59 16 24 O -0.52 -6.86 12.44 -148.98 -1.85 -8.71 16 25 C 0.41 8.78 2.86 71.98 0.21 8.98 16 26 F -0.18 -3.85 17.16 44.97 0.77 -3.08 16 27 F -0.18 -4.41 15.41 44.97 0.69 -3.71 16 28 F -0.19 -5.15 16.30 44.97 0.73 -4.42 16 29 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.27 7.76 -2.39 -0.02 1.25 16 32 H 0.42 7.44 7.80 -92.70 -0.72 6.72 16 33 H 0.09 3.56 7.11 -2.39 -0.02 3.54 16 34 H 0.12 3.29 8.05 -2.39 -0.02 3.27 16 35 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 36 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 37 H 0.10 4.57 8.06 -2.91 -0.02 4.55 16 38 H 0.10 5.79 6.14 -2.91 -0.02 5.77 16 39 H 0.28 14.03 8.30 -92.70 -0.77 13.26 16 40 H 0.40 3.53 8.88 -74.05 -0.66 2.87 16 Total: -1.00 -72.12 350.30 3.66 -68.46 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: -0.27 Total: 29.18 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 3.14 Total: -29.94 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: -1.54 Total: -64.13 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -1.90 Total: -34.82 kcal Atomic # 9 Polarization: -13.41 SS G_CDS: 2.20 Total: -11.22 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -72.12 3.66 -68.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819566158.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.880 kcal (2) G-P(sol) polarization free energy of solvation -72.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -253.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds